IslandPath Analysis: Tropheryma whipplei TW08/27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.60   STD DEV: 3.15
Tropheryma whipplei TW08/27, complete genome - 0..925938
783 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 38.83 -2        1..1437     	 +	478	28572176	dnaA	TW001	-	chromosomal replication initiator protein DnaA	
2	 37.74 -2     1767..2900     	 +	377	28572177	dnaN	TW002	-	DNA polymerase III, beta chain	
3	 38.92 -2     2890..3981     	 +	363	28572178	recF	TW003	-	DNA replication and repair protein recF	
4	 39.77 -2     4011..4445     	 +	144	28572179	-	TW004	-	hypothetical protein	
5	 47.59        4485..6434     	 +	649	28572180	gyrB1	TW005	-	DNA gyrase subunit B	
6	 49.27        6438..8897     	 +	819	28572181	gyrA1	TW006	-	DNA gyrase subunit A	
7	 45.14        8894..9274     	 +	126	28572182	-	TW007	-	putative integral membrane protein	
8	 49.21        9640..10332    	 -	230	28572183	-	TW008	-	conserved hypothetical protein	
9	 50.48 +1    10472..11095    	 +	207	28572184	-	TW009	-	putative integral membrane protein	
10	 50.48 +1    11133..11342    	 -	69	28572185	-	TW010	-	putative membrane protein	
11	 50.70 +1    11399..12037    	 +	212	28572186	-	TW011	-	putative glutamine amidotransferase	
12	 49.56       12143..12715    	 +	190	28572187	-	TW012	-	conserved hypothetical membrane protein	
13	 49.32       12752..13627    	 +	291	28572188	-	TW013	-	putative integral membrane heat shock protease	
14	 48.12       13628..13999    	 +	123	28572189	-	TW014	-	putative integral membrane protein	
15	 51.17 +1    14121..15404    	 +	427	28572190	-	TW015	-	WiSP family protein	
16	 48.53       15432..16280    	 +	282	28572191	dkgA	TW016	-	2,5-diketo-D-gluconic acid reductase A	
17	 48.76       16396..18048    	 -	550	28572192	-	TW017	-	putative phosphomannomutase	
18	 50.12 +1    18061..18894    	 -	277	28572193	punA	TW018	-	purine nucleoside phosphorylase	
19	 48.71       18975..20372    	 +	465	28572194	-	TW019	-	putative oxidoreductase	
20	 46.11       20441..22216    	 -	591	28572195	-	TW020	-	putative acyl-CoA carboxylase complex A subunit	
21	 47.86       22333..22752    	 -	139	28572196	-	TW021	-	hypothetical protein	
22	 44.98       22844..23152    	 +	102	28572197	-	TW022	-	hypothetical protein	
23	 45.45       23168..23563    	 +	131	28572198	-	TW023	-	putative integral membrane protein	
24	 44.93       23661..23798    	 +	45	28572199	-	TW024	-	putative integral membrane protein	
25	 46.64       24099..25676    	 -	525	28572200	pccB	TW025	-	propionyl-CoA carboxylase beta chain	
26	 44.18       25738..26484    	 +	248	28572201	-	TW026	-	putative protein ligase	
27	 46.85       26537..26869    	 -	110	28572202	-	TW027	-	putative integral membrane protein	
28	 48.96       26979..28232    	 +	417	28572203	purK	TW028	-	phosphoribosylaminoimidazole carboxylase ATPase subunit PurK	
29	 48.07       28311..28853    	 +	180	28572204	purE	TW029	-	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE	
30	 46.37       29078..29476    	 -	132	28572205	-	TW030	-	putative integral membrane protein	
31	 48.84       29804..30667    	 -	287	28572206	-	TW032	-	putative polysaccharide biosynthesis protein	
32	 45.63       30664..31647    	 -	327	28572207	-	TW033	-	putative dehydratase	
33	 50.16 +1    31892..32515    	 +	207	28572208	-	TW035	-	putative epimerase	
34	 45.05       32571..33449    	 +	292	28572209	-	TW036	-	putative nucleotidyl transferase	
35	 45.11       33457..34305    	 -	282	28572210	-	TW037	-	putative glycosyl transferase	
36	 42.26 -1    34302..35108    	 -	268	28572211	-	TW038	-	putative ABC transport ATP-binding subunit	
37	 43.76       35160..36041    	 -	293	28572212	-	TW039	-	putative ABC transport integral membrane subunit	
38	 45.99       36116..37087    	 +	323	28572213	-	TW040	-	putative glycosyl transferase	
39	 42.02 -1    37195..37551    	 -	118	28572214	-	TW041	-	putative integral membrane protein	
40	 48.42       37548..38276    	 -	242	28572215	-	TW042	-	putative glycosyl transferase	
41	 49.67       38634..40475    	 +	613	28572216	-	TW043	-	putative large integral membrane protein	
42	 50.00 +1    40712..40825    	 +	37	28572217	-	TW044	-	hypothetical protein	
43	 44.44       40845..40934    	 +	29	28572218	-	TW045	-	putative small membrane protein	
44	 47.25       41326..41835    	 +	169	28572219	-	TW046	-	putative integral membrane protein	
45	 48.37       42189..42587    	 +	132	28572220	-	TW048	-	putative secreted protein	
46	 47.12       42584..42982    	 +	132	28572221	-	TW049	-	putative integral membrane protein	
47	 42.31 -1    43109..43420    	 +	103	28572222	-	TW051	-	putative integral membrane protein	
48	 47.45       43784..44215    	 +	143	28572223	-	TW052	-	putative secreted protein	
49	 46.41       44219..44608    	 +	129	28572224	-	TW053	-	putative integral membrane protein	
50	 44.76       44860..46251    	 -	463	28572225	-	TW054	-	putative two component system sensor kinase	
51	 47.66       46318..47001    	 -	227	28572226	-	TW055	-	putative two component system response regulator	
52	 50.53 +1    47266..47643    	 +	125	28572227	-	TW057	-	cold shock protein B	
53	 50.44 +1    47741..47968    	 +	75	28572228	-	TW058	-	hypothetical protein	
54	 44.19       47971..48753    	 +	260	28572229	-	TW059	-	putative sporulation/chromosome partition protein	
55	 46.35       48827..49963    	 +	378	28572230	-	TW060	-	putative oxidoreductase	
56	 48.37       49945..52005    	 +	686	28572231	-	TW061	-	putative GTP-binding protein	
57	 43.82       52002..53279    	 -	425	28572232	-	TW062	-	putative chorismate binding enzyme	
58	 49.31       53375..54094    	 +	239	28572233	-	TW063	-	putative ubiquinone/menaquinone methyltransferase	
59	 48.77       54106..55122    	 +	338	28572234	-	TW064	-	putative polyprenyl diphosphate synthase	
60	 48.14       55141..56484    	 +	447	28572235	-	TW065	-	putative ferredoxin/ferredoxin-NADP reductase	
61	 47.43       56824..57795    	 -	323	28572236	-	TW066	-	putative iron-siderophore binding lipoprotein	
62	 47.19       57921..58916    	 -	331	28572237	-	TW067	-	putative iron-siderophore binding lipoprotein	
63	 42.11 -1    59134..59919    	 -	261	28572238	-	TW068	-	putative iron-siderophore uptake system ATP-binding component	
64	 45.51       59903..60937    	 -	344	28572239	-	TW069	-	putative iron-siderophore uptake system integral membrane component	
65	 47.62       60943..61908    	 -	321	28572240	-	TW070	-	putative iron-siderophore uptake system integral membrane component	
66	 40.82 -1    62354..62647    	 +	97	28572241	-	TW071	-	putative regulator	
67	 45.48       62943..64580    	 -	545	28572242	lysS	TW072	-	lysyl-tRNA synthetase	
68	 46.02       64669..65535    	 +	288	28572243	panC	TW073	-	pantoate--beta-alanine ligase	
69	 43.62       65832..67328    	 +	498	28572244	-	TW074	-	putative phospholipase	
70	 49.46       67380..69902    	 +	840	28572245	-	TW075	-	putative Clp-family ATP-binding protease/regulator	
71	 49.05       70637..72220    	 +	527	28572246	menD	TW078	-	putative menaquinone biosynthesis protein MenD	
72	 44.32       72230..72775    	 +	181	28572247	-	TW079	-	putative secreted protein	
73	 47.26       72796..73707    	 +	303	28572248	menA	TW080	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	
74	 50.46 +1    73945..77412    	 +	1155	28572249	rpoB	TW081	-	DNA-directed RNA polymerase beta chain	
75	 49.01       77472..81299    	 +	1275	28572250	rpoC	TW082	-	DNA-directed RNA polymerase beta' chain	
76	 47.21       81523..82884    	 -	453	28572251	-	TW083	-	putative hydrolase	
77	 52.34 +1    82958..83341    	 +	127	28572252	groS	TW084	-	10 kDa chaperonin	
78	 50.95 +1    83392..84867    	 +	491	28572253	guaB1	TW085	-	inosine-5'-monophosphate dehydrogenase	
79	 50.18 +1    84872..85993    	 +	373	28572254	guaB2	TW086	-	putative inosine-5'-monophosphate dehydrogenase	
80	 47.06       85986..86699    	 +	237	28572255	-	TW087	-	putative membrane protein	
81	 45.66       86765..87202    	 +	145	28572256	-	TW088	-	putative membrane protein	
82	 46.36       87199..88710    	 +	503	28572257	guaA	TW089	-	GMP synthase [glutamine-hydrolyzing]	
83	 44.80       88815..91046    	 +	743	28572258	-	TW090	-	ATP-dependent DNA helicase	
84	 42.76 -1    91313..92797    	 +	494	28572259	-	TW092	-	putative integral membrane protein	
85	 44.76       92799..93437    	 +	212	28572260	purN	TW093	-	phosphoribosylglycinamide formyltransferase	
86	 47.08       93477..95105    	 +	542	28572261	purH	TW094	-	bifunctional purine biosynthesis protein PurH	
87	 42.98 -1    95180..95521    	 -	113	28572262	-	TW095	-	putative integral membrane protein	
88	 42.69 -1    95602..96681    	 +	359	28572263	-	TW096	-	putative integral membrane protein	
89	 44.44       96582..97733    	 -	383	28572264	truB	TW097	-	tRNA pseudouridine synthase B	
90	 43.91       97781..98905    	 +	374	28572265	-	TW098	-	putative metalloprotease	
91	 46.79       98907..100013   	 -	368	28572266	dxr	TW099	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	
92	 45.42      100065..100817   	 +	250	28572267	-	TW100	-	conserved hypothetical protein	
93	 45.42      100840..102411   	 -	523	28572268	-	TW101	-	conserved hypothetical protein (putative ATP-binding)	
94	 46.21      102673..102936   	 +	87	28572269	-	TW103	-	putative membrane protein	
95	 43.10 -1   102921..103964   	 +	347	28572270	-	TW104	-	putative integral membrane protein	
96	 43.80      103993..104355   	 +	120	28572271	-	TW105	-	putative integral membrane protein	
97	 44.86      104352..105071   	 +	239	28572272	-	TW106	-	putative ABC transport ATP-binding subunit	
98	 36.13 -2   105068..105424   	 +	118	28572273	-	TW107	-	putative integral membrane protein	
99	 47.90      107600..108649   	 -	349	28572274	-	TW108	-	putative DNA recombinase	
100	 48.93      110016..110624   	 -	202	28572275	-	TW109	-	putative NUDIX hydrolase	

 
 46.60 MEAN 
 
 3.15  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.