IslandPath Analysis: Ureaplasma urealyticum serovar3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 25.85   STD DEV: 3.84
Ureaplasma urealyticum, complete genome - 0..751719
614 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 24.67           1..1374     	 +	457	13357559	dnaA	UU001	L	chromosomal replication initiator protein	
2	 27.78        1515..1802     	 +	95	13357560	rpL31	UU002	J	ribosomal protein L31	
3	 32.04 +1     1935..3014     	 +	359	13357561	prfA	UU003	J	peptide chain release factor 1	
4	 22.45        3014..3886     	 +	290	13358170	hemK	UU004m	J	hypothetical protein	
5	 28.29        3873..4427     	 +	184	13358171	-	UU005m	J	hypothetical protein	
6	 30.54 +1     4431..4895     	 +	154	13357562	lacA	UU006	G	galactoside O-acetyltransferase	
7	 30.66 +1     4991..5551     	 +	186	13357563	-	UU007	-	unique hypothetical	
8	 32.49 +1     5554..6030     	 +	158	13357564	-	UU008	-	unique hypothetical	
9	 25.75        6175..7797     	 +	540	13357565	mgtE	UU009	P	Mg2+ ion transporter	
10	 32.34 +1     7954..8454     	 +	166	13357566	rpL10	UU010	J	ribosomal protein L10	
11	 35.25 +2     8479..8844     	 +	121	13357567	rpL7/L12	UU011	J	ribosomal protein L7/L12	
12	 28.82        9069..10619    	 -	516	13357568	-	UU012	N	unique hypothetical membrane lipoprotein	
13	 30.32 +1    11005..11934    	 -	309	13357569	rbsC-2	UU013	R	ribose/galactose ABC transporter	
14	 25.51       11934..14144    	 -	736	13357570	rbsC-1	UU014	R	ribose/galactose ABC transporter (N-term domain)	
15	 28.48       14147..15754    	 -	535	13357571	mglA	UU015	R	methylgalactoside permease ATP-binding protein	
16	 30.16 +1    15810..17384    	 -	524	13357572	-	UU016	N	hypothetical membrane lipoprotein	
17	 26.82       17555..18352    	 -	265	13357573	-	UU017	L	hypothetical	
18	 25.59       18354..19670    	 -	438	13357574	thdF	UU018	R	GTP-binding protein in thiophene and furan oxidation	
19	 20.00 -1    19673..20467    	 -	264	13357575	dnaH	UU019	L	DNA polymerase III delta subunit	
20	 24.07       20468..21169    	 -	233	13357576	tmk	UU020	F	thymidylate kinase	
21	 24.02       21141..22010    	 -	289	13357577	lip3	UU021	R	triacylglycerol lipase	
22	 23.95       22110..23132    	 -	340	13357578	fatC-1	UU022	P	ferrichrome ABC transporter	
23	 25.24       23133..24158    	 -	341	13357579	fatD-1	UU023	P	ferrichrome ABC transporter	
24	 23.64       24175..25587    	 -	470	13357580	ABCsbp-1	UU024	-	putative ABC substrate-binding protein - iron	
25	 25.82       25611..26714    	 -	367	13357581	fecC	UU025	P	ferrichrome ABC transporter	
26	 29.05       26879..27928    	 -	349	13357582	rpS2	UU026	J	ribosomal protein S2	
27	 23.15       28028..28999    	 -	323	13357583	ABCsbp-2	UU027	-	putative ABC substrate-binding protein - iron	
28	 23.29       29014..29760    	 -	248	13357584	ABCsbp-3	UU028	-	putative ABC substrate-binding protein - iron	
29	 24.61       29766..31886    	 -	706	13357585	-	UU029	R	hypothetical	
30	 25.04       31996..34239    	 +	747	13357586	-	UU030	-	unique hypothetical	
31	 20.26 -1    34634..35398    	 +	254	13357587	-	UU031	-	unique hypothetical membrane lipoprotein	
32	 21.97 -1    35490..36017    	 -	175	13357588	-	UU032	-	unique hypothetical	
33	 24.47       36025..36498    	 -	157	13357589	-	UU033	S	hypothetical	
34	 25.00       36548..37615    	 -	355	13357590	-	UU034	-	unique hypothetical	
35	 22.92       37719..38477    	 -	252	13357591	-	UU035	-	unique hypothetical	
36	 20.14 -1    38712..39545    	 -	277	13357592	-	UU036	L	conserved hypothetical	
37	 21.72 -1    39640..39906    	 -	88	13357593	-	UU037	-	unique hypothetical	
38	 25.07       40330..41721    	 +	463	13357594	-	UU038	K	conserved hypothetical	
39	 29.92 +1    41797..43641    	 +	614	13357595	gidA	UU039	D	glucose inhibited division protein	
40	 24.19       43700..44344    	 +	214	13357596	gidB	UU040	M	glucose inhibited division protein B	
41	 22.59       44367..44729    	 +	120	13357597	-	UU041	-	conserved hypothetical	
42	 22.30       44729..45145    	 +	138	13357598	-	UU042	-	unique hypothetical	
43	 28.37       45312..47828    	 +	838	13357599	-	UU043	-	conserved hypothetical membrane lipoprotein	
44	 31.08 +1    47851..50199    	 +	782	13357600	-	UU044	-	unique hypothetical	
45	 27.15       50230..52734    	 +	834	13357601	-	UU045	-	conserved hypothetical membrane lipoprotein	
46	 31.31 +1    52771..55146    	 +	791	13357602	-	UU046	-	unique hypothetical	
47	 27.04       55161..57764    	 +	867	13357603	-	UU047	-	conserved hypothetical ATP/GTP-binding protein	
48	 22.27       57794..59284    	 +	496	13357604	-	UU048	-	unique hypothetical	
49	 20.16 -1    59271..59786    	 +	171	13357605	-	UU049	-	unique hypothetical	
50	 20.55 -1    59789..60703    	 +	304	13357606	-	UU050	-	unique hypothetical	
51	 19.88 -1    60660..61172    	 +	170	13357607	-	UU051	-	unique hypothetical	
52	 23.87       61162..63327    	 +	721	13357608	-	UU052	-	unique hypothetical	
53	 27.60       63343..64878    	 +	511	13357609	atpA-1	UU053	C	ATP synthase alpha chain	
54	 28.50       64878..66242    	 +	454	13357610	atpD-1	UU054	C	ATP synthase beta chain	
55	 25.17       66507..69923    	 +	1138	13357611	mnuA-1	UU055	-	membrane nuclease A - hypothetical	
56	 25.33       70018..70242    	 +	74	13357612	-	UU056	N	unique hypothetical	
57	 27.38       70243..72408    	 +	721	13357613	vacB	UU057	K	virulence associated protein - Exoribonucleases	
58	 27.70       72608..73033    	 +	141	13357614	smpB	UU058	O	small protein B	
59	 25.91       73014..74792    	 +	592	13357615	msbA-1	UU059	Q	transport ATP-binding protein	
60	 25.71       74767..76563    	 +	598	13357616	msbA-2	UU060	Q	transport ATP-binding protein	
61	 23.02       76623..77417    	 +	264	13357617	-	UU061	-	conserved hypothetical	
62	 27.40       77527..79008    	 +	493	13357618	lysS	UU062	J	lysyl-tRNA synthetase	
63	 26.00       79296..79772    	 -	158	13357619	-	UU063	F	unique hypothetical	
64	 19.48 -1    79940..80206    	 -	88	13357620	-	UU064	-	unique hypothetical	
65	 26.44       80231..82057    	 -	608	13357621	pepF-1	UU065	E	oligoendopeptidase F - zinc metalloprotease	
66	 23.81       82145..83026    	 +	293	13357622	pta	UU066	C	phosphotransacetylase	
67	 20.16 -1    83073..83687    	 -	204	13357623	-	UU067	K	unique hypothetical	
68	 26.64       83725..84381    	 -	218	13357624	-	UU068	-	conserved hypothetical	
69	 23.52       84472..85347    	 -	291	13357625	fecE	UU069	P	iron(III) dicitrate transport ATP-binding protein	
70	 26.52       85352..86422    	 -	356	13357626	hmuU-1	UU070	P	hemin transport system permease	
71	 25.56       86441..88408    	 -	655	13357627	ABCsbp-4	UU071	-	putative ABC substrate-binding protein - iron	
72	 25.58       88641..89969    	 +	442	13357628	hlyC	UU072	N	hemolysin	
73	 24.17       89987..90979    	 -	330	13357629	-	UU073	S	conserved hypothetical	
74	 29.35       90945..91874    	 -	309	13357630	trxB	UU074	O	thioredoxin reductase	
75	 29.46       91893..92900    	 -	335	13357631	lgt	UU075	M	prolipoprotein diacylglyceryl transferase	
76	 26.75       92901..93827    	 -	308	13357632	hprK	UU076	T	hpr serine/threonine protein kinase	
77	 24.25       93842..94843    	 -	333	13357633	-	UU077	D	conserved hypothetical	
78	 25.85       94806..95366    	 -	186	13357634	pth	UU078	J	peptidyl-tRNA hydrolase	
79	 23.60       95588..96727    	 +	379	13357635	dnaN	UU079	L	DNA pol III beta chain	
80	 22.83       96865..97083    	 +	72	13357636	-	UU080	S	conserved hypothetical	
81	 30.72 +1    97095..99047    	 +	650	13357637	gyrB	UU081	L	DNA topoisomerase - DNA gyrase subunit B	
82	 29.73 +1    99069..101591   	 +	840	13357638	gyrA	UU082	L	DNA topoisomerase chain A - DNA gyrase A subunit	
83	 28.87      101699..102169   	 +	156	13357639	-	UU083	R	conserved hypothetical	
84	 27.66      102208..103212   	 +	334	13357640	recA	UU084	L	recombination protein	
85	 27.14      103244..104665   	 +	473	13357641	-	UU085	R	conserved hypothetical	
86	 26.47      104864..105562   	 -	232	13357642	dgk	UU086	F	deoxyguanosine kinase	
87	 22.69      105760..107553   	 +	597	13357643	dnaX	UU087	L	DNA polymerase III gamma-tau subunits	
88	 28.33      107561..107860   	 +	99	13357644	-	UU088	S	conserved hypothetical	
89	 26.73      107869..108474   	 +	201	13357645	recR	UU089	L	recombinational DNA repair protein	
90	 27.78      108529..108798   	 +	89	13357646	-	UU089.1	-	conserved hypothetical	
91	 27.92      108844..110598   	 +	584	13357647	-	UU090	S	conserved hypothetical	
92	 30.36 +1   111214..112560   	 +	448	13357648	ffh	UU091	N	signal recognition particle	
93	 21.81 -1   112772..114559   	 +	595	13357649	-	UU092	R	unique hypothetical membrane lipoprotein	
94	 24.89      114559..115269   	 +	236	13357650	bcrA	UU093	Q	ABC transporter	
95	 23.54      115391..118555   	 +	1054	13357651	-	UU094	-	unique hypothetical membrane lipoprotein	
96	 24.19      120158..123295   	 -	1045	13357652	hsdR	UU095	L	type I restriction enzyme R protein	
97	 23.18      123316..123837   	 -	173	13357653	hsdS-1	UU096	L	type I restriction enzyme S protein (fragment)	
98	 29.05      123975..124184   	 -	69	13357654	hsdS-2	UU097	L	type I restriction enzyme S protein (fragment)	
99	 26.84      124317..125363   	 +	348	13357655	hsdM-1	UU098	L	type I restriction enzyme M protein (fragment)	
100	 23.73      125367..126272   	 +	301	13357656	hsdS-3	UU099	L	type I restriction enzyme S protein (fragment)	

 
 25.85 MEAN 
 
 3.84  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.