IslandPath Analysis: Streptococcus pyogenes SSI-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.53   STD DEV: 3.75
Streptococcus pyogenes SSI-1, complete genome - 0..1894275
1861 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.26 -1      232..1587     	 +	451	28894913	-	SPs0001	-	chromosomal initiator protein	
2	 33.42 -1     1742..2878     	 +	378	28894914	-	SPs0002	-	putative DNA polymerase III beta subunit	
3	 32.32 -1     2953..3150     	 +	65	28894915	-	SPs0003	-	conserved hypothetical protein	
4	 37.28        3480..4595     	 +	371	28894916	-	SPs0004	-	putative GTP-binding protein	
5	 31.75 -1     4665..5234     	 +	189	28894917	-	SPs0005	-	putative peptidyl-tRNA hydrolase	
6	 35.42        5237..8740     	 +	1167	28894918	-	SPs0006	-	putative transcription-repair coupling factor	
7	 30.98 -2     8878..9174     	 +	98	28894919	-	SPs0007	-	conserved hypothetical protein	
8	 26.34 -2     9161..9532     	 +	123	28894920	-	SPs0008	-	putative cell division protein (DivIC)	
9	 26.98 -2     9529..9654     	 +	41	28894921	-	SPs0009	-	hypothetical protein	
10	 31.47 -1     9667..10953    	 +	428	28894922	-	SPs0010	-	hypothetical protein	
11	 28.52 -2    10950..12236    	 +	428	28894923	-	SPs0011	-	putative cell cycle protein	
12	 30.76 -2    12241..12783    	 +	180	28894924	-	SPs0012	-	putative hypoxanthine-guanine phosphoribosyltransferase	
13	 37.63       12805..14784    	 +	659	28894925	-	SPs0013	-	putative cell division protein	
14	 32.58 -1    15041..16501    	 +	486	28894926	-	SPs0014	-	putative amino acid permease	
15	 40.69       25194..26390    	 +	398	28894927	-	SPs0015	-	putative secreted protein Streptputative secreted protein	
16	 38.94       26643..27605    	 +	320	28894928	-	SPs0016	-	putative ribose-phosphate pyrophosphokinase	
17	 31.22 -1    27791..28546    	 +	251	28894929	-	SPs0017	-	conserved hypothetical protein	
18	 38.10       28649..29656    	 +	335	28894930	-	SPs0018	-	putative fatty acid/phospholipid synthesis protein	
19	 30.86 -2    29649..29891    	 +	80	28894931	-	SPs0019	-	putative acyl carrier protein	
20	 35.78       30013..30747    	 +	244	28894932	-	SPs0020	-	putative phosphoribosylaminoimidazole - succinocarboxamide synthase (SAICAR synthetase)	
21	 44.82 +1    30872..34597    	 +	1241	28894933	-	SPs0021	-	putative phosphoribosylformylglycinamidine synthase II	
22	 38.76       34831..36285    	 +	484	28894934	-	SPs0022	-	putative phosphoribosylpyrophosphate amidotransferase	
23	 42.82 +1    36313..37335    	 +	340	28894935	-	SPs0023	-	putative phosphoribosylformylglycinamide cyclo-ligase	
24	 47.03 +2    37503..38057    	 +	184	28894936	-	SPs0024	-	putative phosphoribosylglycinamide formyltransferase	
25	 47.16 +2    38241..39788    	 +	515	28894937	-	SPs0025	-	putative phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase	
26	 39.29       39847..40971    	 -	374	28894938	-	SPs0026	-	putative choline binding protein	
27	 47.20 +2    41136..42491    	 +	451	28894939	-	SPs0027	-	putative phosphoribosylamine-glycine ligase	
28	 48.69 +2    42649..43260    	 +	203	28894940	-	SPs0028	-	putative phosphoribosylaminoimidazole carboxylase I	
29	 50.09 +2    43211..44320    	 +	369	28894941	-	SPs0029	-	putative phosphoribosylaminoimidazole carboxylase II	
30	 28.71 -2    44341..45681    	 +	446	28894942	-	SPs0030	-	hypothetical protein	
31	 44.86 +1    46050..47342    	 +	430	28894943	-	SPs0031	-	putative adenylosuccinate lyase	
32	 29.61 -2    47473..48384    	 +	303	28894944	-	SPs0032	-	hypothetical protein	
33	 39.64       48604..49602    	 +	332	28894945	-	SPs0033	-	putative Holliday junction DNA helicase, subunit B	
34	 35.62       49740..50177    	 +	145	28894946	-	SPs0034	-	putative protein-tyrosine phosphatase	
35	 35.07       50200..50601    	 +	133	28894947	-	SPs0035	-	hypothetical protein	
36	 36.71       50598..52373    	 +	591	28894948	-	SPs0036	-	putative acyltransferase	
37	 40.33       52682..55324    	 +	880	28894949	-	SPs0037	-	putative alcohol dehydrogenase, iron-containing	
38	 42.52 +1    55745..56593    	 +	282	28894950	-	SPs0038	-	putative alcohol dehydrogenase I	
39	 41.63       56981..58270    	 +	429	28894951	-	SPs0039	-	conserved hypothetical protein	
40	 40.13       58469..58777    	 +	102	28894952	-	SPs0040	-	30S ribosomal protein S10	
41	 30.63 -2    58840..58950    	 +	36	28894953	-	SPs0041	-	hypothetical protein	
42	 41.95       59025..59651    	 +	208	28894954	-	SPs0042	-	50S ribosomal protein L3	
43	 42.31 +1    59675..60298    	 +	207	28894955	-	SPs0043	-	50S ribosomal protein L4	
44	 37.37       60298..60594    	 +	98	28894956	-	SPs0044	-	50S ribosomal protein L23	
45	 43.85 +1    60657..61445    	 +	262	28894957	-	SPs0045	-	50S ribosomal protein L2	
46	 40.50       61584..61862    	 +	92	28894958	-	SPs0046	-	30S ribosomal protein S19	
47	 39.71       61878..62222    	 +	114	28894959	-	SPs0047	-	50S ribosomal protein L22	
48	 41.47       62262..62888    	 +	208	28894960	-	SPs0048	-	30S ribosomal protein S3	
49	 43.24 +1    62892..63305    	 +	137	28894961	-	SPs0049	-	50S ribosomal protein L16	
50	 34.78 -1    63315..63521    	 +	68	28894962	-	SPs0050	-	50S ribosomal protein L29	
51	 38.31       63547..63807    	 +	86	28894963	-	SPs0051	-	30S ribosomal protein S17	
52	 44.17 +1    63832..64200    	 +	122	28894964	-	SPs0052	-	50S ribosomal protein L14	
53	 36.60       64279..64584    	 +	101	28894965	-	SPs0053	-	50S ribosomal protein L24	
54	 40.52       64608..65150    	 +	180	28894966	-	SPs0054	-	50S ribosomal protein L5	
55	 39.25       65166..65351    	 +	61	28894967	-	SPs0055	-	30S ribosomal protein S14	
56	 36.84       65502..65900    	 +	132	28894968	-	SPs0056	-	30S ribosomal protein S8	
57	 38.92       66103..66639    	 +	178	28894969	-	SPs0057	-	50S ribosomal protein L6	
58	 44.19 +1    66834..67100    	 +	88	28894970	-	SPs0058	-	50S ribosomal protein L18	
59	 42.42 +1    67119..67613    	 +	164	28894971	-	SPs0059	-	30S ribosomal protein S5	
60	 37.16       67628..67810    	 +	60	28894972	-	SPs0060	-	50S ribosomal protein L30	
61	 39.68       68026..68466    	 +	146	28894973	-	SPs0061	-	50S ribosomal protein L15	
62	 36.48       68483..69787    	 +	434	28894974	-	SPs0062	-	putative preprotein translocase	
63	 39.44       69937..70575    	 +	212	28894975	-	SPs0063	-	putative adenylate kinase	
64	 36.26       70741..70911    	 +	56	28894976	-	SPs0064	-	putative translation initiation factor IF-1	
65	 37.61       70937..71053    	 +	38	28894977	-	SPs0065	-	50S ribosomal protein B	
66	 39.34       71071..71436    	 +	121	28894978	-	SPs0066	-	30S ribosomal protein S13	
67	 44.01 +1    71454..71837    	 +	127	28894979	-	SPs0067	-	30S ribosomal protein S11	
68	 37.91       71883..72821    	 +	312	28894980	-	SPs0068	-	putative DNA-directed RNA polymerase, alpha subunit	
69	 40.57       72836..73222    	 +	128	28894981	-	SPs0069	-	50S ribosomal protein L17	
70	 33.78 -1    81975..82418    	 +	147	28894982	-	SPs0070	-	putative repressor protein	
71	 40.83       82422..83141    	 +	239	28894983	-	SPs0071	-	putative ABC transporter (ATP-binding protein)	
72	 38.69       83128..83949    	 +	273	28894984	-	SPs0072	-	putative ABC transporter (permease)	
73	 40.62       83989..84372    	 -	127	28894985	-	SPs0073	-	putative histidine triad (HIT) protein	
74	 41.61       84428..85684    	 -	418	28894986	-	SPs0074	-	putative tyrosine-tRNA ligase	
75	 40.29       85776..88088    	 +	770	28894987	-	SPs0075	-	putative penicillin-binding protein 1b	
76	 43.06 +1    88352..91918    	 +	1188	28894988	-	SPs0076	-	putative DNA-dependent RNA polymerase subunit beta	
77	 44.12 +1    92036..95632    	 +	1198	28894989	-	SPs0077	-	putative DNA-dependent RNA polymerase beta prime subunit	
78	 34.97       95784..96149    	 +	121	28894990	-	SPs0078	-	putative DNA binding protein	
79	 37.59       96242..97180    	 +	312	28894991	-	SPs0079	-	putative ABC transporter (subunit ComYA)	
80	 35.57       97302..98150    	 +	282	28894992	-	SPs0080	-	putative competence protein, ABC transporter subunit	
81	 34.83       98212..98478    	 +	88	28894993	-	SPs0081	-	putative competence protein	
82	 33.56 -1    98438..98881    	 +	147	28894994	-	SPs0082	-	putative competence protein	
83	 38.82       98886..99122    	 +	78	28894995	-	SPs0083	-	hypothetical protein	
84	 35.40       99115..99549    	 +	144	28894996	-	SPs0084	-	putative competence protein	
85	 35.47       99533..99859    	 +	108	28894997	-	SPs0085	-	hypothetical protein	
86	 38.16       99957..100910   	 +	317	28894998	-	SPs0086	-	conserved hypothetical protein	
87	 39.10      100969..102165   	 +	398	28894999	-	SPs0087	-	putative acetate kinase	
88	 35.92      102366..102674   	 +	102	28895000	-	SPs0088	-	hypothetical protein	
89	 43.58 +1   102757..103527   	 -	256	28895001	-	SPs0089	-	putative pyrroline carboxylate reductase	
90	 45.51 +1   103575..104642   	 -	355	28895002	-	SPs0090	-	putative glutamyl-aminopeptidase	
91	 38.18      104752..104916   	 -	54	28895003	-	SPs0091	-	hypothetical protein	
92	 37.07      105098..105391   	 +	97	28895004	-	SPs0092	-	hypothetical protein	
93	 34.91      105388..105705   	 +	105	28895005	-	SPs0093	-	putative H-type thioredoxin	
94	 42.58 +1   105723..106349   	 +	208	28895006	-	SPs0094	-	conserved hypothetical protein	
95	 38.13      106501..106896   	 +	131	28895007	-	SPs0095	-	putative single stranded DNA-binding protein	
96	 39.88      107156..107797   	 -	213	28895008	-	SPs0096	-	hypothetical protein	
97	 45.81 +1   107817..108794   	 -	325	28895009	-	SPs0097	-	putative transcriptional regulator	
98	 41.92      108781..109653   	 -	290	28895010	-	SPs0098	-	putative heat shock protein HSP33	
99	 31.97 -1   109779..111314   	 -	511	28895011	-	SPs0099	-	Nra	
100	 35.03      111745..113979   	 +	744	28895012	-	SPs0100	-	Cpa	

 
 38.53 MEAN 
 
 3.75  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.