IslandPath Analysis: Thermoplasma volcanium



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium, complete genome - 0..1584804
1499 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.90         110..1192     	 +	360	13540832	-	TVN0001	R	Predicted GTPase	
2	 41.19        1433..3442     	 +	669	13540833	-	TVN0002	C	Formate dehydrogenase, alpha subunit	
3	 41.04        3439..4359     	 +	306	13540834	-	TVN0003	C	Ferredoxin subunit of sulfhydrogenase II	
4	 44.90 +1     4397..5131     	 +	244	13540835	-	TVN0004	H	Anaerobic sulfite reduction protein B	
5	 39.90        5588..7018     	 +	476	13540836	-	TVN0005	G	Phosphate transport permease	
6	 45.34 +1     7048..7455     	 -	135	13540837	-	TVN0006	L	Predicted inactivated transposase	
7	 40.18        7691..8143     	 +	150	13540838	-	TVN0007	J	30S ribosomal protein S16A	
8	 38.40        8127..8501     	 +	124	13540839	-	TVN0008	R	DNA-binding protein	
9	 44.23        8498..8653     	 +	51	13540840	-	TVN0009	J	50S ribosomal protein L39E	
10	 37.41 -1     8663..8932     	 +	89	13540841	-	TVN0010	J	50S ribosomal protein L31E	
11	 40.94        8973..9629     	 +	218	13540842	-	TVN0011	J	Translation initiation factor 6 (EIF6)	
12	 43.71        9630..10130    	 -	166	13540843	-	TVN0012	F	Orotate phosphoribosyltransferase	
13	 40.22       10229..12073    	 +	614	13540844	-	TVN0013	L	Rad3-related DNA helicase	
14	 43.20       12192..12647    	 +	151	13540845	-	TVN0014	R	N-terminal acetyltransferase complex, Ard1 subunit	
15	 44.47 +1    12665..13867    	 -	400	13540846	-	TVN0015	S	Uncharacterized conserved protein	
16	 41.09       14001..15470    	 +	489	13540847	-	TVN0016	F	AICAR transformylase/IMP cyclohydrolase	
17	 41.80       15475..16230    	 -	251	13540848	-	TVN0017	I	Enoyl-CoA hydratase	
18	 38.59       16337..17173    	 -	278	13540849	-	TVN0018	S	Uncharacterized conserved protein	
19	 43.49       17184..19496    	 -	770	13540850	-	TVN0019	L	DNA topoisomerase IA	
20	 41.39       19502..19774    	 -	90	13540851	-	TVN0020	C	Acylphosphatase	
21	 36.17 -1    19869..21347    	 -	492	13540852	-	TVN0021	R	Predicted permease	
22	 41.28       21463..22242    	 -	259	13540853	-	TVN0022	Q	ABC-type multidrug transport system, ATPase component	
23	 40.06       22763..23743    	 -	326	13540854	-	TVN0023	S	Uncharacterized conserved membrane protein	
24	 44.96 +1    23909..25258    	 +	449	13540855	-	TVN0024	E	L-2, 4-diaminobutyrate:2-ketoglutarate 4-aminotransferase	
25	 43.08       25269..25781    	 -	170	13540856	-	TVN0025	-	Uncharacterized conserved protein	
26	 39.90       25913..26689    	 -	258	13540857	-	TVN0026	D	Arsenite transporting ATPase	
27	 42.83       26800..27936    	 +	378	13540858	-	TVN0027	D	Cell division GTPase	
28	 41.26       28471..29151    	 +	226	13540859	-	TVN0028	F	Orotidine-5'-phosphate decarboxylase	
29	 41.27       29176..29868    	 +	230	13540860	-	TVN0029	N	Secreted serine protease (ClpP class)	
30	 37.94       29865..30797    	 -	310	13540861	-	TVN0030	H	Cobalamin biosynthesis protein CobD/CbiB	
31	 39.94       30868..32274    	 -	468	13540862	-	TVN0031	H	Cobyric acid synthase	
32	 41.55       32497..34869    	 +	790	13540863	-	TVN0032	J	Valyl-tRNA synthetase	
33	 42.02       35198..36820    	 +	540	13540864	-	TVN0033	F	CTP synthase	
34	 36.67 -1    37710..38039    	 +	109	13540865	-	TVN0034	I	Predicted sterol carrier protein	
35	 43.07       38125..41370    	 +	1081	13540866	-	TVN0035	L	DNA polymerase	
36	 41.34       41375..42148    	 +	257	13540867	-	TVN0036	R	Predicted GTPase	
37	 40.98       42157..42771    	 -	204	13540868	-	TVN0037	S	Uncharacterized conserved protein	
38	 40.86       42761..43039    	 -	92	13540869	-	TVN0038	-	Uncharacterized conserved protein	
39	 36.65 -1    43106..43618    	 +	170	13540870	-	TVN0039	-	Uncharacterized conserved protein	
40	 44.91 +1    43806..44090    	 +	94	13540871	-	TVN0040	S	Uncharacterized ACR	
41	 38.50       44114..44713    	 -	199	13540872	-	TVN0041	R	Predicted regulator of amino acid metabolism	
42	 37.36 -1    44802..45074    	 -	90	13540873	-	TVN0042	-	Uncharacterized conserved protein	
43	 49.71 +2    45165..45689    	 -	174	13540874	-	TVN0043	L	Predicted inactivated transposase	
44	 39.23       46243..46971    	 +	242	13540875	-	TVN0044	R	TPR-repeat-containing protein	
45	 41.46       46979..47335    	 -	118	13540876	-	TVN0045	-	Uncharacterized conserved protein	
46	 41.63       47464..48222    	 +	252	13540877	-	TVN0046	L	Exonuclease III	
47	 44.57 +1    48225..49505    	 -	426	13540878	-	TVN0047	E	Glycine hydroxymethyltransferase	
48	 42.98       49756..49983    	 +	75	13540879	-	TVN0048	C	Archaeal-type H+-ATPase subunit K	
49	 35.48 -1    49989..50546    	 +	185	13540880	-	TVN0049	C	Vacuolar-type H+-ATPase subunit E	
50	 40.06       50548..51618    	 +	356	13540881	-	TVN0050	C	Vacuolar-type H+-ATPase subunit	
51	 40.32       51620..51934    	 +	104	13540882	-	TVN0051	C	Vacuolar-type H+-ATPase subunit F	
52	 44.36 +1    51944..54274    	 +	776	13540883	-	TVN0052	C	Vacuolar-type H+-ATPase, subunit A (contains intein)	
53	 45.84 +1    54255..55637    	 +	460	13540884	-	TVN0053	C	Vacuolar-type H+-ATPase, subunit B	
54	 42.90       55622..56269    	 +	215	13540885	-	TVN0054	C	Vacuolar-type H+-ATPase subunit D	
55	 40.48       56417..56752    	 +	111	13540886	-	TVN0055	C	Archaeal-type H+-ATPase subunit H	
56	 41.46       56755..58686    	 +	643	13540887	-	TVN0056	C	Vacuolar-type H+-ATPase subunit I	
57	 39.83       58751..59350    	 +	199	13540888	-	TVN0057	H	Predicted glutamine amidotransferase	
58	 37.28 -1    59351..60439    	 +	362	13540889	-	TVN0058	E	Aminomethyltransferase (glycine cleavage system T protein)	
59	 38.98       60866..61804    	 -	312	13540890	-	TVN0059	M	UDP-glucose 4-epimerase	
60	 40.69       61978..62181    	 +	67	13540891	-	TVN0060	-	Predicted nucleic-acid-binding protein (Zn-ribbon)	
61	 44.82 +1    62254..62871    	 +	205	13540892	-	TVN0061	P	Superoxide dismutase	
62	 36.42 -1    62879..63493    	 +	204	13540893	-	TVN0062	L	8-oxoguanine DNA glycosylase	
63	 42.31       63671..64561    	 -	296	13540894	-	TVN0063	P	Phosphate permease	
64	 41.98       64561..65125    	 -	188	13540895	-	TVN0064	-	Uncharacterized conserved protein	
65	 43.82       65335..65973    	 +	212	13540896	-	TVN0065	S	Integral membrane protein (MarC family)	
66	 39.39       65980..66474    	 +	164	13540897	-	TVN0066	J	2'-5' RNA ligase	
67	 42.75       66522..67031    	 +	169	13540898	-	TVN0067	-	Predicted membrane protein	
68	 41.30       67028..67504    	 -	158	13540899	-	TVN0068	R	Predicted nucleic-acid-binding protein	
69	 48.17 +2    67506..68678    	 -	390	13540900	-	TVN0069	I	Acetyl-CoA acetyltransferase	
70	 41.67       69015..70322    	 +	435	13540901	-	TVN0070	G	Proline/betaine transport permease	
71	 47.00 +1    70571..71521    	 +	316	13540902	-	TVN0071	E	Threonine synthase	
72	 45.51 +1    71521..72555    	 +	344	13540903	-	TVN0072	S	Uncharacterized conserved protein	
73	 41.68       72606..74006    	 +	466	13540904	-	TVN0073	-	Predicted metal-binding (possibly nucleic-acid-binding) protein containing a PP-loop ATPase domain	
74	 44.31 +1    74056..75057    	 +	333	13540905	-	TVN0074	G	D-mannonate dehydratase	
75	 43.38       75046..75831    	 -	261	13540906	-	TVN0075	Q	Predicted dehydrogenase (short-chain alcohol dehydrogenase family)	
76	 42.83       75867..76361    	 -	164	13540907	-	TVN0076	S	Uncharacterized conserved protein	
77	 43.06       76358..77128    	 -	256	13540908	-	TVN0077	S	Uncharacterized conserved protein	
78	 39.19       77159..78166    	 -	335	13540909	-	TVN0078	E	Histidinol-phosphate aminotransferase	
79	 40.32       78297..79184    	 +	295	13540910	-	TVN0079	S	Uncharacterized conserved protein	
80	 40.00       79186..79590    	 +	134	13540911	-	TVN0080	-	Predicted membrane protein	
81	 42.78       79558..80637    	 -	359	13540912	-	TVN0081	M	Nucleoside-diphosphate-sugar pyrophosphorylase	
82	 38.16       80863..81816    	 -	317	13540913	-	TVN0082	-	Predicted membrane protein	
83	 43.57       81827..83194    	 -	455	13540914	-	TVN0083	C	Cytochrome bd-type quinol oxidase, subunit 1	
84	 42.23       83526..84143    	 +	205	13540915	-	TVN0084	K	Predicted transcription activator	
85	 42.30       84357..84869    	 -	170	13540916	-	TVN0085	-	Predicted membrane protein	
86	 40.92       85061..85666    	 +	201	13540917	-	TVN0086	R	Predicted hydrolase (alpha/beta superfamily)	
87	 40.82       85663..86076    	 +	137	13540918	-	TVN0087	H	Molybdopterin converting factor, large subunit	
88	 44.09       89391..90245    	 -	284	13540919	-	TVN0088	D	ATPase involved in chromosome partitioning	
89	 43.89       90326..91936    	 -	536	13540920	-	TVN0089	F	Formyltetrahydrofolate synthetase	
90	 40.81       91933..92547    	 -	204	13540921	-	TVN0090	E	Formiminotetrahydrofolate cyclodeaminase	
91	 42.02       92631..93539    	 -	302	13540922	-	TVN0091	E	Glutamate formiminotransferase	
92	 42.40       93749..96052    	 +	767	13540923	-	TVN0092	F	Ribonucleotide reductase alpha subunit	
93	 39.53       96070..96843    	 -	257	13540924	-	TVN0093	R	Predicted metal-dependent hydrolase (beta-lactamase superfamily)	
94	 42.10       97142..98920    	 -	592	13540925	-	TVN0094	P	Chloride channel protein	
95	 38.39       99129..100097   	 -	322	13540926	-	TVN0095	M	Glycosyltransferase involved in cell wall biogenesis	
96	 36.93 -1   100132..100770   	 -	212	13540927	-	TVN0096	H	Uncharacterized conserved protein	
97	 42.66      100811..101839   	 -	342	13540928	-	TVN0097	P	Kef-type K+ transport system, predicted NAD-binding component	
98	 41.99      102084..102626   	 +	180	13540929	-	TVN0098	S	Uncharacterized conserved protein	
99	 45.31 +1   102621..103931   	 -	436	13540930	-	TVN0099	C	Dihydrolipoamide dehydrogenase	
100	 43.84      103933..105141   	 -	402	13540931	-	TVN0100	C	Dihydrolipoamide acyltransferase	

 
 40.87 MEAN 
 
 3.44  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.