IslandPath Analysis: Vibrio vulnificus CMCP6 chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.74   STD DEV: 3.42
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 0..1844853
1565 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 48.31           1..801      	 +	266	27366464	-	VV20001	-	ABC-type proline/glycine betaine transport system, permease component	
2	 47.99         804..1997     	 +	397	27366465	-	VV20002	-	ABC-type proline/glycine betaine transport system, ATPase component	
3	 42.58 -1     2080..2544     	 -	154	27366466	-	VV20003	-	Predicted membrane protein	
4	 45.89        2910..4112     	 +	400	27366467	-	VV20004	-	FOG: Transposase	
5	 50.69        4163..6553     	 -	796	27366468	-	VV20005	-	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	
6	 46.64        6709..7542     	 +	277	27366469	-	VV20006	-	Uncharacterized protein conserved in bacteria	
7	 49.51        7587..8600     	 +	337	27366470	-	VV20007	-	Conserved hypothetical protein	
8	 47.48        8667..9896     	 -	409	27366471	-	VV20008	-	Regulatory P domain of the subtilisin-like proprotein convertase	
9	 35.52 -2     9944..10582    	 -	212	27366472	-	VV20009	-	Hypothetical protein predicted by GeneMark	
10	 49.76       11013..12656    	 +	547	27366473	-	VV20010	-	Glycerol-3-phosphate dehydrogenase	
11	 50.11       12650..13966    	 +	438	27366474	-	VV20011	-	Anaerobic glycerol-3-phosphate dehydrogenase	
12	 45.34       13963..15186    	 +	407	27366475	-	VV20012	-	Fe-S oxidoreductase	
13	 46.73       15294..15905    	 -	203	27366476	-	VV20013	-	Predicted phosphatases	
14	 50.42       16008..17084    	 +	358	27366477	-	VV20014	-	Threonine aldolase	
15	 49.34       17071..18126    	 +	351	27366478	-	VV20015	-	Uncharacterized protein	
16	 49.58       18130..19212    	 -	360	27366479	-	VV20016	-	Glucose/sorbosone dehydrogenase	
17	 45.27       19347..19949    	 +	200	27366480	-	VV20018	-	Predicted membrane protein	
18	 49.78       20024..21136    	 -	370	27366481	-	VV20019	-	Alcohol dehydrogenase, class IV	
19	 50.62       21425..22870    	 +	481	27366482	-	VV20020	-	Molecular chaperone	
20	 46.49       22956..23069    	 +	37	27366483	-	VV20021	-	Unknown	
21	 49.82       23123..23401    	 -	92	27366484	-	VV20022	-	Rhodanese-related sulfurtransferase	
22	 49.04       23694..24731    	 +	345	27366485	-	VV20023	-	Unknown	
23	 46.08       24835..25038    	 +	67	27366486	-	VV20024	-	Unknown	
24	 45.64       25062..26012    	 +	316	27366487	-	VV20025	-	Transcriptional regulator, effector-binding domain/component	
25	 44.58       26009..26515    	 +	168	27366488	-	VV20026	-	Unknown	
26	 52.92 +1    26705..27817    	 +	370	27366489	-	VV20027	-	Membrane-fusion protein	
27	 49.17       27817..28119    	 +	100	27366490	-	VV20028	-	Cation/multidrug efflux pump	
28	 51.81 +1    27971..29686    	 +	571	27366491	-	VV20029	-	Cation/multidrug efflux pump	
29	 49.74       29718..30869    	 +	383	27366492	-	VV20030	-	Cation/multidrug efflux pump	
30	 51.73 +1    31025..32296    	 +	423	27366493	-	VV20031	-	Predicted membrane protein	
31	 50.00       32360..34147    	 -	595	27366494	-	VV20032	-	Zinc metalloprotease	
32	 48.35       34626..35657    	 +	343	27366495	-	VV20033	-	Signal recognition particle GTPase	
33	 47.73       35864..36238    	 +	124	27366496	-	VV20034	-	Protein chain release factor A	
34	 46.72       36392..36772    	 -	126	27366497	-	VV20035	-	Conserved hypothetical protein	
35	 48.68       37183..38355    	 -	390	27366498	-	VV20037	-	Amino acid permease	
36	 47.74       38796..39371    	 +	191	27366499	-	VV20038	-	Diadenosine tetraphosphatase	
37	 46.89       39609..39962    	 +	117	27366500	-	VV20040	-	Predicted permease	
38	 46.84       39995..40342    	 +	115	27366501	-	VV20041	-	Predicted permease	
39	 48.43       40537..42444    	 +	635	27366502	-	VV20042	-	Methyl-accepting chemotaxis protein	
40	 47.50       42507..44186    	 +	559	27366503	-	VV20043	-	Glutamate decarboxylase	
41	 51.03       44286..45743    	 -	485	27366504	-	VV20044	-	Uncharacterized protein conserved in bacteria	
42	 45.78       46250..47149    	 +	299	27366505	-	VV20045	-	Predicted permease	
43	 49.74       47205..47789    	 -	194	27366506	-	VV20046	-	Conserved hypothetical protein	
44	 43.87 -1    47954..48304    	 +	116	27366507	-	VV20047	-	Uncharacterized protein conserved in bacteria	
45	 50.83       48597..49202    	 +	201	27366508	-	VV20048	-	Membrane-associated phospholipid phosphatase	
46	 50.55       49314..50312    	 -	332	27366509	-	VV20049	-	Predicted deacylase	
47	 50.49       50469..52001    	 -	510	27366510	-	VV20050	-	Predicted membrane protein	
48	 46.69       52239..53720    	 +	493	27366511	-	VV20051	-	NAD-dependent aldehyde dehydrogenase	
49	 49.22       53679..53999    	 -	106	27366512	-	VV20052	-	Cytochrome c553	
50	 48.51       54072..55079    	 -	335	27366513	-	VV20053	-	Threonine aldolase	
51	 46.32       55098..55613    	 -	171	27366514	-	VV20054	-	NTP pyrophosphohydrolase	
52	 46.28       55889..57556    	 +	555	27366515	-	VV20055	-	MoxR-like ATPase	
53	 46.61       57566..59011    	 +	481	27366516	-	VV20056	-	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain	
54	 45.80       59137..59481    	 +	114	27366517	-	VV20057	-	Uncharacterized protein conserved in bacteria	
55	 46.80       59518..59955    	 +	145	27366518	-	VV20058	-	Predicted membrane protein	
56	 47.19       59988..60485    	 -	165	27366519	-	VV20059	-	Putative threonine efflux protein	
57	 49.05       60892..61311    	 +	139	27366520	-	VV20061	-	ABC-type ribose transport system, auxiliary component	
58	 46.55       61355..62860    	 +	501	27366521	-	VV20062	-	ABC-type sugar transport system, ATPase component	
59	 49.85       62857..63843    	 +	328	27366522	-	VV20063	-	Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component	
60	 50.17       63919..64797    	 +	292	27366523	-	VV20064	-	ABC-type sugar transport system, periplasmic component	
61	 48.53       64953..65873    	 +	306	27366524	-	VV20065	-	Sugar kinase, ribokinase family	
62	 45.88       65894..66913    	 +	339	27366525	-	VV20066	-	Transcriptional regulator	
63	 39.81 -2    67144..67359    	 +	71	27366526	-	VV20067	-	Unknown	
64	 45.53       67792..68775    	 +	327	27366527	-	VV20068	-	FOG: CheY-like receiver	
65	 45.30       68862..69914    	 -	350	27366528	-	VV20069	-	Fatty-acid desaturase	
66	 47.54       70156..70704    	 +	182	27366529	-	VV20070	-	Histone acetyltransferase HPA2	
67	 47.41       70797..71741    	 -	314	27366530	-	VV20071	-	Predicted GTPase	
68	 49.04       72002..73561    	 -	519	27366531	-	VV20072	-	Methyl-accepting chemotaxis protein	
69	 43.11 -1    73768..74688    	 +	306	27366532	-	VV20073	-	Anti-anti-sigma regulatory factor	
70	 46.89       74691..75044    	 +	117	27366533	-	VV20074	-	Anti-anti-sigma regulatory factor	
71	 48.66       75070..75480    	 +	136	27366534	-	VV20075	-	Anti-sigma regulatory factor	
72	 45.13       75483..76067    	 +	194	27366535	-	VV20076	-	Serine phosphatase RsbU, regulator of sigma subunit	
73	 46.51       76060..79278    	 +	1072	27366536	-	VV20077	-	FOG: CheY-like receiver	
74	 46.79       79262..80398    	 +	378	27366537	-	VV20078	-	Response regulator	
75	 47.27       80545..81678    	 +	377	27366538	-	VV20079	-	DNA repair exonuclease	
76	 48.08       81687..84752    	 +	1021	27366539	-	VV20080	-	ATPase involved in DNA repair	
77	 45.57       85287..89036    	 +	1249	27366540	-	VV20082	-	Conserved hypothetical protein	
78	 39.23 -2    89575..90405    	 +	276	27366541	-	VV20083	-	Transcriptional regulator	
79	 40.55 -2    91049..91339    	 +	96	27366542	-	VV20084	-	Flp pilus assembly protein	
80	 37.97 -2    91465..92175    	 +	236	27366543	-	VV20085	-	Unknown	
81	 43.40 -1    92193..93503    	 +	436	27366544	-	VV20086	-	Flp pilus assembly protein	
82	 40.10 -2    93581..93964    	 +	127	27366545	-	VV20087	-	ATPase with chaperone activity	
83	 42.06 -1    93964..95166    	 +	400	27366546	-	VV20088	-	ATPase involved in chromosome partitioning	
84	 47.16       95163..96428    	 +	421	27366547	-	VV20089	-	Flp pilus assembly protein	
85	 40.87 -2    96428..97342    	 +	304	27366548	-	VV20090	-	Flp pilus assembly protein TadB	
86	 39.66 -2    97807..98217    	 +	136	27366549	-	VV20091	-	Flp pilus assembly protein TadC	
87	 42.97 -1    98249..99358    	 +	369	27366550	-	VV20092	-	Flp pilus assembly protein TadD	
88	 41.48 -1    99355..99882    	 +	175	27366551	-	VV20093	-	Unknown	
89	 43.30 -1    99872..100453   	 +	193	27366552	-	VV20094	-	Conserved hypothetical protein	
90	 43.79 -1   100455..101735   	 +	426	27366553	-	VV20095	-	Flp pilus assembly protein TadG	
91	 44.27 -1   101737..102303   	 +	188	27366554	-	VV20096	-	Outer membrane protein	
92	 44.36      102542..102922   	 -	126	27366555	-	VV20097	-	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component	
93	 45.95      103087..104013   	 +	308	27366556	-	VV20099	-	Uncharacterized protein conserved in bacteria	
94	 40.78 -2   104618..104872   	 +	84	27366557	-	VV20100	-	Unknown	
95	 44.99      104938..105735   	 -	265	27366558	-	VV20101	-	Predicted lipase	
96	 50.21      105844..107247   	 -	467	27366559	-	VV20102	-	Di- and tricarboxylate transporter	
97	 47.56      107525..109084   	 +	519	27366560	-	VV20103	-	Signal transduction histidine kinase regulating citrate/malate metabolism	
98	 48.89      109087..109761   	 +	224	27366561	-	VV20104	-	Response regulator of citrate/malate metabolism	
99	 46.30      109922..110515   	 +	197	27366562	-	VV20105	-	Acetyltransferase	
100	 44.96      110576..111031   	 -	151	27366563	-	VV20106	-	NTP pyrophosphohydrolase including oxidative damage repair enzymes	

 
 47.74 MEAN 
 
 3.42  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.