IslandPath Analysis: Salmonella enterica subsp. enterica serovar Typhi Ty2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.24   STD DEV: 5.57
Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome - 0..4791961
4323 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 54.55         190..255      	 +	21	29140544	thrL	t0001	-	thr operon leader peptide	
2	 56.15         337..2799     	 +	820	29140545	thrA	t0002	-	aspartokinase I	
3	 57.85 +1     2801..3730     	 +	309	29140546	thrB	t0003	-	homoserine kinase	
4	 55.94        3734..5020     	 +	428	29140547	thrC	t0004	-	threonine synthase	
5	 50.39        5114..5887     	 -	257	29140548	yaaA	t0005	-	conserved hypothetical protein	
6	 55.70        5966..7396     	 -	476	29140549	yaaJ	t0006	-	putative amino-acid transport protein	
7	 53.77        7665..8618     	 +	317	29140550	talB	t0007	-	transaldolase B	
8	 56.01        8729..9319     	 +	196	29140551	mog	t0008	-	molybdopterin biosynthesis Mog protein	
9	 53.79        9376..9942     	 -	188	29140552	yaaH	t0009	-	conserved hypothetical protein	
10	 53.92       10092..10805    	 -	237	29140553	-	t0010	-	conserved hypothetical protein	
11	 49.38       10841..11245    	 -	134	29140554	yaaI	t0011	-	conserved hypothetical protein	
12	 52.74       11594..13510    	 +	638	29140555	dnaK	t0012	-	DnaK protein	
13	 54.12       13596..14735    	 +	379	29140556	dnaJ	t0013	-	DnaJ protein	
14	 41.03 -2    15020..15967    	 +	315	29140557	-	t0014	-	putative regulatory protein	
15	 40.00 -2    16094..16438    	 +	114	29140558	-	t0015	-	putative phage protein	
16	 50.94       16499..17032    	 -	177	29140559	-	t0016	-	conserved hypothetical protein	
17	 38.29 -2    17049..17492    	 -	147	29140560	-	t0017	-	putative membrane protein	
18	 51.62       17873..19972    	 +	699	29140561	-	t0018	-	putative chitinase	
19	 55.30       20004..21155    	 +	383	29140562	-	t0019	-	hypothetical protein	
20	 54.05       21198..23060    	 +	620	29140563	-	t0020	-	hypothetical protein	
21	 46.38 -1    23341..24045    	 +	234	29140564	-	t0021	-	conserved hypothetical protein	
22	 52.12       24473..25015    	 +	180	29140565	bcfA	t0022	-	fimbrial subunit	
23	 51.24       25116..25802    	 +	228	29140566	bcfB	t0023	-	fimbrial chaperone	
24	 50.40       28429..29436    	 +	335	29140567	bcfD	t0025	-	fimbrial subunit	
25	 47.62       29437..29982    	 +	181	29140568	bcfE	t0026	-	fimbrial subunit	
26	 55.88       29998..30516    	 +	172	29140569	bcfF	t0027	-	fimbrial subunit	
27	 54.18       30509..31213    	 +	234	29140570	bcfG	t0028	-	fimbrial chaperone	
28	 54.49       31278..32123    	 +	281	29140571	-	t0029	-	putative exported protein	
29	 41.32 -1    32162..32449    	 +	95	29140572	-	t0030	-	putative membrane protein	
30	 36.89 -2    32549..32998    	 -	149	29140573	-	t0031	-	putative membrane protein	
31	 38.45 -2    33368..34363    	 +	331	29140574	-	t0032	-	putative transcriptional regulator (lysR family)	
32	 38.24 -2    34511..34816    	 -	101	29140575	-	t0033	-	putative transcriptional regulator	
33	 45.90 -1    35339..37057    	 +	572	29140576	-	t0034	-	possible sulfatase	
34	 46.69       37103..38674    	 -	523	29140577	-	t0035	-	putative secreted 5'-nucleotidase	
35	 43.96 -1    38773..39534    	 -	253	29140578	-	t0036	-	putative exported protein	
36	 52.54       40128..41621    	 +	497	29140579	-	t0037	-	putative secreted sulfatase	
37	 49.54       41720..42910    	 +	396	29140580	-	t0038	-	possible sulfatase regulatory protein	
38	 50.00       43198..44181    	 +	327	29140581	-	t0039	-	hypothetical protein	
39	 50.23       44308..46023    	 +	571	29140582	-	t0040	-	possible sulfatase	
40	 56.38       46186..47352    	 +	388	29140583	nhaA	t0041	-	Na(+)/H(+) antiporter 1	
41	 50.67       47414..48313    	 +	299	29140584	nhaR	t0042	-	transcriptional activator protein NhaR	
42	 54.26       48368..50407    	 -	679	29140585	-	t0043	-	putative glycosyl hydrolase	
43	 48.69       50447..51820    	 -	457	29140586	-	t0044	-	putative transport protein	
44	 46.59 -1    52277..52540    	 -	87	29140587	rpsT	t0045	-	30S ribosomal protein S20	
45	 47.69       52646..52861    	 +	71	29140588	-	t0046	-	conserved hypothetical protein	
46	 56.55       52869..53807    	 +	312	29140589	ribF	t0047	-	riboflavin biosynthesis protein RibF	
47	 54.85       53852..56686    	 +	944	29140590	ileS	t0048	-	isoleucyl-tRNA synthetase	
48	 51.70       56686..57186    	 +	166	29140591	lspA	t0049	-	lipoprotein signal peptidase	
49	 54.67       57341..57790    	 +	149	29140592	fkpB	t0050	-	probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase	
50	 56.78       57793..58743    	 +	316	29140593	lytB	t0051	-	LytB protein	
51	 48.55       58943..60145    	 +	400	29140594	-	t0052	-	hypothetical protein	
52	 56.35       60161..61081    	 +	306	29140595	yaaF	t0053	-	putative nucleoside hydrolase (IUNH family)	
53	 48.47       61103..61789    	 -	228	29140596	citB	t0054	-	transcriptional regulatory protein CitB	
54	 47.84       61791..63410    	 -	539	29140597	citA	t0055	-	sensor kinase CitA	
55	 63.52 +2    63545..64846    	 -	433	29140598	oadB	t0056	-	oxaloacetate decarboxylase beta chain	
56	 64.02 +2    64859..66634    	 -	591	29140599	oadA	t0057	-	oxaloacetate decarboxylase alpha chain	
57	 56.25       66650..66889    	 -	79	29140600	oadG	t0058	-	oxaloacetate decarboxylase gamma chain	
58	 49.22       67048..68388    	 -	446	29140601	citC	t0059	-	citrate-sodium symporter	
59	 53.54       68633..69676    	 +	347	29140602	citC	t0060	-	[citrate (PRO-3S)-lyase] ligase	
60	 56.46       69706..69999    	 +	97	29140603	citD	t0061	-	citrate lyase acyl carrier protein	
61	 55.40       69996..70865    	 +	289	29140604	citE	t0062	-	citrate lyase beta chain	
62	 54.96       70876..72396    	 +	506	29140605	citF	t0063	-	citrate lyase alpha chain	
63	 55.98       72396..72947    	 +	183	29140606	citX	t0064	-	citx protein	
64	 54.79       72925..73833    	 +	302	29140607	citG	t0065	-	CitG protein	
65	 56.69       74013..74834    	 +	273	29140608	dapB	t0066	-	dihydrodipicolinate reductase	
66	 55.61       75687..76835    	 +	382	29140609	carA	t0067	-	carbamoyl-phosphate synthase small chain	
67	 58.95 +1    76851..80078    	 +	1075	29140610	carB	t0068	-	carbamoyl-phosphate synthase large chain	
68	 46.46 -1    80352..80747    	 +	131	29140611	caiF	t0069	-	transcriptional activator CaiF	
69	 55.78       80825..81421    	 -	198	29140612	caiE	t0070	-	carnitine operon protein CaiE	
70	 56.49       81533..82318    	 -	261	29140613	caiD	t0071	-	carnitine racemase	
71	 51.09       82372..83925    	 -	517	29140614	caiC	t0072	-	probable crotonobetaine/carnitine-CoA ligase	
72	 53.61       83988..85205    	 -	405	29140615	caiB	t0073	-	L-carnitine dehydratase	
73	 52.49       85317..86459    	 -	380	29140616	caiA	t0074	-	probable carnitine operon oxidoreductase CaiA	
74	 53.75       86494..88011    	 -	505	29140617	caiT	t0075	-	probable carnitine transporter	
75	 52.01       88492..89262    	 +	256	29140618	fixA	t0076	-	FixA protein	
76	 59.34 +1    89278..90219    	 +	313	29140619	fixB	t0077	-	FixB protein	
77	 55.48       90269..91555    	 +	428	29140620	fixC	t0078	-	FixC protein	
78	 53.82       91552..91839    	 +	95	29140621	fixX	t0079	-	ferredoxin like protein FixX	
79	 54.14       91987..93327    	 +	446	29140622	yaaU	t0080	-	putative metabolite transport protein	
80	 48.48       93416..93646    	 +	76	29140623	-	t0081	-	putative lipoprotein	
81	 46.57 -1    93931..94353    	 +	140	29140624	-	t0082	-	probable secreted protein	
82	 47.42       94577..94867    	 -	96	29140625	-	t0083	-	probable secreted protein	
83	 38.46 -2    95077..95271    	 +	64	29140626	-	t0084	-	putative membrane protein	
84	 48.44       95765..95989    	 +	74	29140627	-	t0085	-	probable secreted protein	
85	 47.20       96041..97345    	 +	434	29140628	-	t0086	-	puatative sulfatase	
86	 40.38 -2    97342..97653    	 +	103	29140629	-	t0087	-	hypothetical protein	
87	 53.48       98060..98590    	 +	176	29140630	yabF	t0088	-	putative NAD(P)H oxidoreductase	
88	 57.86 +1    98583..100445   	 +	620	29140631	kefC	t0089	-	glutathione-regulated potassium-efflux system protein KefC	
89	 53.54      100644..101123   	 +	159	29140632	folA	t0090	-	dihydrofolate reductase type I	
90	 55.48      101219..102067   	 -	282	29140633	apaH	t0091	-	bis(5'-nucleosyl)-tetraphosphatase	
91	 53.97      102078..102455   	 -	125	29140634	apaG	t0092	-	CorD protein	
92	 52.68      102458..103279   	 -	273	29140635	ksgA	t0093	-	dimethyladenosine transferase	
93	 58.79 +1   103276..104265   	 -	329	29140636	pdxA	t0094	-	pyridoxal phosphate biosynthetic protein PdxA	
94	 54.16      104265..105551   	 -	428	29140637	surA	t0095	-	survival protein SurA precursor	
95	 52.91      105605..107959   	 -	784	29140638	imp	t0096	-	organic solvent tolerance protein precursor	
96	 54.00      108213..109025   	 +	270	29140639	djlA	t0097	-	DnaJ-like protein	
97	 57.58      109120..109779   	 -	219	29140640	rluA	t0098	-	ribosomal large subunit pseudouridine synthase A	
98	 57.03      109791..112697   	 -	968	29140641	hepA	t0099	-	probable ATP-dependent helicase HepA	
99	 56.59      112871..115222   	 -	783	29140642	polB	t0100	-	DNA polymerase II	
100	 45.80 -1   115562..116002   	 -	146	29140643	-	t0101	-	putative IS element transposase	

 
 52.24 MEAN 
 
 5.57  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.