IslandPath Analysis: Synechocystis sp PCC6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 0..3573470
3167 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 50.62         -199..772  	 +	323	16329171	sds	slr0611	H	solanesyl diphosphate synthase	
2	 53.23 +1      937..1494     	 +	185	16329172	-	slr0612	J	hypothetical protein	
3	 50.77        1577..2098     	 +	173	16329173	-	slr0613	-	unknown protein	
4	 49.72        2172..2873     	 -	233	16329174	-	sll0558	-	hypothetical protein	
5	 47.08        3192..4268     	 -	358	16329175	-	sll1214	-	PNIL34 or AT103 phytochrome-regulated gene homologue	
6	 49.41        4451..5389     	 -	312	16329176	-	sll1213	M	hypothetical protein	
7	 49.59        5534..6622     	 -	362	16329177	rfbD	sll1212	M	GDP-D-mannose dehydratase	
8	 51.43        7229..8311     	 +	360	16329178	psbA2	slr1311	-	photosystem II D1 protein	
9	 46.52        8492..10471    	 +	659	16329179	speA	slr1312	E	arginine decarboxylase	
10	 49.15       10622..12631    	 -	669	16329180	lig	sll1209	L	DNA ligase	
11	 44.66       12755..13363    	 +	202	16329181	-	slr1315	-	unknown protein	
12	 52.03       13498..14529    	 +	343	16329182	fecC	slr1316	P	iron(III) dicitrate transport system permease protein; FecC	
13	 53.71 +1    14626..15675    	 +	349	16329183	fecD	slr1317	P	iron(III) dicitrate transport system permease protein; FecD	
14	 52.42       15937..16743    	 +	268	16329184	fecE	slr1318	P	iron(III) dicitrate transport system permease protein; FecE	
15	 48.21       16740..17687    	 +	315	16329185	fecB	slr1319	P	iron(III) dicitrate transport system permease protein; FecB	
16	 51.64       17853..20408    	 -	851	16329186	iutA	sll1206	P	ferric aerobactin receptor	
17	 49.44       20615..21595    	 -	326	16329187	pchR	sll1205	K	regulatory protein; PchR	
18	 38.40 -1    21838..23121    	 -	427	16329188	-	sll1204	G	hypothetical protein	
19	 35.09 -2    23139..24104    	 -	321	16329189	-	sll1203	-	unknown protein	
20	 31.61 -2    24101..25144    	 -	347	16329190	-	sll1202	P	unknown protein	
21	 39.35 -1    25266..27857    	 -	863	16329191	fhuA	sll1409	P	ferrichrome-iron receptor	
22	 33.62 -2    27990..29030    	 -	346	16329192	pcrR	sll1408	K	regulatory protein; PcrR	
23	 36.72 -2    29098..29895    	 -	265	16329193	-	sll1407	Q	unknown protein	
24	 44.95       29968..32454    	 -	828	16329194	fhuA	sll1406	P	ferrichrome-iron receptor	
25	 45.45       32524..32952    	 -	142	16329195	-	sll1405	N	biopolymer transport ExbD protein homologue	
26	 52.45       32912..33544    	 -	210	16329196	exbB	sll1404	N	biopolymer transport ExbB protein	
27	 56.29 +1    33891..35489    	 +	532	16329197	-	slr1484	-	unknown protein	
28	 46.57       35566..36615    	 +	349	16329198	-	slr1485	-	hypothetical protein	
29	 50.83       36721..38538    	 +	605	16329199	-	slr1488	Q	ABC transporter	
30	 43.10 -1    38644..39636    	 +	330	16329200	pchR	slr1489	K	regulatory protein; PchR	
31	 46.45       39802..42363    	 +	853	16329201	fhuA	slr1490	P	ferrichrome-iron receptor	
32	 50.25       42405..43397    	 +	330	16329202	fecB	slr1491	P	iron(III) dicitrate-binding periplasmic protein	
33	 49.36       43571..44506    	 +	311	16329203	fecB	slr1492	P	iron(III) dicitrate-binding periplasmic protein	
34	 46.62       44442..44885    	 +	147	16329204	-	slr1493	-	unknown protein	
35	 48.70       44948..46789    	 +	613	16329205	-	slr1494	Q	ABC transporter	
36	 34.22 -2    47007..48017    	 -	336	16329206	-	sll1401	-	unknown protein	
37	 37.13 -2    48067..48408    	 -	113	16329207	-	sll1400	-	unknown protein	
38	 41.13 -1    48405..48635    	 -	76	16329208	-	ssl2733	S	unknown protein	
39	 50.41       48663..49868    	 -	401	16329209	-	sll1399	-	hypothetical protein	
40	 46.90       49893..50231    	 -	112	16329210	psb13	sll1398	-	photosystem II 13 kD protein	
41	 50.85       50246..51895    	 +	549	16329211	-	slr1495	-	unknown protein	
42	 36.75 -2    52260..53108    	 -	282	16329212	-	sll1397	L	transposase	
43	 41.93 -1    53453..54127    	 -	224	16329213	-	sll1396	-	unknown protein	
44	 52.27       54533..55657    	 +	374	16329214	hypD	slr1498	O	hydrogenase isoenzymes formation protein; HypD	
45	 52.55       55669..56511    	 -	280	16329215	rfbD	sll1395	M	dTDP-6-deoxy-L-mannose-dehydrogenase	
46	 49.78       56556..57224    	 -	222	16329216	msrA	sll1394	O	peptide methionine sulfoxide reductase	
47	 48.78       57340..58815    	 -	491	16329217	glgA	sll1393	G	glycogen (starch) synthase	
48	 51.47       59039..59650    	 -	203	16329218	-	sll1392	K	hypothetical protein	
49	 48.97       59746..60423    	 +	225	16329219	-	slr1501	K	unknown protein	
50	 50.75       60524..61522    	 +	332	16329220	-	slr1113	Q	ABC transporter	
51	 51.59       61834..63591    	 +	585	16329221	-	slr1114	-	unknown protein	
52	 49.61       63588..64361    	 +	257	16329222	-	slr1115	Q	unknown protein	
53	 42.53 -1    64393..64914    	 +	173	16329223	-	slr1116	S	unknown protein	
54	 44.75       64987..65748    	 +	253	16329224	-	slr1117	Q	unknown protein	
55	 48.21       65827..67533    	 -	568	16329225	-	sll1064	-	unknown protein	
56	 44.44       67606..68361    	 +	251	16329226	rffM	slr1118	M	UDP-N-acetyl-D-mannosaminuronic acid transferase	
57	 51.82       68400..69059    	 -	219	16329227	-	sll1063	O	unknown protein	
58	 52.42       69284..69985    	 +	233	16329228	-	slr1119	E	unknown protein	
59	 36.24 -2    70016..70393    	 -	125	16329229	-	sll1062	-	unknown protein	
60	 34.11 -2    70420..70935    	 -	171	16329230	-	sll1061	-	unknown protein	
61	 47.24       70944..74042    	 -	1032	16329231	-	sll1060	S	unknown protein	
62	 45.24       73978..74229    	 -	83	16329232	-	ssl2069	-	unknown protein	
63	 46.88       74498..74785    	 +	95	16329233	-	ssr1853	-	unknown protein	
64	 52.10       74995..75804    	 +	269	16329234	hofD	slr1120	N	type 4 prepilin peptidase	
65	 49.82       75955..76500    	 -	181	16329235	adk	sll1059	F	adenylate kinase	
66	 50.85       76580..77407    	 -	275	16329236	dapB	sll1058	E	dihydrodipicolinate reductase	
67	 48.03       77494..77874    	 -	126	16329237	trx	sll1057	O	thioredoxin M	
68	 52.96       78467..80800    	 -	777	16329238	purL	sll1056	F	phosphoribosylformyl glycinamidine synthetase II	
69	 47.81       80938..81690    	 +	250	16329239	-	slr1122	-	unknown protein	
70	 51.77       81696..82259    	 -	187	16329240	-	sll1054	L	hypothetical protein	
71	 54.19 +1    82291..83853    	 -	520	16329241	-	sll1053	Q	hypothetical protein	
72	 51.56       84122..84697    	 +	191	16329242	gmk	slr1123	F	guanylate kinase	
73	 51.90       85058..86107    	 +	349	16329243	gpmB	slr1124	G	phosphoglycerate mutase	
74	 48.81       86159..87418    	 +	419	16329244	crtX	slr1125	G	zeaxanthin glucosyl transferase	
75	 48.00       87536..87910    	 -	124	16329245	-	sll1052	R	unknown protein	
76	 56.74 +1    88017..88661    	 -	214	16329246	cpcF	sll1051	-	phycocyanin alpha phycocyanobilin lyase; CpcF	
77	 52.51       88818..90512    	 -	564	16329247	-	sll1049	E	unknown protein	
78	 52.27       90620..91411    	 +	263	16329248	-	slr1127	-	unknown protein	
79	 47.52       91517..92482    	 +	321	16329249	-	slr1128	O	erthyrocyte band 7 integral membrane protein, protein 7.2B, stomatin	
80	 50.81       93128..95152    	 +	674	16329250	rne	slr1129	J	ribonuclease E	
81	 52.53       95236..95808    	 +	190	16329251	rhnB	slr1130	L	ribonuclease HII	
82	 51.58       95818..96228    	 -	136	16329252	mutT	sll1045	L	mutator MutT protein	
83	 53.96 +1    96325..98481    	 -	718	16329253	pnp	sll1043	J	polyribonucleotide nucleotidyltransferase	
84	 52.79       98609..99199    	 -	196	16329254	lepB	sll0716	N	leader peptidase I	
85	 53.16       99402..100793   	 +	463	16329255	me	slr0721	C	malic enzyme	
86	 52.76      100794..101771   	 -	325	16329256	cysM	sll0712	E	cysteine synthase	
87	 54.85 +1   101884..102831   	 -	315	16329257	-	sll0711	I	hypothetical protein	
88	 30.08 -2   102930..105110   	 -	726	16329258	-	sll0710	-	unknown protein	
89	 30.38 -2   105151..106539   	 -	462	16329259	llaI.2	sll0709	L	2nd component required for LlaI restriction activity	
90	 47.95      107471..108325   	 -	284	16329260	ksgA	sll0708	J	dimethyladenosine transferase	
91	 51.43      108290..109201   	 +	303	16329261	-	slr0722	S	hypothetical protein	
92	 50.00      109222..110313   	 +	363	16329262	-	slr0723	-	unknown protein	
93	 47.45      110392..110724   	 +	110	16329263	sohA	slr0724	-	HtaR suppressor protein	
94	 40.29 -1   110808..111224   	 +	138	16329264	-	slr0725	-	hypothetical protein	
95	 31.59 -2   111585..112559   	 +	324	16329265	-	slr0727	-	unknown protein	
96	 51.55      113025..114188   	 +	387	16329266	-	slr0728	M	unknown protein	
97	 50.33      114319..114624   	 +	101	16329267	-	slr0729	-	unknown protein	
98	 49.87      114874..115272   	 +	132	16329268	-	slr0730	-	unknown protein	
99	 52.94      115269..116477   	 +	402	16329269	-	slr0731	-	unknown protein	
100	 54.51 +1   116518..117693   	 -	391	16329270	nifS	sll0704	E	NifS protein	

 
 48.22 MEAN 
 
 4.98  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.