IslandPath Analysis: Sulfolobus solfataricus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.39   STD DEV: 4.50
Sulfolobus solfataricus, complete genome - 0..2992245
2977 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 34.86         -797..252  	 +	349	15896972	-	SSO12256	M	Glycosyltransferase, putative	
2	 33.50         249..857      	 +	202	15896973	-	SSO0001	-	Hypothetical protein	
3	 35.00         889..2091     	 +	400	15896974	thiD-1	SSO0002	H	Phosphomethylpyrimidine kinase (thiD-1)	
4	 35.71        2088..2969     	 +	293	15896975	rbsK-1	SSO0004	G	Ribokinase (rbsK-1)	
5	 32.75        3057..3743     	 +	228	15896976	-	SSO0006	R	Conserved hypothetical protein	
6	 32.23        3736..4458     	 +	240	15896977	-	SSO0007	R	Conserved hypothetical protein	
7	 34.51        4500..5348     	 +	282	15896978	-	SSO0008	L	Transposase, probably IS605-TnpB family	
8	 35.57        5351..6334     	 -	327	15896979	-	SSO0009	T	Deacetylase, putative	
9	 34.66        6376..7431     	 +	351	15896980	-	SSO0010	E	X-pro aminopeptidase	
10	 37.74        7555..10479    	 +	974	15896981	-	SSO0011	-	Conserved hypothetical protein	
11	 25.00 -2    10496..10651    	 +	51	15896982	-	SSO5023	-	Hypothetical protein	
12	 32.36       11143..11760    	 +	205	15896983	-	SSO0012	S	Conserved hypothetical protein	
13	 33.89       11767..11946    	 -	59	15896984	-	SSO5027	-	Hypothetical protein	
14	 30.61 -1    12050..12673    	 +	207	15896985	-	SSO0013	-	Hypothetical protein	
15	 29.43 -1    12647..13030    	 -	127	15896986	-	SSO0014	-	Conserved hypothetical protein	
16	 37.98       13020..13880    	 -	286	15896987	-	SSO0015	R	Conserved hypothetical protein	
17	 36.92       13920..15314    	 -	464	15896988	-	SSO0016	M	Transcription regulator (exsB) related protein	
18	 35.45       15589..17808    	 +	739	15896989	-	SSO0017	R	ATP-dependent helicase	
19	 30.81 -1    17801..19660    	 +	619	15896990	-	SSO0018	-	Hypothetical protein	
20	 34.24       19647..20195    	 -	182	15896991	moaB	SSO0019	H	Molybdenum cofactor biosynthesis protein B (moaB)	
21	 31.36 -1    20199..21008    	 -	269	15896992	-	SSO0020	-	Hypothetical protein	
22	 35.87       21513..22064    	 +	183	15896993	soxB-like	SSO0021	E	Oxidoreductase, soxB-like, putative (soxB-like)	
23	 33.33       22052..22492    	 -	146	15896994	-	SSO0022	-	Hypothetical protein	
24	 29.61 -1    22598..23215    	 +	205	15896995	-	SSO0023	-	Conserved hypothetical protein	
25	 35.49       23195..23842    	 -	215	15896996	-	SSO0024	-	Conserved hypothetical protein	
26	 33.50       23895..24512    	 +	205	15896997	-	SSO0025	-	Hypothetical protein	
27	 37.89       24484..25713    	 +	409	15896998	purT	SSO0026	F	Phosphoribosylglycinamide formyltransferase 2 (purT)	
28	 37.88       25702..26757    	 -	351	15896999	-	SSO0028	T	Acetylpolyamine aminohydrolase	
29	 35.17       26805..27947    	 +	380	15897000	-	SSO0029	R	Conserved hypothetical protein	
30	 35.01       27944..28660    	 +	238	15897001	-	SSO0031	R	Conserved hypothetical protein	
31	 30.48 -1    28655..29461    	 -	268	15897002	-	SSO0032	-	Hypothetical protein	
32	 32.33       29591..30088    	 -	165	15897003	-	SSO0033	-	Hypothetical protein	
33	 35.60       30202..30864    	 +	220	15897004	soj	SSO0034	D	SOJ protein (soj)	
34	 31.52 -1    30861..31190    	 +	109	15897005	-	SSO0035	-	Conserved hypothetical protein	
35	 23.93 -2    31267..31734    	 +	155	15897006	-	SSO0036	-	Hypothetical protein	
36	 33.97       32275..34002    	 +	575	15897007	-	SSO0037	-	Hypothetical protein	
37	 30.87 -1    34256..34702    	 +	148	15897008	-	SSO0038	K	Conserved hypothetical protein	
38	 33.51       34685..35257    	 -	190	15897009	-	SSO0039	S	Conserved hypothetical protein	
39	 44.23 +1    35370..35828    	 +	152	15897010	-	SSO0040	L	First ORF in transposon ISC1078	
40	 45.29 +1    35789..36382    	 +	197	15897011	-	SSO0041	L	Second ORF in transposon ISC1078	
41	 58.26 +2    36667..37320    	 -	217	15897012	-	SSO0042	-	Second ORF in transposon ISC1234	
42	 48.95 +2    37479..37811    	 -	110	15897013	-	SSO0043	-	First ORF in transposon ISC1234	
43	 37.04       38481..40262    	 +	593	15897014	doxB	SSO0044	C	Heme bearing subunit I of the terminal oxidase (doxB)	
44	 38.39       40264..41331    	 +	355	15897015	doxC	SSO0045	-	Terminal oxidase, subunit (doxC)	
45	 34.83       41328..41528    	 +	66	15897016	doxE	SSO5098	-	Terminal oxidase, small hydrophobic subunit (doxE)	
46	 31.32 -1    41790..42533    	 -	247	15897017	-	SSO0046	L	Conserved hypothetical protein	
47	 38.72       42978..43367    	 +	129	15897018	-	SSO0048	K	Transcriptional regulator, putative	
48	 37.63       43434..43829    	 +	131	15897019	-	SSO0049	K	Conserved hypothetical protein	
49	 32.80       43863..44612    	 +	249	15897020	paaF-1	SSO0050	I	Enoyl CoA hydratase (paaF-1)	
50	 32.64       44609..45619    	 -	336	15897021	-	SSO0051	R	Conserved hypothetical protein	
51	 34.68       45603..46343    	 -	246	15897022	-	SSO0053	Q	ABC transporter, ATP binding protein	
52	 35.95       46297..47328    	 +	343	15897023	hypE	SSO0052	O	Hydrogenase expression/formation protein (hypE)	
53	 33.52       47249..47788    	 +	179	15897024	-	SSO0054	H	Conserved hypothetical protein	
54	 31.01 -1    47785..48516    	 +	243	15897025	-	SSO0055	-	Hypothetical protein	
55	 31.10 -1    48833..49279    	 +	148	15897026	-	SSO0057	-	Hypothetical protein	
56	 35.29       50238..51206    	 -	322	15897027	gnptA	SSO0060	M	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (gnptA)	
57	 34.83       51207..52205    	 -	332	15897028	gdS-1	SSO0061	H	Geranylgeranyl pyrophosphate synthetase  (gdS-1)	
58	 38.48       52207..53313    	 -	368	15897029	-	SSO0063	C	FMN-dependent dehydrogenase, conserved hypothetical	
59	 35.54       53306..54031    	 -	241	15897030	-	SSO0064	R	Conserved hypothetical protein	
60	 34.85       53977..54699    	 -	240	15897031	-	SSO0065	-	Hypothetical protein	
61	 34.74       54626..55480    	 -	284	15897032	-	SSO0066	R	Conserved hypothetical protein	
62	 37.64       55477..56172    	 -	231	15897033	rps2AB	SSO0067	J	SSU ribosomal protein S2AB (rps2AB)	
63	 33.33       56169..56369    	 -	66	15897034	rpoN	SSO5140	K	DNA-directed RNA polymerase, subunit N (rpoN)	
64	 38.30       56376..56798    	 -	140	15897035	rps9AB	SSO0068	J	SSU ribosomal protein S9AB (rps9AB)	
65	 37.11       56786..57235    	 -	149	15897036	rpl13AB	SSO0069	J	LSU ribosomal protein L13AB (rpl13AB)	
66	 34.17       57232..57591    	 -	119	15897037	rpl18E	SSO0070	J	LSU ribosomal protein L18E (rpl18E)	
67	 35.71       57588..58385    	 -	265	15897038	rpoD	SSO0071	K	DNA-directed RNA polymerase, subunit D (rpoD)	
68	 44.86 +1    58397..58795    	 -	132	15897039	rps11AB	SSO0072	J	SSU ribosomal protein S11AB (rps11AB)	
69	 37.36       58779..59324    	 -	181	15897040	rps4AB	SSO0073	J	SSU ribosomal protein S4AB (rps4AB)	
70	 36.75       59335..59832    	 -	165	15897041	rps13AB	SSO0074	J	SSU ribosomal protein S13AB (rps13AB)	
71	 33.72       59853..61151    	 -	432	15897042	-	SSO0076	O	Conserved hypothetical protein	
72	 27.29 -2    61275..61688    	 +	137	15897043	-	SSO0077	-	Hypothetical protein	
73	 35.06       61719..62819    	 +	366	15897044	tyrS	SSO0078	J	Tyrosyl-tRNA synthetase (tyrS)	
74	 35.22       62827..64047    	 +	406	15897045	dnaG	SSO0079	L	Bacterial-like DNA primase (dnaG)	
75	 30.85 -1    64034..66328    	 -	764	15897046	dpo3	SSO0081	L	DNA polymerase III (DNA polymerase B3) (pfu polymerase). (dpo3)	
76	 31.80 -1    66380..66835    	 -	151	15897047	-	SSO0082	R	N-terminal acetyltransferase complex ard1 subunit	
77	 33.91       66854..67888    	 +	344	15897048	pelA	SSO0083	R	Cell division protein pelota homolog (pelA)	
78	 32.38       67859..68911    	 -	350	15897049	-	SSO0084	R	Conserved hypothetical protein	
79	 34.02       68859..69437    	 -	192	15897050	-	SSO0085	-	Conserved hypothetical protein	
80	 35.82       69430..69993    	 -	187	15897051	-	SSO0086	R	Conserved hypothetical protein	
81	 32.99       70054..71214    	 +	386	15897052	-	SSO0087	M	Conserved hypothetical protein	
82	 34.68       71195..72679    	 -	494	15897053	lysS	SSO0090	J	Lysyl-tRNA synthetase (lysS)	
83	 37.15       73708..74100    	 -	130	15897054	rpl7AE	SSO0091	J	LSU ribosomal protein L7AE (rpl7AE)	
84	 35.71       74314..76041    	 -	575	15897055	gltX	SSO0093	J	Glutamyl-tRNA synthetase (gltX)	
85	 34.64       76025..76711    	 -	228	15897056	-	SSO0094	R	Conserved hypothetical protein	
86	 32.17       76708..77907    	 -	399	15897057	-	SSO0095	R	Conserved hypothetical protein	
87	 36.25       78293..79423    	 -	376	15897058	-	SSO0097	S	Conserved hypothetical protein	
88	 34.11       79467..80372    	 -	301	15897059	-	SSO0098	J	Methionine aminopeptidase 2	
89	 36.26       80426..81109    	 +	227	15897060	-	SSO0099	R	Conserved hypothetical protein	
90	 32.84       81106..82512    	 +	468	15897061	pheS	SSO0100	J	Phenylalanyl-tRNA synthetase alpha subunit (pheS)	
91	 32.54       82518..84152    	 +	544	15897062	pheT	SSO0101	J	Phenylalanyl-tRNA synthetase beta subunit (pheT)	
92	 34.05       84240..84935    	 +	231	15897063	-	SSO0102	R	Esterase, tropinesterase related protein	
93	 35.53       84916..85734    	 -	272	15897064	cinA	SSO0103	R	Competence damage protein (cinA)	
94	 35.49       85752..86957    	 +	401	15897065	aspB-1	SSO0104	K	Aspartate aminotransferase (aspB-1)	
95	 33.68       86950..87813    	 -	287	15897066	-	SSO0106	C	Hypothetical protein	
96	 33.06       87870..88241    	 +	123	15897067	-	SSO0107	-	Conserved hypothetical protein	
97	 32.57       88218..88610    	 -	130	15897068	-	SSO0108	-	Hypothetical protein	
98	 33.19       88678..89373    	 +	231	15897069	-	SSO0109	-	Conserved hypothetical protein	
99	 33.55       89415..90317    	 +	300	15897070	-	SSO0110	K	Conserved hypothetical protein	
100	 33.33       90305..90655    	 +	116	15897071	-	SSO0111	-	Hypothetical protein	

 
 36.39 MEAN 
 
 4.50  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.