IslandPathversion 1.0

IslandPath Analysis: sulfolobus tokodaii



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.40 STD DEV: 4.39
Sulfolobus tokodaii complete genome - 0..2694765
2826 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.68         526..1632     	 -	368	15920164	-	ST0001	-	368aa long hypothetical protein	
2	 36.08        1883..2173     	 -	96	15920165	-	STS001	-	96aa long conserved hypothetical protein	
3	 34.19        2263..2496     	 +	77	15920166	-	STS002	-	77aa long conserved hypothetical protein	
4	 32.96        2268..2537     	 -	89	15920167	-	STS003	-	89aa long conserved hypothetical protein	
5	 35.19        2722..2937     	 -	71	15920168	-	STS004	-	71aa long conserved hypothetical protein	
6	 36.05        3144..3401     	 +	85	15920169	-	STS005	-	85aa long hypothetical protein	
7	 37.25        3247..3399     	 -	50	15920170	-	STS006	-	50aa long conserved hypothetical protein	
8	 38.33 +1     3744..5483     	 +	579	15920171	-	ST0002	E	579aa long hypothetical prolyl endopeptidase	
9	 38.67 +1     5970..8819     	 -	949	15920172	-	ST0003	R	949aa long hypothetical protein	
10	 35.12        9382..9549     	 +	55	15920173	-	STS007	-	55aa long hypothetical cytochrome b	
11	 31.07        9819..10127    	 -	102	15920174	-	ST0004	-	102aa long conserved hypothetical protein	
12	 36.28       10108..10650    	 -	180	15920175	-	ST0005	-	180aa long hypothetical protein	
13	 36.12       10825..11469    	 -	214	15920176	-	ST0006	-	214aa long hypothetical protein	
14	 31.76       12210..12716    	 +	168	15920177	-	ST0007	-	168aa long hypothetical protein	
15	 35.12       12718..13446    	 +	242	15920178	-	ST0008	S	242aa long hypothetical protein	
16	 37.50       13440..14279    	 +	279	15920179	-	ST0009	S	279aa long hypothetical protein	
17	 35.37       14027..14419    	 -	130	15920180	-	ST0010	-	130aa long hypothetical protein	
18	 37.74       14251..15045    	 +	264	15920181	-	ST0011	-	264aa long hypothetical protein	
19	 35.32       15202..17868    	 +	888	15920182	-	ST0012	R	888aa long hypothetical protein	
20	 35.46       17868..18479    	 +	203	15920183	-	ST0013	-	203aa long hypothetical protein	
21	 35.76       18472..19419    	 +	315	15920184	-	ST0014	-	315aa long hypothetical protein	
22	 38.07 +1    19416..20111    	 +	231	15920185	-	ST0015	-	231aa long hypothetical protein	
23	 34.51       20860..21369    	 +	169	15920186	-	ST0016	-	169aa long hypothetical protein	
24	 34.62       21509..21742    	 +	77	15920187	-	STS008	K	77aa long conserved hypothetical protein	
25	 34.62       21769..22158    	 +	129	15920188	-	ST0017	-	129aa long hypothetical protein	
26	 35.66       21861..22247    	 -	128	15920189	-	ST0018	-	128aa long hypothetical protein	
27	 35.57       22408..23790    	 +	460	15920190	-	ST0019	R	460aa long hypothetical protein	
28	 39.04 +1    24046..25131    	 -	361	15920191	-	ST0020	-	361aa long conserved hypothetical protein	
29	 38.27 +1    27369..27692    	 +	107	15920192	-	ST0021	-	107aa long hypothetical protein	
30	 37.37       29207..29404    	 -	65	15920193	-	STS009	-	65aa long conserved hypothetical protein	
31	 39.64 +1    31149..31703    	 +	184	15920194	-	ST0022	L	184aa long hypothetical protein	
32	 36.97       31700..32386    	 -	228	15920195	-	ST0023	-	228aa long conserved hypothetical protein	
33	 34.94       35879..36190    	 -	103	15920196	-	ST0024	-	103aa long hypothetical protein	
34	 33.91       37869..38042    	 -	57	15920197	-	STS010	-	57aa long hypothetical protein	
35	 39.05 +1    39953..40267    	 -	104	15920198	-	ST0025	-	104aa long conserved hypothetical protein	
36	 39.46 +1    40239..41135    	 -	298	15920199	-	ST0026	S	298aa long conserved hypothetical protein	
37	 39.33 +1    41179..42045    	 +	288	15920200	-	ST0027	-	288aa long conserved hypothetical protein	
38	 35.42       42077..42556    	 +	159	15920201	-	ST0028	-	159aa long conserved hypothetical protein	
39	 37.51       42549..43505    	 +	318	15920202	-	ST0029	S	318aa long conserved hypothetical protein	
40	 38.31 +1    43502..44284    	 +	260	15920203	-	ST0030	-	260aa long conserved hypothetical protein	
41	 33.63       44272..45282    	 +	336	15920204	-	ST0031	-	336aa long hypothetical protein	
42	 33.33       45312..46946    	 +	544	15920205	-	ST0032	R	544aa long conserved hypothetical protein	
43	 32.39       46943..47581    	 +	212	15920206	-	ST0033	L	212aa long hypothetical protein	
44	 36.59       47578..48345    	 +	255	15920207	-	ST0034	-	255aa long hypothetical protein	
45	 34.26       49463..50755    	 +	430	15920208	-	ST0035	-	430aa long hypothetical protein	
46	 32.82       51475..51861    	 -	128	15920209	-	ST0036	-	128aa long conserved hypothetical protein	
47	 34.90       51854..52108    	 -	84	15920210	-	STS011	K	84aa long conserved hypothetical protein	
48	 34.60       52272..52745    	 +	157	15920211	-	ST0037	R	157aa long conserved hypothetical protein	
49	 39.19 +1    52708..52980    	 -	90	15920212	-	STS012	-	90aa long hypothetical protein	
50	 36.72       53500..53676    	 +	58	15920213	-	STS013	S	58aa long conserved hypothetical protein	
51	 30.50       53904..54185    	 +	93	15920214	-	STS014	R	93aa long conserved hypothetical protein	
52	 39.07 +1    56081..57004    	 -	307	15920215	-	ST0038	R	307aa long hypothetical alcohol dehydrogenase	
53	 33.94       56943..57107    	 -	54	15920216	-	STS015	R	54aa long hypothetical alcohol dehydrogenase	
54	 33.99       57094..57552    	 -	152	15920217	-	ST0040	R	152aa long hypothetical protein	
55	 44.25 +2    57914..58957    	 -	347	15920218	-	ST0041	L	347aa long conserved hypothetical protein	
56	 42.20 +2    58899..59225    	 -	108	15920219	-	ST0042	L	108aa long conserved hypothetical protein	
57	 42.82 +2    59212..59622    	 -	136	15920220	-	ST0043	L	136aa long hypothetical transposase	
58	 38.38 +1    59664..60377    	 -	237	15920221	-	ST0044	-	237aa long hypothetical protein	
59	 33.33       61168..61812    	 -	214	15920222	-	ST0045	C	214aa long hypothetical dehydrogenase	
60	 39.61 +1    61878..62864    	 -	328	15920223	-	ST0046	L	328aa long hypothetical protein	
61	 34.34       62961..64643    	 -	560	15920224	-	ST0047	C	560aa long hypothetical dehydrogenase	
62	 34.90       64646..65410    	 -	254	15920225	-	ST0048	I	254aa long hypothetical enoyl-CoA hydratase	
63	 32.22       65055..65414    	 +	119	15920226	-	ST0049	-	119aa long hypothetical protein	
64	 35.23       65478..67166    	 -	562	15920227	-	ST0050	I	562aa long hypothetical acetyl-CoA synthetase	
65	 27.92 -1    67643..68326    	 +	227	15920228	-	ST0051	R	227aa long conserved hypothetical protein	
66	 36.88       68421..69857    	 -	478	15920229	-	ST0052	H	478aa long conserved hypothetical protein	
67	 34.40       69875..70909    	 -	344	15920230	-	ST0053	R	344aa long hypothetical alcohol dehydrogenase	
68	 36.79       70906..72234    	 -	442	15920231	-	ST0054	G	442aa long hypothetical transporter	
69	 27.22 -1    72942..73121    	 -	59	15920232	-	STS016	-	59aa long hypothetical NADH-ubiquinone oxidoreductase subunit 4L	
70	 40.84 +1    73168..74220    	 +	350	15920233	-	ST0055	-	350aa long hypothetical protein	
71	 26.67 -1    74316..74540    	 +	74	15920234	-	STS017	-	74aa long conserved hypothetical protein	
72	 33.65       75466..77064    	 -	532	15920235	-	ST0056	C	532aa long hypothetical magnesium-protoporphyrin ix monomethyl ester oxidative cyclase 66 kd subunit	
73	 31.40       77331..78260    	 +	309	15920236	-	ST0057	R	309aa long conserved hypothetical protein	
74	 29.08       78556..79119    	 -	187	15920237	-	ST0058	-	187aa long hypothetical protein	
75	 39.74 +1    79079..80467    	 -	462	15920238	-	ST0059	-	462aa long hypothetical selenium-binding protein	
76	 39.37 +1    79708..80022    	 +	104	15920239	-	ST0060	-	104aa long hypothetical protein	
77	 34.53       80975..81391    	 +	138	15920240	-	ST0061	Q	138aa long conserved hypothetical protein	
78	 35.68       81399..82931    	 -	510	15920241	-	ST0062	I	510aa long hypothetical fatty-acid--CoA ligase	
79	 35.24       82984..84396    	 -	470	15920242	-	ST0063	Q	470aa long conserved hypothetical protein	
80	 38.17 +1    84663..86069    	 +	468	15920243	-	ST0064	C	468aa long hypothetical aldehyde dehydrogenase	
81	 37.77       86414..87811    	 -	465	15920244	-	ST0065	G	465aa long hypothetical transporter	
82	 34.27       88099..89268    	 +	389	15920245	-	ST0066	I	389aa long hypothetical acyl-CoA dehydrogenase	
83	 33.87       89412..90530    	 -	372	15920246	-	ST0067	C	372aa long hypothetical alpha-methylacyl-CoA racemase	
84	 36.55       90543..91040    	 -	165	15920247	-	ST0068	I	165aa long conserved hypothetical protein	
85	 35.58       91339..93297    	 +	652	15920248	-	ST0069	I	652aa long hypothetical 3-hydroxybutyryl-CoA dehydrogenase	
86	 35.56       93329..94090    	 +	253	15920249	-	ST0070	Q	253aa long hypothetical 3-oxoacyl-[acyl-carrier protein] reductase	
87	 34.10       94092..95003    	 -	303	15920250	-	ST0071	I	303aa long hypothetical esterase	
88	 31.79       95192..95776    	 +	194	15920251	-	ST0072	K	194aa long conserved hypothetical protein	
89	 38.74 +1    96111..96683    	 -	190	15920252	-	ST0073	-	190aa long hypothetical protein	
90	 29.55       97074..97469    	 +	131	15920253	-	ST0074	-	131aa long hypothetical protein	
91	 34.72       97632..98567    	 +	311	15920254	-	ST0075	C	311aa long hypothetical NAD-dependent alcohol dehydrogenase	
92	 39.40 +1    98607..99809    	 +	400	15920255	-	ST0076	I	400aa long hypothetical acyl-CoA dehydrogenase	
93	 35.38       99862..101472   	 +	536	15920256	-	ST0077	I	536aa long hypothetical fatty-acid--CoA ligase	
94	 34.31      101106..101513   	 -	135	15920257	-	ST0078	-	135aa long hypothetical protein	
95	 40.03 +1   101475..102668   	 +	397	15920258	-	ST0079	I	397aa long hypothetical nonspecific lipid-transfer protein	
96	 31.83      102665..103195   	 +	176	15920259	-	ST0080	R	176aa long conserved hypothetical protein	
97	 35.69      103564..106485   	 +	973	15920260	-	ST0081	R	973aa long hypothetical formate dehydrogenase alpha subunit	
98	 32.49      106449..106805   	 +	118	15920261	-	ST0083	-	118aa long conserved hypothetical protein	
99	 35.16      106786..107553   	 +	255	15920262	-	ST0084	C	255aa long hypothetical formate dehydrogenase subunit fdhD	
100	 31.84      107596..108396   	 +	266	15920263	-	ST0085	I	266aa long conserved hypothetical protein	

 
 33.40 MEAN 
 
 4.39  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.