IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.97 STD DEV: 4.79
Vibrio cholerae chromosome II, complete chromosome - 0..1072315
1093 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 39.26 -1      112..246      	 -	44	15600772	VCA0001	VCA0001	-	hypothetical protein	
2	 46.43        1134..3110     	 +	658	15600773	VCA0002	VCA0002	-	hypothetical protein	
3	 46.83        3330..3944     	 -	204	15600774	VCA0003	VCA0003	-	hypothetical protein	
4	 44.95        4154..4351     	 +	65	15600775	VCA0004	VCA0004	-	hypothetical protein	
5	 41.94        4445..4723     	 +	92	15600776	VCA0005	VCA0005	-	hypothetical protein	
6	 47.36        4811..5530     	 +	239	15600777	VCA0006	VCA0006	S	conserved hypothetical protein	
7	 51.05 +1     5573..6520     	 +	315	15600778	VCA0007	VCA0007	I	3-hydroxyisobutyrate dehydrogenase, putative	
8	 48.38        6624..8285     	 -	553	15600779	VCA0008	VCA0008	N	methyl-accepting chemotaxis protein	
9	 42.56        8288..8482     	 +	64	15600780	VCA0009	VCA0009	-	hypothetical protein	
10	 44.98        8482..8919     	 +	145	15600781	VCA0010	VCA0010	-	conserved hypothetical protein	
11	 50.58        8986..11751    	 -	921	15600782	VCA0011	VCA0011	K	malT regulatory protein	
12	 35.48 -2    11903..11995    	 +	30	15600783	VCA0012	VCA0012	-	hypothetical protein	
13	 52.49 +1    12271..14724    	 +	817	15600784	VCA0013	VCA0013	G	maltodextrin phosphorylase	
14	 52.09 +1    14810..16990    	 +	726	15600785	VCA0014	VCA0014	G	4-alpha-glucanotransferase	
15	 52.38 +1    17196..17426    	 +	76	15600786	VCA0015	VCA0015	-	hypothetical protein	
16	 50.57       17386..19386    	 +	666	15600787	VCA0016	VCA0016	G	1,4-alpha-glucan branching enzyme	
17	 49.13       19781..20299    	 +	172	15600788	VCA0017	VCA0017	R	hcp protein	
18	 53.14 +1    20427..22511    	 +	694	15600789	VCA0018	VCA0018	S	vgrG protein	
19	 46.73       22511..23398    	 +	295	15600790	VCA0019	VCA0019	-	hypothetical protein	
20	 46.38       23395..26652    	 +	1085	15600791	VCA0020	VCA0020	-	hypothetical protein	
21	 41.43       26653..27381    	 +	242	15600792	VCA0021	VCA0021	-	hypothetical protein	
22	 50.00       27484..27885    	 +	133	15600793	VCA0022	VCA0022	R	glutathione S-transfersae-related protein	
23	 46.88       28058..29098    	 -	346	15600794	VCA0023	VCA0023	S	hypothetical protein	
24	 47.53       29214..30206    	 -	330	15600795	VCA0024	VCA0024	R	conserved hypothetical protein	
25	 49.46       30484..31872    	 +	462	15600796	VCA0025	VCA0025	P	transporter, NadC family	
26	 45.60       31968..32603    	 -	211	15600797	VCA0026	VCA0026	S	conserved hypothetical protein	
27	 49.53       33035..35584    	 +	849	15600798	VCA0027	VCA0027	G	chitinase	
28	 45.10       35606..35860    	 -	84	15600799	VCA0028	VCA0028	-	hypothetical protein	
29	 47.89       35950..36684    	 +	244	15600800	VCA0029	VCA0029	K	transcriptional regulator, putative	
30	 46.14       36685..37527    	 +	280	15600801	VCA0030	VCA0030	-	hypothetical protein	
31	 45.53       37648..39213    	 -	521	15600802	VCA0031	VCA0031	N	methyl-accepting chemotaxis protein	
32	 44.21       39311..39871    	 -	186	15600803	VCA0032	VCA0032	-	hypothetical protein	
33	 48.53       40280..42154    	 +	624	15600804	VCA0033	VCA0033	R	hypothetical protein	
34	 46.85       42214..43086    	 -	290	15600805	VCA0034	VCA0034	T	conserved hypothetical protein	
35	 47.52       43202..44026    	 +	274	15600806	VCA0035	VCA0035	I	phosphatidylglycerophosphatase B, putative	
36	 48.85       44080..45297    	 -	405	15600807	VCA0036	VCA0036	E	sodium/dicarboxylate symporter	
37	 47.24       45638..46090    	 -	150	15600808	VCA0037	VCA0037	S	conserved hypothetical protein	
38	 45.70       46104..46685    	 -	193	15600809	VCA0038	VCA0038	R	Sco1-related protein	
39	 49.41       46682..47104    	 -	140	15600810	VCA0039	VCA0039	-	hypothetical protein	
40	 48.11       47303..48229    	 -	308	15600811	VCA0040	VCA0040	S	conserved hypothetical protein	
41	 46.13       48768..49994    	 +	408	15600812	VCA0041	VCA0041	E	sodium/glutamate symporter	
42	 46.64       50073..50831    	 -	252	15600813	VCA0042	VCA0042	-	hypothetical protein	
43	 48.42       50963..51247    	 +	94	15600814	VCA0043	VCA0043	R	conserved hypothetical protein	
44	 48.95       51480..53624    	 +	714	15600815	VCA0044	VCA0044	-	hypothetical protein	
45	 48.44       53551..54735    	 +	394	15600816	VCA0045	VCA0045	M	protease-related protein	
46	 50.41       54727..54849    	 -	40	15600817	VCA0046	VCA0046	-	hypothetical protein	
47	 49.51       54930..56060    	 -	376	15600818	VCA0047	VCA0047	Q	conserved hypothetical protein	
48	 43.33       56060..56449    	 -	129	15600819	VCA0048	VCA0048	-	conserved hypothetical protein	
49	 47.05       56584..57465    	 -	293	15600820	VCA0049	VCA0049	T	GGDEF family protein	
50	 49.38       57462..58190    	 -	242	15600821	VCA0050	VCA0050	-	hypothetical protein	
51	 48.69       58144..59667    	 -	507	15600822	VCA0051	VCA0051	-	hypothetical protein	
52	 49.84       59786..61348    	 -	520	15600823	VCA0052	VCA0052	-	hypothetical protein	
53	 47.43       61320..62057    	 -	245	15600824	VCA0053	VCA0053	F	purine nucleoside phosphorylase	
54	 35.56 -2    62116..62295    	 -	59	15600825	VCA0054	VCA0054	-	hypothetical protein	
55	 47.88       62337..63305    	 +	322	15600826	VCA0055	VCA0055	S	conserved hypothetical protein	
56	 51.00 +1    63295..64092    	 +	265	15600827	VCA0056	VCA0056	K	transcriptional regulator, MerR family	
57	 50.78 +1    64102..65511    	 +	469	15600828	VCA0057	VCA0057	L	deoxyribodipyrimidine photolyase	
58	 47.88       65520..66440    	 +	306	15600829	VCA0058	VCA0058	S	conserved hypothetical protein	
59	 45.00       66526..66885    	 -	119	15600830	VCA0059	VCA0059	-	major outer membrane lipoprotein	
60	 44.07       67082..67258    	 +	58	15600831	VCA0060	VCA0060	-	hypothetical protein	
61	 47.98       67304..68662    	 +	452	15600832	VCA0061	VCA0061	L	ATP-dependent RNA helicase, DEAD box family	
62	 42.34       68659..68769    	 -	36	15600833	VCA0062	VCA0062	-	hypothetical protein	
63	 51.05 +1    68875..70872    	 +	665	15600834	VCA0063	VCA0063	E	protease II	
64	 50.56       70872..73013    	 +	713	15600835	VCA0064	VCA0064	P	TonB system receptor, putative	
65	 50.33       73023..75329    	 +	768	15600836	VCA0065	VCA0065	-	hypothetical protein	
66	 50.59       75326..76768    	 +	480	15600837	VCA0066	VCA0066	-	hypothetical protein	
67	 52.41 +1    76765..77325    	 +	186	15600838	VCA0067	VCA0067	-	hypothetical protein	
68	 48.48       77459..79102    	 -	547	15600839	VCA0068	VCA0068	N	methyl-accepting chemotaxis protein	
69	 38.38 -1    79249..79347    	 +	32	15600840	VCA0069	VCA0069	-	hypothetical protein	
70	 46.44       79395..80294    	 +	299	15600841	VCA0070	VCA0070	P	phosphate ABC transporter, periplasmic phosphate-binding protein	
71	 50.20       80309..81292    	 +	327	15600842	VCA0071	VCA0071	P	phosphate ABC transporter, permease protein	
72	 48.16       81292..82161    	 +	289	15600843	VCA0072	VCA0072	P	phosphate ABC transporter, permease protein	
73	 47.62       82190..82945    	 +	251	15600844	VCA0073	VCA0073	P	phosphate ABC transporter, ATP-binding protein	
74	 45.14       82992..84092    	 -	366	15600845	VCA0074	VCA0074	T	GGDEF family protein	
75	 41.88       84089..84556    	 -	155	15600846	VCA0075	VCA0075	S	hypothetical protein	
76	 48.95       84847..86223    	 -	458	15600847	VCA0076	VCA0076	S	conserved hypothetical protein	
77	 49.58       86658..88319    	 -	553	15600848	VCA0077	VCA0077	P	sulfate permease family protein	
78	 40.84 -1    88624..88956    	 +	110	15600849	VCA0078	VCA0078	-	hypothetical protein	
79	 47.80       89148..90440    	 +	430	15600850	VCA0079	VCA0079	M	conserved hypothetical protein	
80	 42.65       90558..92381    	 -	607	15600851	VCA0080	VCA0080	T	GGDEF family protein	
81	 36.19 -2    92442..92546    	 +	34	15600852	VCA0081	VCA0081	-	hypothetical protein	
82	 48.87       92604..93491    	 -	295	15600853	VCA0082	VCA0082	K	transcriptional regulator, LysR family	
83	 48.84       93581..94792    	 +	403	15600854	VCA0083	VCA0083	G	multidrug resistance protein D	
84	 47.43       94834..95280    	 -	148	15600855	VCA0084	VCA0084	K	soxR protein	
85	 46.63       95459..96661    	 +	400	15600856	VCA0085	VCA0085	-	hypothetical protein	
86	 45.67       96762..97142    	 +	126	15600857	VCA0086	VCA0086	-	hypothetical protein	
87	 38.18 -1    97216..97380    	 +	54	15600858	VCA0087	VCA0087	-	hypothetical protein	
88	 49.41       97546..98820    	 -	424	15600859	VCA0088	VCA0088	C	proton/glutamate symporter	
89	 37.98 -1    98848..98976    	 +	42	15600860	VCA0089	VCA0089	-	hypothetical protein	
90	 51.34 +1    99076..99969    	 -	297	15600861	VCA0090	VCA0090	G	conserved hypothetical protein	
91	 46.13      100199..100495   	 +	98	15600862	VCA0091	VCA0091	R	conserved hypothetical protein	
92	 45.40      100666..101295   	 -	209	15600863	VCA0092	VCA0092	-	hypothetical protein	
93	 41.38      101395..101568   	 +	57	15600864	VCA0093	VCA0093	-	hypothetical protein	
94	 42.02      101796..102152   	 +	118	15600865	VCA0094	VCA0094	K	conserved hypothetical protein	
95	 47.07      102421..103119   	 +	232	15600866	VCA0095	VCA0095	-	hypothetical protein	
96	 46.41      103162..104385   	 +	407	15600867	VCA0096	VCA0096	-	hypothetical protein	
97	 49.09      104398..105114   	 -	238	15600868	VCA0097	VCA0097	F	conserved hypothetical protein	
98	 47.78      105513..106820   	 +	435	15600869	VCA0098	VCA0098	H	nicotinate phosphoribosyltransferase	
99	 49.76      106851..107891   	 +	346	15600870	VCA0099	VCA0099	R	oxidoreductase, Gfo/Idh/MocA family	
100	 49.19      107928..108299   	 -	123	15600871	VCA0100	VCA0100	P	phage shock protein E	

 
 45.97 MEAN 
 
 4.79  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.