IslandPathversion 1.0

IslandPath Analysis: Thermoplasma acidophilum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.72 STD DEV: 4.01
Thermoplasma acidophilum, complete genome - 0..1564906
1482 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 49.12          -4..223  	 +	75	16082468	ntpK	Ta0001z	C	Archaeal-type H+-ATPase subunit K	
2	 48.39         229..786      	 +	185	16081187	Ta0001	Ta0001	C	ATP synthase (subunit E) related protein	
3	 48.18         788..1858     	 +	356	16081188	Ta0002	Ta0002	C	ATP synthase (subunit C) related protein	
4	 47.30        1859..2173     	 +	104	16081189	Ta0003	Ta0003	C	ATP synthase(subunit F) related protein	
5	 51.29 +1     2183..4477     	 +	764	16081190	Ta0004	Ta0004	C	probable ATP synthase, subunit A (intein containing)	
6	 51.01 +1     4410..5840     	 +	476	16081191	Ta0005	Ta0005	C	probable ATP synthase (subunit B)	
7	 46.88        5825..6466     	 +	213	16081192	Ta0006	Ta0006	C	vacuolar proton-ATPase subunit D related protein	
8	 41.07 -1     6620..6955     	 +	111	16082633	ntpF	Ta0007a	C	Archaeal-type H+-ATPase subunit H	
9	 47.13        6975..8888     	 +	637	16081193	Ta0008	Ta0008	C	A1AO H+ ATPase, subunit I related protein	
10	 46.08        8957..9568     	 +	203	16081194	Ta0009	Ta0009	H	hypothetical protein	
11	 43.15        9573..10652    	 +	359	16082469	gcvT	Ta0010m	E	Aminomethyltransferase (glycine cleavage system T protein)	
12	 46.43       10713..11651    	 -	312	16081195	Ta0011	Ta0011	M	UDP-glucose 4-epimerase related protein	
13	 41.90 -1    11812..12021    	 +	69	16081196	Ta0012	Ta0012	-	hypothetical protein	
14	 45.95       12098..12715    	 +	205	16081197	Ta0013	Ta0013	P	probable Fe-superoxide dismutase (sod)	
15	 42.11 -1    12723..13337    	 +	204	16082470	ogg	Ta0014m	L	8-oxoguanine DNA glycosylase	
16	 46.03       13330..14109    	 -	259	16081198	Ta0015	Ta0015	G	hypothetical membrane protein	
17	 42.50 -1    14252..14818    	 -	188	16081199	Ta0016	Ta0016	Q	hypothetical protein	
18	 48.10       15264..16157    	 -	297	16081200	Ta0017	Ta0017	P	hypothetical membrane protein	
19	 46.38       16157..16723    	 -	188	16081201	Ta0018	Ta0018	-	hypothetical protein	
20	 47.66       16973..17614    	 +	213	16081202	Ta0019	Ta0019	S	hypothetical membrane protein	
21	 43.93       17617..18135    	 +	172	16081203	Ta0020	Ta0020	J	conserved hypothetical protein	
22	 43.12       18173..18448    	 -	91	16082634	-	Ta0020a	-	Uncharacterized conserved protein	
23	 48.05       18613..19611    	 +	332	16082471	hisC	Ta0021m	E	Histidinol-phosphate aminotransferase	
24	 49.42       19686..20456    	 +	256	16081204	Ta0022	Ta0022	S	hypothetical protein	
25	 49.39       20453..20944    	 +	163	16082472	-	Ta0023m	S	Uncharacterized conserved protein	
26	 48.68       20946..22379    	 -	477	16081205	Ta0024	Ta0024	-	hypothetical protein	
27	 50.44       22409..23425    	 -	338	16081206	Ta0025	Ta0025	S	hypothetical protein	
28	 50.05       23443..24393    	 -	316	16081207	Ta0026	Ta0026	E	threonine synthase related protein	
29	 48.89       24534..25388    	 -	284	16081208	Ta0027	Ta0027	R	alcohol dehydrogenase related protein	
30	 35.57 -2    25735..26091    	 +	118	16081209	Ta0028	Ta0028	L	hypothetical protein	
31	 40.40 -1    26048..26896    	 +	282	16081210	Ta0029	Ta0029	L	hypothetical protein	
32	 51.11 +1    26945..28120    	 +	391	16081211	Ta0030	Ta0030	I	probable acetyl CoA synthase	
33	 49.58       28122..28595    	 +	157	16081212	Ta0031	Ta0031	R	conserved hypothetical protein	
34	 47.15       28596..29051    	 -	151	16081213	Ta0032	Ta0032	-	hypothetical protein	
35	 45.17       29357..29956    	 +	199	16081214	Ta0033	Ta0033	R	hypothetical protein	
36	 49.47       29986..30270    	 -	94	16081215	Ta0034	Ta0034	S	conserved hypothetical protein	
37	 46.12       30356..30871    	 -	171	16081216	Ta0035	Ta0035	-	hypothetical protein	
38	 51.75 +1    31002..34259    	 +	1085	16082473	polC	Ta0036m	L	DNA polymerase	
39	 50.51       34261..35040    	 +	259	16081217	Ta0037	Ta0037	R	conserved hypothetical protein	
40	 49.17       35175..35780    	 -	201	16081218	Ta0038	Ta0038	R	72K mitochondrial outer membrane protein related protein	
41	 45.81       35973..36437    	 -	154	16081219	Ta0039	Ta0039	H	hypothetical protein	
42	 49.45       36444..38819    	 -	791	16081220	Ta0040	Ta0040	J	valyl-tRNA synthetase related protein	
43	 48.38       38857..39441    	 +	194	16081221	Ta0041	Ta0041	R	conserved hypothetical protein	
44	 48.38       39438..40055    	 -	205	16081222	Ta0042	Ta0042	S	conserved hypothetical protein	
45	 44.69       40052..40324    	 -	90	16082635	-	Ta0042a	-	Uncharacterized conserved protein	
46	 48.66       40926..42563    	 -	545	16082474	pyrG	Ta0044m	F	CTP synthase	
47	 51.34 +1    42841..44850    	 +	669	16082475	fdhF	Ta0045m	C	Formate dehydrogenase, alpha subunit	
48	 45.60       44847..45767    	 +	306	16081223	Ta0046	Ta0046	C	anaerobic sulfite reduction protein A related protein	
49	 49.66       45805..46539    	 +	244	16081224	Ta0047	Ta0047	H	anaerobic sulfite reduction protein B related protein	
50	 49.55       46709..48139    	 +	476	16081225	Ta0048	Ta0048	G	phosphate permease related protein	
51	 37.63 -2    48715..49413    	 -	232	16081226	Ta0049	Ta0049	-	hypothetical membrane protein	
52	 47.24       49626..50078    	 +	150	16081227	Ta0050	Ta0050	J	ribosomal protein S19 related protein	
53	 43.12       49986..50312    	 -	108	16081228	Ta0051	Ta0051	-	hypothetical protein	
54	 48.00       50229..50603    	 +	124	16081229	Ta0052	Ta0052	R	apoptosis-related Tfar19 related protein	
55	 50.00       50600..50755    	 +	51	16081230	Ta0053	Ta0053	J	probable 50S ribosomal protein L39	
56	 41.58 -1    50757..51035    	 +	92	16081231	Ta0054	Ta0054	J	50S ribosomal protein L31 related proten	
57	 47.77       51082..51732    	 +	216	16082476	TIF6	Ta0055m	J	Translation initiation factor 6 (EIF6)	
58	 47.67       51758..52273    	 -	171	16081232	Ta0056	Ta0056	F	orotate phosphoribosyltransferase	
59	 48.20       52384..54246    	 +	620	16082477	RAD3	Ta0057m	L	Rad3-related DNA helicase	
60	 48.82       54290..54754    	 +	154	16081233	Ta0058	Ta0058	R	N-terminal acetyltransferase complex ard1 subunit related protein	
61	 50.12       54976..56178    	 -	400	16081234	Ta0059	Ta0059	S	conserved hypothetical protein	
62	 51.36 +1    56313..57788    	 +	491	16081235	Ta0060	Ta0060	F	purH bifunctional enzyme related protein	
63	 47.22       57809..58564    	 -	251	16081236	Ta0061	Ta0061	I	probable 3-HYDROXYBUTYRYL-COA DEHYDRATASE	
64	 45.12       58883..59722    	 -	279	16081237	Ta0062	Ta0062	S	conserved hypothetical membrane protein	
65	 46.95       59733..62045    	 -	770	16081238	Ta0063	Ta0063	L	DNA topoisomerase III beta related protein	
66	 44.32       62052..62324    	 -	90	16082478	acyP	Ta0064m	C	Acylphosphatase	
67	 43.76       62457..63962    	 -	501	16082479	-	Ta0065m	R	Predicted permease	
68	 45.21       64078..64860    	 -	260	16081239	Ta0066	Ta0066	Q	gliding motility protein (gldA) related protein	
69	 45.26       65043..66023    	 -	326	16081240	Ta0067	Ta0067	S	conserved hypothetical membrane protein	
70	 49.48       66184..67533    	 +	449	16081241	Ta0068	Ta0068	E	L-2, 4-diaminobutyrate:2-ketoglutarate 4-aminotransferase related protein	
71	 42.12 -1    67536..68138    	 -	200	16081242	Ta0069	Ta0069	-	hypothetical protein	
72	 37.27 -2    68540..69022    	 +	160	16081243	Ta0070	Ta0070	S	conserved hypothetical protein	
73	 34.30 -2    69024..69230    	 +	68	16081244	Ta0071	Ta0071	-	hypothetical protein	
74	 49.65       70585..71718    	 +	377	16081245	Ta0072	Ta0072	D	cell division protein FtsZ	
75	 50.00       71767..72414    	 +	215	16081246	Ta0073	Ta0073	F	orotidine-5'-monophosphate decarboxylase (pyrF)	
76	 45.45       72499..73191    	 +	230	16081247	Ta0074	Ta0074	N	protease (pspA) related protein	
77	 48.05       73220..74626    	 +	468	16081248	Ta0075	Ta0075	H	COBYRIC ACID SYNTHASE related protein	
78	 44.15       74960..75874    	 +	304	16081249	Ta0076	Ta0076	H	COBYRIC ACID SYNTHASE related protein	
79	 46.01       75950..77251    	 +	433	16081250	Ta0077	Ta0077	E	ethanolamine permease related protein	
80	 51.27 +1    77248..78273    	 +	341	16081251	Ta0078	Ta0078	H	conserved hypothetical protein	
81	 47.89       78316..79359    	 -	347	16081252	Ta0079	Ta0079	H	dihydropteroate synthase related protein	
82	 48.23       79463..80617    	 -	384	16081253	Ta0080	Ta0080	E	cystathionine gamma-lyase related protein	
83	 43.99       80728..81309    	 +	193	16081254	Ta0081	Ta0081	F	conserved hypothetical protein	
84	 46.41       81342..81953    	 +	203	16081255	Ta0082	Ta0082	F	probable phosphoribosylglycinamide formyltransferase	
85	 46.67       82159..82368    	 -	69	16081256	Ta0083	Ta0083	S	conserved hypothetical protein	
86	 42.68 -1    82426..83142    	 -	238	16081257	Ta0084	Ta0084	T	hypothetical protein	
87	 46.87       83173..84369    	 -	398	16082480	dgoA-2	Ta0085m	H	Galactonate dehydratase	
88	 46.79       84693..85316    	 -	207	16081258	Ta0086	Ta0086	R	conserved hypothetical protein	
89	 45.33       85509..86333    	 +	274	16081259	Ta0087	Ta0087	R	conserved hypothetical membrane protein	
90	 45.67       86337..87258    	 +	307	16082481	-	Ta0088m	Q	ABC-type multidrug transport system, ATPase component	
91	 45.72       87252..88268    	 -	338	16081260	Ta0090	Ta0090	F	probable phosphoribosyl-aminoimidazole synthetase	
92	 44.99       88440..88868    	 +	142	16081261	Ta0091	Ta0091	J	probable ribosomal protein S12	
93	 45.41       88875..89429    	 +	184	16081262	Ta0092	Ta0092	J	probable 30S RIBOSOMAL PROTEIN S7	
94	 47.99       89546..89818    	 -	90	16081263	Ta0093	Ta0093	L	DNA-binding protein HTa	
95	 46.03       90163..90666    	 +	167	16081264	Ta0094	Ta0094	-	conserved hypothetical membrane protein	
96	 40.55 -1    90663..90953    	 -	96	16081265	Ta0095	Ta0095	S	conserved hypothetical protein	
97	 45.03       90954..91979    	 -	341	16081266	Ta0096	Ta0096	L	hypothetical protein	
98	 47.59       92193..93497    	 +	434	16082482	dnaG	Ta0097m	L	DNA primase	
99	 50.27       93479..94960    	 +	493	16081267	Ta0098	Ta0098	O	conserved hypothetical protein	
100	 50.04       95054..96334    	 +	426	16081268	Ta0099	Ta0099	J	probable histidyl-tRNA synthetase	

 
 46.72 MEAN 
 
 4.01  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.