IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae TIGR4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.46 STD DEV: 5.03
Streptococcus pneumoniae, complete genome - 0..2160837
2094 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.49         197..1558     	 +	453	15899950	-	SP0001	L	chromosomal replication initiator protein DnaA	
2	 34.30 -1     1717..2853     	 +	378	15899951	-	SP0002	L	DNA polymerase III, beta subunit	
3	 34.94        2864..3112     	 +	82	15899952	-	SP0003	-	hypothetical protein	
4	 40.23        3196..4311     	 +	371	15899953	-	SP0004	R	GTP-binding protein	
5	 33.68 -1     4382..4951     	 +	189	15899954	-	SP0005	J	peptidyl-tRNA hydrolase	
6	 35.01        4952..8461     	 +	1169	15899955	-	SP0006	L	transcription-repair coupling factor	
7	 34.83        8519..8785     	 +	88	15899956	-	SP0007	J	S4 domain protein	
8	 34.69        8778..9146     	 +	122	15899957	-	SP0008	-	hypothetical protein	
9	 30.89 -1     9151..9273     	 +	40	15899958	-	SP0009	-	hypothetical protein	
10	 32.78 -1     9266..10534    	 +	422	15899959	-	SP0010	-	conserved domain protein	
11	 33.80 -1    10531..11808    	 +	425	15899960	-	SP0011	D	MesJ/Ycf62 family protein	
12	 33.15 -1    11812..12354    	 +	180	15899961	-	SP0012	F	hypoxanthine-guanine phosphoribosyltransferase	
13	 39.10       12370..14328    	 +	652	15899962	-	SP0013	O	cell division protein FtsH	
14	 37.50       14450..14929    	 +	159	15899963	-	SP0014	-	transcriptional regulator ComX1	
15	 35.49       20404..20820    	 +	138	15899964	-	SP0015	-	IS630-Spn1, transposase Orf1	
16	 38.05       20929..21267    	 +	112	15899965	-	SP0016	L	IS630-Spn1, transposase Orf2	
17	 28.81 -2    22359..22601    	 +	80	15899966	-	SP0018	-	hypothetical protein	
18	 40.56       22832..24118    	 +	428	15899967	-	SP0019	F	adenylosuccinate synthetase	
19	 43.59       24319..24786    	 +	155	15899968	-	SP0020	F	cytidine/deoxycytidylate deaminase family protein	
20	 44.37       24973..25416    	 +	147	15899969	-	SP0021	F	deoxyuridine 5'triphosphate nucleotidohydrolase, putative	
21	 41.09       25418..25933    	 +	171	15899970	-	SP0022	G	conserved hypothetical protein	
22	 43.57       27381..27878    	 +	165	15899971	-	SP0024	P	conserved hypothetical protein	
23	 34.76       27903..28112    	 +	69	15899972	-	SP0025	-	hypothetical protein	
24	 39.10       28094..28717    	 +	207	15899973	-	SP0026	-	hypothetical protein	
25	 41.69       28862..29830    	 +	322	15899974	-	SP0027	F	ribose-phosphate pyrophosphokinase	
26	 44.87 +1    30372..30605    	 -	77	15899975	-	SP0029	-	hypothetical protein	
27	 43.73       30563..30889    	 -	108	15899976	-	SP0030	-	competence-induced protein Ccs16	
28	 39.05       30929..31243    	 -	104	15899977	-	SP0031	-	hypothetical protein	
29	 43.77       31535..34168    	 +	877	15899978	-	SP0032	L	DNA polymerase I	
30	 44.52 +1    34253..34690    	 +	145	15899979	-	SP0033	R	conserved hypothetical protein	
31	 46.59 +1    35009..36019    	 -	336	15899980	-	SP0034	S	membrane protein	
32	 46.07 +1    36168..37337    	 +	389	15899981	-	SP0035	E	aromatic amino acid aminotransferase	
33	 41.50       37334..38104    	 +	256	15899982	-	SP0036	L	conserved hypothetical protein	
34	 47.63 +1    38101..39093    	 +	330	15899983	-	SP0037	I	fatty acid/phospholipid synthesis protein PlsX	
35	 38.89       39099..39332    	 +	77	15899984	-	SP0038	-	acyl carrier protein, putative	
36	 26.19 -2    39716..39841    	 -	41	15899985	-	SP0040	-	hypothetical protein	
37	 47.19 +1    39871..40101    	 +	76	15899986	-	SP0041	-	bacteriocin BlpU	
38	 44.34       40816..42969    	 +	717	15899987	-	SP0042	Q	competence factor transporting ATP-binding/permease protein ComA	
39	 44.52 +1    42982..44331    	 +	449	15899988	-	SP0043	-	competence factor transport protein ComB	
40	 40.11       44501..45208    	 +	235	15899989	-	SP0044	F	phosphoribosylaminoimidazole-succinocarboxamide synthase	
41	 45.54 +1    45410..49135    	 +	1241	15899990	-	SP0045	F	phosphoribosylformylglycinamidine synthase, putative	
42	 46.50 +1    49228..50670    	 +	480	15899991	-	SP0046	F	amidophosphoribosyltransferase	
43	 47.02 +1    50889..51911    	 +	340	15899992	-	SP0047	F	phosphoribosylformylglycinamide cyclo-ligase	
44	 47.44 +1    51908..52453    	 +	181	15899993	-	SP0048	F	phosphoribosylglycinamide formyltransferase	
45	 29.22 -2    52537..53046    	 +	169	15899994	-	SP0049	-	vanZ protein, putative	
46	 47.03 +1    53071..54618    	 +	515	15899995	-	SP0050	F	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	
47	 47.74 +1    54740..56002    	 +	420	15899996	-	SP0051	F	phosphoribosylamine--glycine ligase	
48	 47.01 +1    56259..56375    	 +	38	15899997	-	SP0052	-	hypothetical protein	
49	 50.31 +2    56405..56893    	 +	162	15899998	-	SP0053	F	phosphoribosylaminoimidazole carboxylase, catalytic subunit	
50	 47.07 +1    56880..57971    	 +	363	15899999	-	SP0054	F	phosphoribosylaminoimidazole carboxylase, ATPase subunit	
51	 35.53       57981..58208    	 +	75	15900000	-	SP0055	-	hypothetical protein	
52	 46.42 +1    58271..59569    	 +	432	15900001	-	SP0056	F	adenylosuccinate lyase	
53	 42.22       59624..63562    	 -	1312	15900002	-	SP0057	G	beta-N-acetylhexosaminidase	
54	 37.52       63890..64606    	 -	238	15900003	-	SP0058	K	transcriptional regulator, GntR family	
55	 24.51 -2    64593..64694    	 +	33	15900004	-	SP0059	-	hypothetical protein	
56	 42.11       64955..66742    	 +	595	15900005	-	SP0060	G	beta-galactosidase	
57	 41.30       66739..67215    	 +	158	15900006	-	SP0061	G	PTS system, IIB component	
58	 44.26       67243..68148    	 +	301	15900007	-	SP0062	G	PTS system, IIC component	
59	 40.44       68135..68950    	 +	271	15900008	-	SP0063	G	PTS system, IID component	
60	 43.70       68957..69361    	 +	134	15900009	-	SP0064	G	PTS system, IIA component	
61	 41.73       69660..70826    	 +	388	15900010	-	SP0065	M	sugar isomerase domain protein AgaS	
62	 45.38 +1    70942..71979    	 +	345	15900011	-	SP0066	G	aldose 1-epimerase	
63	 40.23       72141..72401    	 +	86	15900012	-	SP0067	-	hypothetical protein	
64	 38.89       72456..72653    	 +	65	15900013	-	SP0068	-	hypothetical protein	
65	 42.14       72674..73309    	 +	211	15900014	-	SP0069	-	choline binding protein I	
66	 35.29       73353..73454    	 +	33	15900015	-	SP0070	-	hypothetical protein	
67	 36.89       73761..79331    	 +	1856	15900016	-	SP0071	-	immunoglobulin A1 protease	
68	 35.96       79434..79547    	 +	37	15900017	-	SP0072	-	hypothetical protein	
69	 44.80 +1    79687..80541    	 +	284	15900018	-	SP0073	R	conserved hypothetical protein	
70	 46.24 +1    80647..81204    	 +	185	15900019	-	SP0074	R	acetyltransferase, CysE/LacA/LpxA/NodL family	
71	 49.65 +2    81481..82185    	 +	234	15900020	-	SP0075	-	phosphorylase, Pnp/Udp family	
72	 35.48       82590..82682    	 -	30	15900021	-	SP0076	-	hypothetical protein	
73	 31.45 -1    82659..82817    	 +	52	15900022	-	SP0077	-	hypothetical protein	
74	 41.52       82798..84177    	 +	459	15900023	-	SP0078	P	potassium uptake protein, Trk family	
75	 43.69       84191..84856    	 +	221	15900024	-	SP0079	P	potassium uptake protein, Trk family	
76	 37.96       84877..84984    	 +	35	15900025	-	SP0080	-	hypothetical protein	
77	 42.93       86298..88871    	 +	857	15900026	-	SP0082	-	cell wall surface anchor family protein	
78	 41.63       89038..89736    	 +	232	15900027	-	SP0083	T	DNA-binding response regulator	
79	 44.06       89733..90785    	 +	350	15900028	-	SP0084	T	sensor histidine kinase	
80	 43.30       90980..91591    	 +	203	15900029	-	SP0085	J	ribosomal protein S4	
81	 29.79 -1    92025..92165    	 -	46	15900030	-	SP0087	-	hypothetical protein	
82	 42.22       92236..92505    	 +	89	15900031	-	SP0088	-	hypothetical protein	
83	 38.54       92585..92680    	 +	31	15900032	-	SP0089	-	hypothetical protein	
84	 40.83       92969..93928    	 +	319	15900033	-	SP0090	G	ABC transporter, permease protein	
85	 41.99       93942..94865    	 +	307	15900034	-	SP0091	G	ABC transporter, permease protein	
86	 38.41       95123..96598    	 +	491	15900035	-	SP0092	G	ABC transporter, substrate-binding protein	
87	 39.47       96628..96741    	 -	37	15900036	-	SP0093	-	hypothetical protein	
88	 33.33 -1    96713..96820    	 +	35	15900037	-	SP0094	-	hypothetical protein	
89	 44.07       96870..97856    	 +	328	15900038	-	SP0095	R	conserved hypothetical protein	
90	 41.23       98131..98991    	 +	286	15900039	-	SP0096	-	hypothetical protein	
91	 40.19       99169..100233   	 -	354	15900040	-	SP0097	-	conserved domain protein	
92	 41.01      100296..101207   	 -	303	15900041	-	SP0098	-	hypothetical protein	
93	 43.94      101200..101793   	 -	197	15900042	-	SP0099	-	hypothetical protein	
94	 42.20      101780..102106   	 -	108	15900043	-	SP0100	K	conserved hypothetical protein	
95	 44.82 +1   102245..103411   	 -	388	15900044	-	SP0101	P	transporter, putative	
96	 32.96 -1   103562..104626   	 +	354	15900045	-	SP0102	M	glycosyl transferase	
97	 42.14      104668..106518   	 +	616	15900046	-	SP0103	M	capsular polysaccharide biosynthesis protein, putative	
98	 42.97      106956..107588   	 -	210	15900047	-	SP0104	R	hydrolase, haloacid dehalogenase-like family	
99	 47.88 +1   107610..108482   	 -	290	15900048	-	SP0105	E	L-serine dehydratase, iron-sulfur-dependent, alpha subunit	
100	 41.67      108491..109162   	 -	223	15900049	-	SP0106	E	L-serine dehydratase, iron-sulfur-dependent, beta subunit	

 
 39.46 MEAN 
 
 5.03  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.