IslandPath Analysis: Vibrio parahaemolyticus RIMD 2210633 chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.42   STD DEV: 3.45
Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete sequence - 0..3288558
3080 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 47.82         371..805      	 -	144	28896775	-	VP0001	-	MioC protein	
2	 51.40 +1      910..2271     	 -	453	28896776	-	VP0002	-	thiophene and furan oxidation protein ThdF	
3	 47.63        2389..4011     	 -	540	28896777	-	VP0003	-	inner membrane protein, 60 kDa	
4	 44.26        4238..4594     	 -	118	28896778	-	VP0004	-	ribonuclease P protein component	
5	 48.89 +1     4608..4742     	 -	44	28896779	-	VP0005	-	ribosomal protein L34	
6	 48.24        4984..5721     	 -	245	28896780	-	VP0006	-	amino acid ABC transporter, ATP-binding protein	
7	 47.17        5718..6389     	 -	223	28896781	-	VP0007	-	amino acid ABC transproter, permease protein	
8	 46.99        6505..7251     	 -	248	28896782	-	VP0008	-	amino acid ABC transporter, periplasmic amino acid-binding portion	
9	 41.33 -1     7391..7540     	 +	49	28896783	-	VP0009	-	hypothetical protein	
10	 40.74 -1     7500..7634     	 +	44	28896784	-	VP0010	-	hypothetical protein	
11	 49.75 +1     7680..9086     	 +	468	28896785	-	VP0011	-	chromosomal DNA replication initiator DnaA	
12	 48.86        9150..10250    	 +	366	28896786	-	VP0012	-	DNA polymerase III, beta chain	
13	 45.37       10260..11339    	 +	359	28896787	-	VP0013	-	RecF protein	
14	 47.97       11353..13770    	 +	805	28896788	-	VP0014	-	DNA gyrase, subunit B	
15	 41.23 -1    13932..14045    	 +	37	28896789	-	VP0015	-	hypothetical protein	
16	 48.20       14119..14535    	 +	138	28896790	-	VP0016	-	hypothetical protein	
17	 41.03 -1    14551..14667    	 +	38	28896791	-	VP0017	-	hypothetical protein	
18	 44.06       15073..15510    	 +	145	28896792	-	VP0018	-	16 kDa heat shock protein A	
19	 48.09       15595..16848    	 -	417	28896793	-	VP0019	-	valine-pyruvate aminotransferase	
20	 49.30 +1    17066..19150    	 -	694	28896794	-	VP0020	-	alpha-amylase	
21	 48.14       19368..21434    	 -	688	28896795	-	VP0021	-	glycyl-tRNA synthetase, beta chain	
22	 47.49       21448..22365    	 -	305	28896796	-	VP0022	-	glycyl-tRNA synthetase, alpha chain	
23	 46.67       22847..23401    	 +	184	28896797	-	VP0023	-	conserved hypothetical protein	
24	 44.83       23608..23868    	 +	86	28896798	-	VP0024	-	NADH dehydrogenase subunit II-related protein	
25	 46.59       23913..24161    	 -	82	28896799	-	VP0025	-	conserved hypothetical protein	
26	 43.17       24294..24476    	 +	60	28896800	-	VP0026	-	hypothetical protein	
27	 49.55 +1    24591..25583    	 +	330	28896801	-	VP0027	-	putative transcriptional regulator, LysR family	
28	 50.76 +1    25673..26653    	 -	326	28896802	-	VP0028	-	zinc-binding alcohol dehydrogenase	
29	 51.28 +1    26892..28067    	 -	391	28896803	-	VP0029	-	fatty oxidation complex, beta subunit	
30	 48.39       28083..30254    	 -	723	28896804	-	VP0030	-	fatty oxidation complex, alpha subunit	
31	 47.76       30512..31135    	 +	207	28896805	-	VP0031	-	conserved hypothetical protein	
32	 47.74       31182..32639    	 +	485	28896806	-	VP0032	-	potassium uptake protein TrkH	
33	 40.53 -1    32649..33176    	 +	175	28896807	-	VP0033	-	protoporphyrinogen oxidase	
34	 42.99       39060..39950    	 -	296	28896808	-	VP0034	-	transcriptional activator IlvY	
35	 45.72       40094..41578    	 +	494	28896809	-	VP0035	-	ketol-acid reductoisomerase	
36	 38.89 -1    41762..42013    	 -	83	28896810	-	VP0036	-	conserved hypothetical protein	
37	 38.89 -1    42055..42162    	 +	35	28896811	-	VP0037	-	hypothetical protein	
38	 47.68       42145..45267    	 -	1040	28896812	-	VP0038	-	putative multidrug resistance protein	
39	 44.72       45279..46385    	 -	368	28896813	-	VP0039	-	conserved hypothetical protein	
40	 47.08       46404..46985    	 -	193	28896814	-	VP0040	-	transcriptional regulator, TetR family	
41	 47.32       47155..49170    	 +	671	28896815	-	VP0041	-	ATP-dependent DNA helicase Rep	
42	 48.31       49263..49676    	 -	137	28896816	-	VP0042	-	cytochrome c5	
43	 45.58       50640..50786    	 -	48	28896817	-	VP0043	-	hypothetical protein	
44	 45.87       50821..51546    	 -	241	28896818	-	VP0044	-	hypothetical protein	
45	 42.59       51603..51710    	 -	35	28896819	-	VP0045	-	hypothetical protein	
46	 37.99 -2    51950..52228    	 +	92	28896820	-	VP0046	-	hypothetical protein	
47	 48.60       52216..53931    	 +	571	28896821	-	VP0047	-	peptide ABC transporter, ATP-binding protein	
48	 47.81       54024..55577    	 +	517	28896822	-	VP0048	-	peptide ABC transporter, periplasmic peptide-binding protein	
49	 48.10       55702..56730    	 +	342	28896823	-	VP0049	-	peptide ABC transporter, permease protein	
50	 49.74 +1    56733..57689    	 +	318	28896824	-	VP0050	-	peptide ABC transporter, permease protein	
51	 40.86 -1    57774..57866    	 -	30	28896825	-	VP0052	-	hypothetical protein	
52	 49.55 +1    57846..58850    	 +	334	28896826	-	VP0051	-	hypothetical protein	
53	 46.21       59090..61411    	 -	773	28896827	-	VP0053	-	hypothetical protein	
54	 46.29       61675..63249    	 -	524	28896828	-	VP0054	-	hypothetical protein	
55	 47.64       63253..63825    	 -	190	28896829	-	VP0055	-	putative RNA polymerase ECF-type sigma factor	
56	 48.40       63828..65300    	 -	490	28896830	-	VP0056	-	hypothetical protein	
57	 47.82       65314..66666    	 -	450	28896831	-	VP0057	-	hypothetical protein	
58	 48.20       66784..67893    	 +	369	28896832	-	VP0058	-	gluconate utilization system Gnt-I transcriptional repressor	
59	 49.89 +1    67949..68884    	 +	311	28896833	-	VP0059	-	putative transcriptional regulator, LysR family	
60	 47.16       69154..69558    	 +	134	28896834	-	VP0060	-	putative multidrug transmembrane resistance signal peptide protein	
61	 48.48       69555..69884    	 +	109	28896835	-	VP0061	-	putative multidrug transmembrane resistance signal peptide protein	
62	 53.20 +2    69959..71755    	 -	598	28896836	-	VP0062	-	phosphogluconate dehydratase	
63	 48.95 +1    71755..72279    	 -	174	28896837	-	VP0063	-	thermoresistant gluconokinase	
64	 49.31 +1    72433..73809    	 +	458	28896838	-	VP0064	-	putative gluconate permease	
65	 50.82 +1    73819..74430    	 +	203	28896839	-	VP0065	-	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase	
66	 50.47 +1    74536..75393    	 -	285	28896840	-	VP0066	-	xanthosine phosphorylase	
67	 46.84       75455..76387    	 +	310	28896841	-	VP0067	-	putative LysR-family regulatory protein	
68	 48.90 +1    76469..77836    	 -	455	28896842	-	VP0068	-	glutathione reductase	
69	 51.67 +1    78084..78923    	 -	279	28896843	-	VP0069	-	conserved hypothetical protein	
70	 50.95 +1    79323..81365    	 +	680	28896844	-	VP0070	-	oligopeptidase A	
71	 46.70       81432..82052    	 -	206	28896845	-	VP0072	-	transcriptional regulator AsnC	
72	 49.03 +1    82010..85150    	 +	1046	28896846	-	VP0071	-	sensory box/GGDEF family protein	
73	 54.23 +2    85240..86019    	 +	259	28896847	-	VP0073	-	conserved hypothetical protein	
74	 48.69       86206..86778    	 +	190	28896848	-	VP0074	-	hypothetical protein	
75	 49.03 +1    86850..87728    	 -	292	28896849	-	VP0075	-	MadN protein	
76	 44.60       87793..88218    	 -	141	28896850	-	VP0076	-	universal stress protein A	
77	 42.23       88446..88973    	 +	175	28896851	-	VP0077	-	ferritin	
78	 45.37       89064..89387    	 +	107	28896852	-	VP0078	-	conserved hypothetical protein	
79	 50.17 +1    89545..90738    	 +	397	28896853	-	VP0079	-	conserved hypothetical protein	
80	 49.26 +1    90824..92167    	 -	447	28896854	-	VP0080	-	putative sigma-54 interacting response regulator transcription regulator protein	
81	 39.13 -1    92601..93152    	 +	183	28896855	-	VP0081	-	putative hyperosmotically inducible periplasmic protein	
82	 41.24 -1    93198..93374    	 +	58	28896856	-	VP0082	-	putative transmembrane protein	
83	 42.93       93383..93580    	 +	65	28896857	-	VP0083	-	hypothetical protein	
84	 48.38       93672..94103    	 +	143	28896858	-	VP0084	-	hypothetical protein	
85	 50.79 +1    94138..95775    	 +	545	28896859	-	VP0085	-	hypothetical protein	
86	 40.85 -1    96009..96407    	 -	132	28896860	-	VP0086	-	hypothetical protein	
87	 44.44       96524..96955    	 -	143	28896861	-	VP0087	-	hypothetical protein	
88	 43.19       97224..97649    	 +	141	28896862	-	VP0088	-	hypothetical protein	
89	 50.10 +1    97693..98205    	 +	170	28896863	-	VP0089	-	hypothetical protein	
90	 50.43 +1    98150..98500    	 +	116	28896864	-	VP0090	-	hypothetical protein	
91	 48.30       98510..99538    	 +	342	28896865	-	VP0091	-	putative permease protein	
92	 49.34 +1    99571..102006   	 -	811	28896866	-	VP0092	-	hypothetical protein	
93	 48.95 +1   102220..103128   	 -	302	28896867	-	VP0093	-	conserved hypothetical protein	
94	 49.06 +1   103298..104842   	 +	514	28896868	-	VP0094	-	conserved hypothetical protein	
95	 48.21      104921..105700   	 +	259	28896869	-	VP0095	-	ubiquinone/menaquinone biosynthesis methlytransferase UbiE	
96	 47.96      105712..106347   	 +	211	28896870	-	VP0096	-	conserved hypothetical protein	
97	 48.81      106344..107978   	 +	544	28896871	-	VP0097	-	putative ubiquinone biosynthesis protein AarF	
98	 40.65 -1   108027..108272   	 +	81	28896872	-	VP0098	-	TatA protein	
99	 45.11      108276..108674   	 +	132	28896873	-	VP0099	-	conserved hypothetical protein	
100	 47.37      108743..109483   	 +	246	28896874	-	VP0100	-	conserved hypothetical protein	

 
 45.42 MEAN 
 
 3.45  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.