IslandPath Analysis: Vibrio cholerae chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.42   STD DEV: 4.26
Vibrio cholerae chromosome I, complete chromosome - 0..2961149
2742 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.90 -2      235..402      	 -	55	15640033	-	VC0001	-	hypothetical protein	
2	 50.11         372..806      	 -	144	15640034	-	VC0002	C	mioC protein	
3	 52.47 +1      816..2210     	 -	464	15640035	-	VC0003	R	thiophene and furan oxidation protein ThdF	
4	 49.20        2271..3896     	 -	541	15640036	-	VC0004	N	inner membrane protein, 60 kDa	
5	 46.51        3899..4156     	 -	85	15640037	-	VC0005	S	conserved hypothetical protein	
6	 44.82        4123..4479     	 -	118	15640038	-	VC0006	J	ribonuclease P protein component	
7	 50.00        4492..4629     	 -	45	15640039	-	VC0007	J	ribosomal protein L34	
8	 49.46        4871..5608     	 -	245	15640040	-	VC0008	E	amino acid ABC transporter, ATP-binding protein	
9	 50.30        5605..6276     	 -	223	15640041	-	VC0009	E	amino acid ABC transproter, permease protein	
10	 47.52        6354..7100     	 -	248	15640042	-	VC0010	E	amino acid ABC transporter, periplasmic amino acid-binding portion	
11	 41.86 -1     7224..7352     	 +	42	15640043	-	VC0011	-	hypothetical protein	
12	 50.67        7397..8815     	 +	472	15640044	-	VC0012	L	chromosomal DNA replication initiator DnaA	
13	 49.77        8873..9973     	 +	366	15640045	-	VC0013	L	DNA polymerase III, beta chain	
14	 47.53        9991..11082    	 +	363	15640046	-	VC0014	L	recF protein	
15	 50.50       11103..13520    	 +	805	15640047	-	VC0015	L	DNA gyrase, subunit B	
16	 49.59       13876..14367    	 +	163	15640048	-	VC0016	-	hypothetical protein	
17	 43.59       14377..14493    	 +	38	15640049	-	VC0017	-	hypothetical protein	
18	 45.66       14769..15206    	 +	145	15640050	-	VC0018	O	16 kDa heat shock protein A	
19	 49.88       15294..16550    	 -	418	15640051	-	VC0019	E	valine-pyruvate aminotransferase	
20	 52.06 +1    16869..18935    	 -	688	15640052	-	VC0020	J	glycyl-tRNA synthetase, beta chain	
21	 49.95       18950..19942    	 -	330	15640053	-	VC0021	J	glycyl-tRNA synthetase, alpha chain	
22	 47.10       20235..20837    	 +	200	15640054	-	VC0022	S	conserved hypothetical protein	
23	 47.67       20943..21200    	 +	85	15640055	-	VC0023	-	NADH dehydrogenase subunit II-related protein	
24	 49.00       21287..21535    	 -	82	15640056	-	VC0024	O	conserved hypothetical protein	
25	 46.27       21656..21856    	 +	66	15640057	-	VC0025	-	hypothetical protein	
26	 52.09 +1    22028..23008    	 -	326	15640058	-	VC0026	C	zinc-binding alcohol dehydrogenase	
27	 52.32 +1    23256..24788    	 -	510	15640059	-	VC0027	E	threonine dehydratase	
28	 54.72 +1    24792..26633    	 -	613	15640060	-	VC0028	E	dihydroxy-acid dehydratase	
29	 53.65 +1    26643..27602    	 -	319	15640061	-	VC0029	E	branched-chain amino acid amiotransferase	
30	 45.61       27593..27877    	 -	94	15640062	-	VC0030	E	acetolactate synthase II, small subunit	
31	 55.31 +1    27889..29535    	 -	548	15640063	-	VC0031	E	acetolactate synthase II, large subunit	
32	 53.61 +1    30069..31592    	 +	507	15640064	-	VC0032	O	ComM-related protein	
33	 49.94       31682..32566    	 +	294	15640065	-	VC0033	I	conserved hypothetical protein	
34	 46.10       32644..33246    	 -	200	15640066	-	VC0034	O	thiol:disulfide interchange protein	
35	 49.36       33277..34299    	 -	340	15640067	-	VC0035	R	conserved hypothetical protein	
36	 49.06       34311..35798    	 -	495	15640068	-	VC0036	C	FixG-related protein	
37	 42.29 -1    36152..36430    	 -	92	15640069	-	VC0037	S	conserved hypothetical protein	
38	 52.38 +1    36527..36694    	 -	55	15640070	-	VC0038	-	hypothetical protein	
39	 51.25       36928..37770    	 +	280	15640071	-	VC0039	-	SpoOM-related protein	
40	 47.22       37848..38495    	 +	215	15640072	-	VC0040	R	hemolysin, putative	
41	 50.08       38534..39190    	 -	218	15640073	-	VC0041	-	conserved hypothetical protein	
42	 51.31       39103..40548    	 -	481	15640074	-	VC0042	P	potassium uptake protein TrkH	
43	 52.21 +1    40560..41936    	 -	458	15640075	-	VC0043	P	potassium uptake protein TrkA	
44	 54.41 +1    41998..43302    	 -	434	15640076	-	VC0044	J	sun protein	
45	 51.48       43334..44281    	 -	315	15640077	-	VC0045	J	methionyl-tRNA formyltransferase	
46	 48.04       44299..44808    	 -	169	15640078	-	VC0046	J	polypeptide deformylase	
47	 50.17       44900..46075    	 +	391	15640079	-	VC0047	S	conserved hypothetical protein	
48	 51.34       46075..47190    	 +	371	15640080	-	VC0048	L	smf protein	
49	 46.54       47193..47669    	 +	158	15640081	-	VC0049	S	smg protein	
50	 49.04       47679..48251    	 +	190	15640082	-	VC0050	L	DNA topoisomerase I-related protein	
51	 51.23       48324..49457    	 -	377	15640083	-	VC0051	F	phosphoribosylaminoimidazole carboxylase, ATPase subunit	
52	 52.67 +1    49461..49946    	 -	161	15640084	-	VC0052	F	phosphoribosylaminoimidazole carboxylase, catalytic subunit	
53	 43.65       49961..50086    	 +	41	15640085	-	VC0053	-	hypothetical protein	
54	 53.62 +1    50104..50670    	 +	188	15640086	-	VC0054	J	Sua5/YciO/YrdC family protein	
55	 49.89       50689..51606    	 +	305	15640087	-	VC0055	H	coproporphyrinogen III oxidase, aerobic	
56	 50.06       51668..52504    	 +	278	15640088	-	VC0056	E	shikimate 5-dehydrogenase	
57	 44.93       52501..52776    	 +	91	15640089	-	VC0057	-	conserved hypothetical protein	
58	 47.75       52757..53311    	 -	184	15640090	-	VC0058	R	carbonic anhydrase, family 3	
59	 40.43 -1    53497..53637    	 +	46	15640091	-	VC0059	-	hypothetical protein	
60	 43.31       59356..59736    	 +	126	15640092	-	VC0060	D	crcB protein	
61	 47.57       59988..61925    	 +	645	15640093	-	VC0061	H	thiamin biosynthesis protein ThiC	
62	 46.41       61929..63251    	 +	440	15640094	-	VC0062	H	thiamin-phosphate pyrophosphorylase	
63	 50.32       63238..64014    	 +	258	15640095	-	VC0063	H	thiF protein	
64	 48.45       63957..64214    	 +	85	15640096	-	VC0064	H	thiS protein	
65	 50.45       64220..64990    	 +	256	15640097	-	VC0065	F	thiG protein	
66	 47.80       64987..66099    	 +	370	15640098	-	VC0066	H	thiH protein	
67	 50.56       66324..68117    	 -	597	15640099	-	VC0067	E	aminopeptidase P	
68	 47.46       68250..69233    	 -	327	15640100	-	VC0068	K	transcriptional regulator, LysR family	
69	 50.12       69296..70498    	 +	400	15640101	-	VC0069	G	multidrug resistance protein, putative	
70	 46.67       70602..70886    	 +	94	15640102	-	VC0070	-	hypothetical protein	
71	 45.45       70975..71436    	 -	153	15640103	-	VC0071	K	transcriptional regulator AsnC	
72	 50.11       71512..73818    	 +	768	15640104	-	VC0072	T	sensory box/GGDEF family protein	
73	 52.22 +1    73785..74663    	 +	292	15640105	-	VC0073	Q	conserved hypothetical protein	
74	 50.77       74781..75170    	 +	129	15640106	-	VC0074	-	hypothetical protein	
75	 48.31       75266..76153    	 -	295	15640107	-	VC0075	G	MadN protein	
76	 48.59       76210..76635    	 -	141	15640108	-	VC0076	T	universal stress protein A	
77	 43.75       76681..76776    	 +	31	15640109	-	VC0077	-	hypothetical protein	
78	 44.51       76782..77327    	 +	181	15640110	-	VC0078	P	ferritin	
79	 47.53       77403..77726    	 +	107	15640111	-	VC0079	-	conserved hypothetical protein	
80	 51.96 +1    77859..79055    	 +	398	15640112	-	VC0080	R	conserved hypothetical protein	
81	 50.66       79052..79963    	 -	303	15640113	-	VC0081	G	conserved hypothetical protein	
82	 50.58       80077..81618    	 +	513	15640114	-	VC0082	S	conserved hypothetical protein	
83	 49.55       81663..82445    	 +	260	15640115	-	VC0083	H	ubiquinone/menaquinone biosynthesis methlytransferase UbiE	
84	 50.80       82454..83077    	 +	207	15640116	-	VC0084	S	conserved hypothetical protein	
85	 49.17       83074..84708    	 +	544	15640117	-	VC0085	R	ubiquinone biosynthesis protein AarF, putative	
86	 44.58       84768..85016    	 +	82	15640118	-	VC0086	N	tatA protein	
87	 52.99 +1    85020..85421    	 +	133	15640119	-	VC0087	N	conserved hypothetical protein	
88	 48.47       85510..86262    	 +	250	15640120	-	VC0088	N	conserved hypothetical protein	
89	 47.70       86574..87575    	 +	333	15640121	-	VC0089	P	cytochrome c551 peroxidase	
90	 51.28       87681..89045    	 -	454	15640122	-	VC0090	Q	DNA-damage-inducible protein F	
91	 50.34       89116..89985    	 -	289	15640123	-	VC0091	Q	O-methyltransferase-related protein	
92	 52.70 +1    90013..90642    	 -	209	15640124	-	VC0092	K	LexA repressor	
93	 51.72 +1    90953..93388    	 +	811	15640125	-	VC0093	I	glycerol-3-phosphate acyltransferase	
94	 49.59       93464..94318    	 -	284	15640126	-	VC0094	H	4-hydroxybenzoate octaprenyltransferase	
95	 46.74       94319..94870    	 -	183	15640127	-	VC0095	H	chorismate--pyruvate lyase	
96	 39.39 -1    94893..94991    	 -	32	15640128	-	VC0096	-	hypothetical protein	
97	 45.74       95062..95472    	 +	136	15640129	-	VC0097	N	flagellar protein FliL, putative	
98	 51.67       95592..97571    	 -	659	15640130	-	VC0098	T	methyl-accepting chemotaxis protein	
99	 48.32       97946..98779    	 -	277	15640131	-	VC0099	R	glpG protein	
100	 46.11       98786..99106    	 -	106	15640132	-	VC0100	P	glpE protein	

 
 47.42 MEAN 
 
 4.26  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.