IslandPathversion 1.0

IslandPath Analysis: Vibrio vulnificus CMCP6 chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.05 STD DEV: 3.51
Vibrio vulnificus CMCP6 chromosome I, complete sequence - 0..3281945
2972 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.91 -1        1..1002     	 -	333	27363491	-	VV10001	-	Putative beta-lactamase class A	
2	 42.65 -1     1131..2117     	 -	328	27363492	-	VV10002	-	Putative GTPase	
3	 43.24 -1     2180..3844     	 -	554	27363493	-	VV10003	-	N-acyl-D-aspartate	
4	 47.03        4490..5548     	 -	352	27363494	-	VV10004	-	Uncharacterized conserved protein	
5	 46.67        5621..5965     	 -	114	27363495	-	VV10005	-	Transposase	
6	 44.98        6115..7050     	 -	311	27363496	-	VV10006	-	Predicted permease	
7	 37.74 -2     7740..10256    	 -	838	27363497	-	VV10007	-	Small-conductance mechanosensitive channel	
8	 40.15 -1    10356..10898    	 -	180	27363498	-	VV10008	-	Unknown	
9	 40.12 -1    10998..11969    	 -	323	27363499	-	VV10009	-	ABC-type transport system, periplasmic component	
10	 42.70 -1    11962..12783    	 -	273	27363500	-	VV10010	-	ABC-type transport system, ATPase component	
11	 42.74 -1    12793..13866    	 -	357	27363501	-	VV10011	-	ABC-type transport system, permease component	
12	 42.06 -1    15188..15565    	 +	125	27363502	-	VV10013	-	Predicted hydrolase of HD superfamily	
13	 48.87       15571..16902    	 +	443	27363503	-	VV10014	-	dGTP triphosphohydrolase	
14	 44.66       16924..17532    	 -	202	27363504	-	VV10015	-	Uncharacterized conserved protein	
15	 50.25       17701..18096    	 +	131	27363505	-	VV10016	-	Uncharacterized membrane protein	
16	 39.13 -2    18143..18418    	 -	91	27363506	-	VV10017	-	DNA uptake protein	
17	 45.54       18578..20437    	 -	619	27363507	-	VV10018	-	Parvulin-like peptidyl-prolyl isomerase	
18	 45.92       20614..20907    	 -	97	27363508	-	VV10019	-	Bacterial nucleoid DNA-binding protein	
19	 44.44       21080..21385    	 -	101	27363509	-	VV10020	-	ATP-dependent Lon protease, bacterial type	
20	 47.21       21370..23430    	 -	686	27363510	-	VV10021	-	ATP-dependent Lon protease, bacterial type	
21	 46.45       23549..24829    	 -	426	27363511	-	VV10022	-	ATP-dependent Clp protease, ATP-binding subunit	
22	 44.82       24900..25526    	 -	208	27363512	-	VV10023	-	ATP-dependent Clp protease, proteolytic subunit	
23	 44.96       25632..26930    	 -	432	27363513	-	VV10024	-	FKBP-type peptidyl-prolyl cis-trans isomerase	
24	 48.43       27482..29269    	 +	595	27363514	-	VV10025	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system	
25	 48.32       29271..30611    	 +	446	27363515	-	VV10026	-	Response regulator	
26	 44.56       30706..32664    	 -	652	27363516	-	VV10027	-	Transglutaminase-like enzyme	
27	 49.63       32859..34220    	 -	453	27363517	-	VV10028	-	TRAP-type C4-dicarboxylate transport system, large permease component	
28	 47.28       34224..34904    	 -	226	27363518	-	VV10029	-	TRAP-type C4-dicarboxylate transport system, small permease component	
29	 48.85       34955..35953    	 -	332	27363519	-	VV10030	-	TRAP-type C4-dicarboxylate transport system, periplasmic component	
30	 50.63 +1    36523..37638    	 -	371	27363520	-	VV10032	-	ABC-type sugar transport system, ATPase component	
31	 48.72       37644..38501    	 -	285	27363521	-	VV10033	-	ABC-type sugar transport system, permease component	
32	 49.03       38498..39421    	 -	307	27363522	-	VV10034	-	ABC-type sugar transport system, permease component	
33	 50.32       39527..40774    	 -	415	27363523	-	VV10035	-	ABC-type sugar transport system, periplasmic component	
34	 50.73 +1    40894..42330    	 -	478	27363524	-	VV10036	-	Signal transduction histidine kinase	
35	 50.62 +1    42342..43070    	 -	242	27363525	-	VV10037	-	Response regulator	
36	 51.93 +1    43338..44810    	 -	490	27363526	-	VV10039	-	Uncharacterized conserved protein	
37	 50.03       44888..46522    	 -	544	27363527	-	VV10040	-	Methyl-accepting chemotaxis protein	
38	 49.60       46829..49846    	 -	1005	27363528	-	VV10041	-	RTX toxin	
39	 49.48       50129..51385    	 -	418	27363529	-	VV10042	-	Dehydrogenase	
40	 45.00       51410..52480    	 -	356	27363530	-	VV10043	-	SAM-dependent methyltransferase	
41	 40.34 -1    52511..52867    	 -	118	27363531	-	VV10044	-	Conserved hypothetical protein	
42	 47.83       53029..53697    	 +	222	27363532	-	VV10045	-	Conserved hypothetical protein	
43	 42.82 -1    53694..54452    	 +	252	27363533	-	VV10046	-	1-acyl-sn-glycerol-3-phosphate acyltransferase	
44	 37.55 -2    54547..54807    	 +	86	27363534	-	VV10047	-	Acyl carrier protein	
45	 43.92       54824..55078    	 +	84	27363535	-	VV10048	-	Acyl carrier protein	
46	 46.06       55082..55639    	 +	185	27363536	-	VV10049	-	Predicted membrane protein	
47	 49.20       55647..57014    	 +	455	27363537	-	VV10050	-	Acyl-coenzyme A synthetase	
48	 48.92       57027..57398    	 +	123	27363538	-	VV10051	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	
49	 48.54       57391..59100    	 +	569	27363539	-	VV10052	-	Predicted acyltransferase	
50	 51.01 +1    59084..60622    	 +	512	27363540	-	VV10053	-	Histidine ammonia-lyase	
51	 46.76       60631..61077    	 +	148	27363541	-	VV10054	-	Predicted thioesterase	
52	 48.48       61077..61703    	 +	208	27363542	-	VV10055	-	Conserved hypothetical protein	
53	 50.15       61732..64002    	 +	756	27363543	-	VV10056	-	Predicted exporter	
54	 45.83       64056..64607    	 +	183	27363544	-	VV10057	-	Conserved hypothetical protein	
55	 50.67 +1    64617..65804    	 +	395	27363545	-	VV10058	-	3-oxoacyl-(acyl-carrier-protein) synthase	
56	 49.68       65797..66261    	 +	154	27363546	-	VV10059	-	Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase	
57	 50.83 +1    66258..66983    	 +	241	27363547	-	VV10060	-	Dehydrogenase	
58	 50.98 +1    66980..68209    	 +	409	27363548	-	VV10061	-	3-oxoacyl-(acyl-carrier-protein) synthase	
59	 49.78       68550..69224    	 -	224	27363549	-	VV10063	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit	
60	 48.39       69225..69722    	 -	165	27363550	-	VV10064	-	Unknown	
61	 46.71       70129..70614    	 -	161	27363551	-	VV10065	-	Predicted transcriptional regulator	
62	 43.96       70656..71276    	 -	206	27363552	-	VV10066	-	Bacteriophage phi 1.45 protein-like protein	
63	 43.46 -1    71269..71505    	 -	78	27363553	-	VV10067	-	Unknown	
64	 45.71       71539..71748    	 -	69	27363554	-	VV10068	-	Unknown	
65	 41.57 -1    71783..72037    	 -	84	27363555	-	VV10069	-	Conserved hypothetical protein	
66	 43.33 -1    72030..72269    	 -	79	27363556	-	VV10070	-	Conserved hypothetical protein	
67	 43.12 -1    72273..72824    	 -	183	27363557	-	VV10071	-	ATP-dependent 26S proteasome regulatory subunit	
68	 52.03 +1    72848..75607    	 -	919	27363558	-	VV10072	-	Conserved hypothetical protein	
69	 47.81       75573..75800    	 -	75	27363559	-	VV10074	-	Unknown	
70	 52.00 +1    75862..76161    	 -	99	27363560	-	VV10075	-	Unknown	
71	 50.96 +1    76154..76465    	 -	103	27363561	-	VV10076	-	Unknown	
72	 50.46       76476..76691    	 -	71	27363562	-	VV10077	-	Unknown	
73	 51.06 +1    76679..77383    	 -	234	27363563	-	VV10078	-	Site-specific recombinase XerC	
74	 50.00       77413..77892    	 -	159	27363564	-	VV10079	-	Bacteriophage phi gp55-like protein	
75	 44.97       78084..78272    	 -	62	27363565	-	VV10080	-	Unknown	
76	 48.20       78408..79214    	 +	268	27363566	-	VV10081	-	Predicted transcriptional regulator	
77	 49.79       79555..79797    	 +	80	27363567	-	VV10083	-	Predicted transcriptional regulator	
78	 40.79 -1    79781..81094    	 -	437	27363568	-	VV10084	-	Uncharacterized conserved protein	
79	 52.58 +1    81167..82174    	 -	335	27363569	-	VV10085	-	Phage protein D	
80	 50.24       82165..82371    	 -	68	27363570	-	VV10086	-	P2-like prophage tail protein X	
81	 51.77 +1    82368..82763    	 -	131	27363571	-	VV10087	-	Phage protein U	
82	 54.58 +2    82772..84898    	 -	708	27363572	-	VV10088	-	Unknown	
83	 50.61 +1    84939..85349    	 -	136	27363573	-	VV10089	-	Unknown	
84	 50.71 +1    85359..85853    	 -	164	27363574	-	VV10090	-	Phage tail tube protein FII	
85	 53.06 +1    85886..87046    	 -	386	27363575	-	VV10091	-	Phage tail sheath protein FI	
86	 55.91 +2    87113..87391    	 -	92	27363576	-	VV10092	-	A/G-specific DNA glycosylase	
87	 40.58 -1    87479..89809    	 -	776	27363577	-	VV10093	-	Phage-related tail fiber protein	
88	 48.39       89814..90464    	 -	216	27363578	-	VV10094	-	Bacteriophage P2-related tail formation protein	
89	 50.41       90461..91321    	 -	286	27363579	-	VV10095	-	Phage-related baseplate assembly protein	
90	 50.29       91318..91665    	 -	115	27363580	-	VV10096	-	dTDP-glucose pyrophosphorylase	
91	 55.17 +2    91664..91750    	 +	28	27363581	-	VV10097	-	Unknown	
92	 56.67 +2    91669..91758    	 -	29	27363582	-	VV10098	-	Unknown	
93	 48.77       91931..92416    	 -	161	27363583	-	VV10099	-	Unknown	
94	 49.04       92418..93041    	 -	207	27363584	-	VV10100	-	Phage P2 baseplate assembly protein gpV	
95	 49.44       93041..93574    	 -	177	27363585	-	VV10101	-	Unknown	
96	 48.30       93574..94074    	 -	166	27363586	-	VV10102	-	Unknown	
97	 50.66 +1    94067..94672    	 -	201	27363587	-	VV10103	-	Unknown	
98	 45.45       94681..94977    	 -	98	27363588	-	VV10104	-	Chromosome segregation ATPase	
99	 50.92 +1    94967..95563    	 -	198	27363589	-	VV10105	-	Conserved hypothetical protein	
100	 47.21       95613..96203    	 -	196	27363590	-	VV10106	-	ATPase component of ABC transporter	

 
 47.05 MEAN 
 
 3.51  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.