IslandPath Analysis: Streptococcus pyogenes



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.64   STD DEV: 3.66
Streptococcus pyogenes, complete genome - 0..1852441
1697 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.41 -1      232..1587     	 +	451	15674251	dnaA	SPy0002	L	Chromosomal initiator protein	
2	 33.16 -1     1742..2878     	 +	378	15674252	dnaN	SPy0003	L	beta subunit of DNA polymerase III	
3	 32.32 -1     2953..3150     	 +	65	15674253	-	SPy0004	-	conserved hypothetical protein	
4	 37.19        3480..4595     	 +	371	15674254	-	SPy0006	R	putative GTP-binding protein	
5	 31.75 -1     4665..5234     	 +	189	15674255	pth	SPy0007	J	putative peptidyl-tRNA hydrolase	
6	 35.39        5237..8740     	 +	1167	15674256	trcF	SPy0008	L	putative transcription-repair coupling factor	
7	 30.98 -2     8879..9175     	 +	98	15674257	-	SPy0009	J	conserved hypothetical proteins	
8	 26.88 -2     9162..9533     	 +	123	15674258	divIC	SPy0010	-	putative cell division protein (DivIC)	
9	 31.55 -1     9668..10954    	 +	428	15674259	-	SPy0012	-	hypothetical protein	
10	 28.44 -2    10951..12237    	 +	428	15674260	-	SPy0013	D	putative cell-cycle protein	
11	 37.68       12806..14785    	 +	659	15674261	ftsH	SPy0015	O	putative cell division protein	
12	 33.12 -1    15110..16501    	 +	463	15674262	-	SPy0016	E	putative amino acid permease	
13	 40.77       30546..31742    	 +	398	15674263	-	SPy0019	S	putative secreted protein	
14	 39.04       31995..32957    	 +	320	15674264	prsA.2	SPy0020	F	putative ribose-phosphate pyrophosphokinase	
15	 31.35 -1    33143..33898    	 +	251	15674265	-	SPy0021	L	conserved hypothetical protein	
16	 38.10       34001..35008    	 +	335	15674266	plsX	SPy0022	I	putative fatty acid/phospholipid synthesis protein	
17	 30.04 -2    35001..35243    	 +	80	15674267	acpP.2	SPy0023	I	putative acyl carrier protein	
18	 35.92       35364..36098    	 +	244	15674268	purC	SPy0024	F	putative phosphoribosylaminoimidazole - succinocarboxamide synthase (SAICAR synthetase)	
19	 44.62 +1    36174..39947    	 +	1257	15674269	-	SPy0025	F	putative phosphoribosylformylglycinamidine synthase II	
20	 39.11       40108..41562    	 +	484	15674270	purF	SPy0026	F	putative phosphoribosylpyrophosphate amidotransferase	
21	 42.72 +1    41590..42612    	 +	340	15674271	purM	SPy0027	F	putative phosphoribosylformylglycinamide cyclo-ligase	
22	 46.49 +2    42780..43334    	 +	184	15674272	purN	SPy0028	F	Phosphoribosylglycinamide formyltransferase	
23	 39.56       45123..46247    	 -	374	15674273	-	SPy0031	-	putative choline binding protein	
24	 48.74 +2    46500..47765    	 +	421	15674274	purD	SPy0032	F	phosphoribosylamine-glycine ligase	
25	 50.20 +2    48043..48534    	 +	163	15674275	purE	SPy0033	F	putative phosphoribosylaminoimidazole carboxylase I	
26	 49.73 +2    48485..49594    	 +	369	15674276	purK	SPy0034	F	phosphoribosylaminoimidazole carboxylase II	
27	 29.87 -2    49621..51264    	 +	547	15674277	abiR	SPy0035	-	possible abortive infection phage resistance protein	
28	 44.93 +1    51282..52574    	 +	430	15674278	purB	SPy0036	F	adenylosuccinate lyase	
29	 29.39 -2    52706..53617    	 +	303	15674279	-	SPy0037	K	hypothetical protein	
30	 39.64       53843..54841    	 +	332	15674280	ruvB	SPy0038	L	putative Holliday junction DNA helicase, subunit B	
31	 35.62       54979..55416    	 +	145	15674281	-	SPy0039	T	putative protein-tyrosine phosphatase	
32	 36.07       55439..55840    	 +	133	15674282	-	SPy0040	-	hypothetical protein	
33	 36.54       55837..57612    	 +	591	15674283	-	SPy0041	I	putative acyltransferase	
34	 42.28       60815..61831    	 +	338	15674284	adhA	SPy0044	R	putative alcohol dehydrogenase I	
35	 41.14       62219..63511    	 +	430	15674285	-	SPy0045	Q	conserved hypothetical protein	
36	 40.13       63712..64020    	 +	102	15674286	rpsJ	SPy0047	J	30S ribosomal protein S10	
37	 41.63       64268..64894    	 +	208	15674287	rplC	SPy0049	J	50S ribosomal protein L3	
38	 42.47 +1    64918..65541    	 +	207	15674288	rplD	SPy0050	J	50S ribosomal protein L4	
39	 37.71       65541..65837    	 +	98	15674289	rplW	SPy0051	J	50S ribosomal protein L23	
40	 43.53 +1    65855..66688    	 +	277	15674290	rplB	SPy0052	J	50S ribosomal protein L2	
41	 40.50       66827..67105    	 +	92	15674291	rpsS	SPy0053	J	30S ribosomal protein S19	
42	 39.71       67121..67465    	 +	114	15674292	rplV	SPy0055	J	50S ribosomal protein L22	
43	 41.59       67478..68131    	 +	217	15674293	rpsC	SPy0056	J	30S ribosomal protein S3	
44	 43.24 +1    68135..68548    	 +	137	15674294	rplP	SPy0057	J	50S ribosomal protein L16	
45	 34.78 -1    68558..68764    	 +	68	15674295	rpmC	SPy0059	J	50S ribosomal protein L29	
46	 38.31       68790..69050    	 +	86	15674296	rpsQ	SPy0060	J	30S ribosomal protein S17	
47	 44.17 +1    69075..69443    	 +	122	15674297	-	SPy0061	J	50S ribosomal protein L14	
48	 36.27       69522..69827    	 +	101	15674298	rplX	SPy0062	J	50S ribosomal protein L24	
49	 40.52       69851..70393    	 +	180	15674299	rplE	SPy0063	J	50S ribosomal protein L5	
50	 39.25       70409..70594    	 +	61	15674300	rpsN	SPy0064	J	30S ribosomal protein S14	
51	 36.59       70745..71143    	 +	132	15674301	rpsH	SPy0065	J	30S ribosomal protein S8	
52	 39.11       71346..71882    	 +	178	15674302	rplF	SPy0066	J	50S ribosomal protein L6	
53	 45.94 +1    71987..72343    	 +	118	15674303	rplR	SPy0067	J	50S ribosomal protein L18	
54	 42.42 +1    72362..72856    	 +	164	15674304	rpsE	SPy0069	J	30S ribosomal protein S5	
55	 37.16       72871..73053    	 +	60	15674305	rpmD	SPy0071	J	50S ribosomal protein L30	
56	 39.68       73267..73707    	 +	146	15674306	rplO	SPy0072	J	50S ribosomal protein L15	
57	 36.40       73724..75028    	 +	434	15674307	secY	SPy0073	N	putative preprotein translocase	
58	 39.44       75178..75816    	 +	212	15674308	adk	SPy0074	F	adenylate kinase	
59	 36.99       75934..76152    	 +	72	15674309	infA	SPy0075	J	putative translation initiation factor IF-1	
60	 37.61       76178..76294    	 +	38	15674310	rpmJ	SPy0076	J	50S ribosomal protein B	
61	 39.34       76312..76677    	 +	121	15674311	rpsM	SPy0077	J	30S ribosomal protein S13	
62	 44.27 +1    76695..77078    	 +	127	15674312	rpsK	SPy0078	J	30S ribosomal protein S11	
63	 38.02       77124..78062    	 +	312	15674313	rpoA	SPy0080	K	DNA-directed RNA polymerase alpha subunit	
64	 40.57       78077..78463    	 +	128	15675947	rplQ	SPy0080a	J	ribosomal protein L17	
65	 42.47 +1    85708..85893    	 +	61	15674314	-	SPy0084	-	hypothetical protein	
66	 34.01 -1    87214..87657    	 +	147	15674315	adcR	SPy0092	K	putative repressor protein	
67	 40.97       87661..88380    	 +	239	15674316	adcC	SPy0093	P	ABC transporter (ATP-binding protein)	
68	 38.48       88373..89188    	 +	271	15674317	adcB	SPy0094	P	putative ABC transporter (permease)	
69	 40.62       89228..89611    	 -	127	15674318	-	SPy0095	F	putative histidine triad (HIT) protein	
70	 41.45       89662..90918    	 -	418	15674319	tyrS	SPy0096	J	putative tyrosine-tRNA ligase	
71	 40.25       91010..93322    	 +	770	15674320	pbp1b	SPy0097	M	putative penicillin-binding protein 1b	
72	 43.12 +1    93586..97152    	 +	1188	15674321	rpoB	SPy0098	K	putative DNA-dependent RNA polymerase subunit beta	
73	 43.74 +1    97243..100884   	 +	1213	15674322	rpoC	SPy0099	K	DNA-dependent RNA polymerase, B' subunit	
74	 34.70 -1   101036..101401   	 +	121	15674323	-	SPy0100	-	putative DNA binding protein	
75	 37.38      101494..102432   	 +	312	15674324	comYA	SPy0101	N	putative ABC transporter subunit ComYA	
76	 35.69      102554..103402   	 +	282	15674325	comYB	SPy0102	N	putative competence protein, ABC transporter subunit	
77	 33.94 -1   103404..103730   	 +	108	15674326	comYC	SPy0103	-	putative competence protein	
78	 34.27 -1   103705..104133   	 +	142	15674327	-	SPy0104	-	putative competence protein	
79	 38.40      104138..104374   	 +	78	15674328	-	SPy0105	-	hypothetical protein	
80	 35.17      104367..104801   	 +	144	15674329	comYD	SPy0106	-	putative competence protein	
81	 35.47      104785..105111   	 +	108	15674330	-	SPy0107	-	hypothetical protein	
82	 38.36      105209..106162   	 +	317	15674331	-	SPy0108	L	conserved hypothetical protein	
83	 38.93      106221..107417   	 +	398	15674332	ackA	SPy0109	C	acetate kinase	
84	 35.60      107604..107912   	 +	102	15674333	-	SPy0110	-	hypothetical protein	
85	 43.84 +1   107995..108765   	 -	256	15674334	proC	SPy0112	E	putative pyrroline carboxylate reductase	
86	 45.22 +1   108813..109880   	 -	355	15674335	pepA	SPy0115	G	putative glutamyl-aminopeptidase	
87	 38.18      109990..110154   	 -	54	15674336	-	SPy0116	-	hypothetical protein	
88	 36.84      110345..110629   	 +	94	15674337	-	SPy0117	-	hypothetical protein	
89	 40.03      112394..113035   	 -	213	15674338	-	SPy0121	F	putative deoxyguanosine kinase/deoxyadenosine kinase(I) subunit	
90	 45.50 +1   113055..114032   	 -	325	15674339	-	SPy0122	R	possible transcriptional regulator	
91	 42.04      114019..114891   	 -	290	15674340	-	SPy0123	O	putative heat shock protein HSP33	
92	 34.07 -1   115038..116531   	 -	497	15674341	rofA	SPy0124	-	regulatory protein	
93	 32.83 -1   119222..119617   	 +	131	15674342	-	SPy0127	-	putative signal peptidase I	
94	 35.00      119650..120672   	 +	340	15674343	-	SPy0128	-	hypothetical protein	
95	 30.67 -2   120682..121395   	 +	237	15674344	-	SPy0129	-	hypothetical protein	
96	 31.79 -1   121417..122064   	 +	215	15674345	-	SPy0130	-	hypothetical protein	
97	 42.35 +1   122251..123603   	 -	450	15674346	-	SPy0131	L	conserved hypothetical protein	
98	 40.74      123814..124164   	 -	116	15674347	-	SPy0133	L	conserved hypothetical protein	
99	 39.55      124468..125223   	 +	251	15674348	-	SPy0135	M	putative fimbria-associated protein	
100	 33.93 -1   125417..126082   	 -	221	15674349	-	SPy0136	-	hypothetical protein	

 
 38.64 MEAN 
 
 3.66  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.