IslandPathversion 1.0

IslandPath Analysis: Streptococcus mutans UA159



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.10 STD DEV: 3.90
Streptococcus mutans UA159, complete genome - 0..2030921
1960 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.48         194..1552     	 +	452	24378533	dnaA	SMU.01	-	chromosomal replication initiator protein, DnaA	
2	 32.81 -1     1708..2844     	 +	378	24378534	dnaN	SMU.02	-	putative DNA polymerase III, beta subunit	
3	 39.58        3106..3297     	 +	63	24378535	-	SMU.05	-	conserved hypothetical protein	
4	 36.92        3461..4576     	 +	371	24378536	-	SMU.06	-	putative GTP-binding protein	
5	 30.70 -1     4663..5232     	 +	189	24378537	pth	SMU.07	-	putative peptidyl-tRNA hydrolase	
6	 31.81 -1     5234..8722     	 +	1162	24378538	trcF	SMU.08	-	putative transcription-repair coupling factor	
7	 30.40 -1     8852..9124     	 +	90	24378539	-	SMU.09	-	conserved hypothetical protein	
8	 27.42 -2     9111..9482     	 +	123	24378540	-	SMU.10	-	conserved hypothetical protein	
9	 24.17 -2     9482..9601     	 +	39	24378541	-	SMU.11	-	conserved hypothetical protein	
10	 31.69 -1     9632..10846    	 +	404	24378542	-	SMU.12	-	conserved hypothetical protein	
11	 30.42 -1    10843..12114    	 +	423	24378543	-	SMU.13	-	putative cell-cycle protein	
12	 33.70       12118..12660    	 +	180	24378544	hprT	SMU.14	-	putative hypoxanthine-guanine phosphoribosyltransferase	
13	 38.15       12682..14652    	 +	656	24378545	ftsH	SMU.15	-	putative cell division protein FtsH	
14	 33.12 -1    15140..16555    	 +	471	24378546	-	SMU.16	-	putative amino acid permease	
15	 38.41       16624..16761    	 +	45	24378547	-	SMU.18	-	hypothetical protein	
16	 31.73 -1    23655..24464    	 +	269	24378548	mreC	SMU.20	-	putative cell shape-determining protein MreC	
17	 25.44 -2    24466..24972    	 +	168	24378549	mreD	SMU.21	-	putative cell shape-determining protein MreD	
18	 41.44 +1    25082..26377    	 +	431	24378550	gbpB	SMU.22	-	putative secreted antigen GbpB/SagA; putative peptidoglycan hydrolase	
19	 36.33       26502..27470    	 +	322	24378551	prs	SMU.23	-	phosphoribosyl pyrophosphate synthetase (PRPP synthetase)	
20	 36.90       27559..28734    	 +	391	24378552	-	SMU.24	-	putative amino acid aminotransferase	
21	 32.01 -1    28724..29479    	 +	251	24378553	recO	SMU.25	-	putative DNA repair protein RecO	
22	 38.44       29687..30685    	 +	332	24378554	plsX	SMU.26	-	putative fatty acid/phospholipid synthesis protein	
23	 34.14       30687..30935    	 +	82	24378555	acpP	SMU.27	-	putative acyl carrier protein; AcpP; ACP	
24	 37.97       31163..31744    	 +	193	24378556	-	SMU.28	-	putative ATP-binding protein	
25	 34.60       31867..32574    	 +	235	24378557	-	SMU.29	-	putative phosphoribosylaminoimidazole-succinocarboxamide synthase SAICAR synthetase	
26	 43.64 +1    32584..36309    	 +	1241	24378558	purL	SMU.30	-	putative phosphoribosylformylglycinamidine synthase, (FGAM synthase)	
27	 30.60 -1    36331..36951    	 +	206	24378559	-	SMU.31	-	hypothetical protein	
28	 45.28 +2    36977..38416    	 +	479	24378560	purF	SMU.32	-	phosphoribosylpyrophosphate amidotransferase	
29	 32.98 -1    38633..38914    	 +	93	24378561	-	SMU.33	-	hypothetical protein	
30	 47.41 +2    38960..39982    	 +	340	24378562	purM	SMU.34	-	putative phosphoribosylformylglycinamide cyclo-ligase (AIRS); phosphoribosyl aminoimidazole synthetase	
31	 44.50 +1    39982..40536    	 +	184	24378563	purN	SMU.35	-	putative phosphoribosylglycinamide formyltransferase (GART)	
32	 37.43       40643..41350    	 +	235	24378564	-	SMU.36	-	conserved hypothetical protein	
33	 46.51 +2    41377..42939    	 +	520	24378565	purH	SMU.37	-	putative phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	
34	 37.75       43122..43664    	 -	180	24378566	-	SMU.38c	-	putative transcriptional regulator	
35	 35.10       43832..44341    	 +	169	24378567	-	SMU.39	-	conserved hypothetical protein	
36	 40.12       44518..44679    	 +	53	24378568	-	SMU.40	-	conserved hypothetical protein	
37	 34.31       44663..44764    	 +	33	24378569	-	SMU.41	-	hypothetical protein	
38	 33.22       44831..45709    	 +	292	24378570	-	SMU.42	-	conserved hypothetical protein	
39	 29.06 -2    45781..47160    	 +	459	24378571	-	SMU.43	-	putative site-specific DNA-methyltransferase restriction-modification protein	
40	 32.35 -1    47171..47782    	 +	203	24378572	-	SMU.44	-	conserved hypothetical protein; possible DNA mismatch repair protein	
41	 28.84 -2    47969..49570    	 +	533	24378573	-	SMU.45	-	hypothetical protein	
42	 27.20 -2    49572..50207    	 +	211	24378574	-	SMU.46	-	hypothetical protein	
43	 27.59 -2    50207..50815    	 +	202	24378575	-	SMU.47	-	hypothetical protein	
44	 51.11 +2    51039..52298    	 +	419	24378576	purD	SMU.48	-	putative phosphoribosylamine-glycine ligase; phosphoribosyl glycinamide synthetase (GARS)	
45	 39.93       52358..53539    	 +	393	24378577	-	SMU.49	-	hypothetical protein	
46	 52.15 +2    53862..54350    	 +	162	24378578	purE	SMU.50	-	putative phosphoribosylaminoimidazole carboxylase, catalytic subunit	
47	 51.37 +2    54337..55428    	 +	363	24378579	purK	SMU.51	-	putative phosphoribosylaminoimidazole carboxylase, ATPase subunit	
48	 31.23 -1    55428..56093    	 +	221	24378580	-	SMU.52	-	conserved hypothetical protein	
49	 42.59 +1    56109..56324    	 +	71	24378581	-	SMU.53	-	conserved hypothetical protein	
50	 46.32 +2    56331..57023    	 +	230	24378582	-	SMU.54	-	putative amino acid recemase	
51	 37.12       57125..57388    	 +	87	24378583	-	SMU.55	-	hypothetical protein	
52	 34.11       57408..57536    	 +	42	24378584	-	SMU.56	-	conserved hypothetical protein	
53	 28.24 -2    57639..58934    	 +	431	24378585	-	SMU.58	-	hypothetical protein	
54	 49.04 +2    59244..60542    	 +	432	24378586	purB	SMU.59	-	adenylosuccinate lyase	
55	 41.48 +1    60562..61248    	 +	228	24378587	-	SMU.60	-	DNA alkylation repair enzyme	
56	 33.22       61631..62545    	 +	304	24378588	-	SMU.61	-	putative transcriptional regulator	
57	 39.63       63079..64920    	 -	613	24378589	-	SMU.63c	-	conserved hypothetical protein	
58	 41.55 +1    65217..66251    	 +	344	24378590	ruvB	SMU.64	-	Holliday junction DNA helicase RuvB	
59	 38.97       66289..66714    	 +	141	24378591	-	SMU.65	-	putative protein tyrosine-phosphatase	
60	 36.20       66779..67162    	 +	127	24378592	-	SMU.66	-	conserved hypothetical protein	
61	 37.74       67159..68949    	 +	596	24378593	-	SMU.67	-	putative acyltransferase	
62	 41.03 +1    69215..69292    	 +	25	24378594	-	SMU.68	-	hypothetical protein	
63	 38.92       69631..71115    	 +	494	24378595	thrC	SMU.70	-	putative threonine synthase	
64	 38.00       71523..72872    	 +	449	24378596	-	SMU.71	-	putative cation efflux pump (multidrug resistance protein)	
65	 36.56       73219..73497    	 +	92	24378597	-	SMU.72	-	conserved hypothetical protein	
66	 43.65 +1    73517..74854    	 +	445	24378598	-	SMU.73	-	conserved hypothetical protein	
67	 40.51       74927..75637    	 +	236	24378599	-	SMU.74	-	conserved hypothetical protein	
68	 38.13       75621..76370    	 +	249	24378600	-	SMU.75	-	putative D-alanyl-D-alanine carboxypeptidase	
69	 36.73       76374..76961    	 +	195	24378601	-	SMU.76	-	putative N-acetyl-muramidase	
70	 39.40       77576..81847    	 +	1423	24378602	fruA	SMU.78	-	fructan hydrolase; exo-beta-D-fructosidase; fructanase, FruA	
71	 36.92       81918..83477    	 +	519	24378603	fruB	SMU.79	-	fructan hydrolase; exo-beta-D-fructosidase; FruB	
72	 36.81       83652..84686    	 +	344	24378604	hrcA	SMU.80	-	transcriptional regulator; repressor (HrcA) of class I heat shock genes	
73	 40.74       84729..85268    	 +	179	24378605	grpE	SMU.81	-	heat shock protein GrpE (HSP-70 cofactor)	
74	 40.62       85642..87480    	 +	612	24378606	dnaK	SMU.82	-	heat shock protein, DnaK (HSP-70)	
75	 41.89 +1    88008..89141    	 +	377	24378607	dnaJ	SMU.83	-	heat shock protein DnaJ (HSP-40)	
76	 40.93       89443..90192    	 +	249	24378608	truA	SMU.84	-	putative tRNA pseudouridine synthase A	
77	 38.41       90182..90949    	 +	255	24378609	thiD	SMU.85	-	putative phosphomethylpyrimidine kinase	
78	 37.20       90936..91400    	 +	154	24378610	-	SMU.86	-	conserved hypothetical protein	
79	 42.73 +1    91445..92008    	 +	187	24378611	-	SMU.87	-	conserved hypothetical protein	
80	 36.83       92179..93036    	 -	285	24378612	-	SMU.88c	-	conserved hypothetical protein; possible mechanosensitive ion channel	
81	 37.04       93254..94063    	 -	269	24378613	-	SMU.89c	-	putative nitrite transporter	
82	 38.24       94301..95584    	 +	427	24378614	ropA	SMU.91	-	peptidyl-prolyl isomerase RopA (trigger factor)	
83	 39.13       95724..95861    	 -	45	24378615	-	SMU.92c	-	hypothetical protein; putative transposase fragment	
84	 43.24 +1    95980..96090    	 -	36	24378616	-	SMU.93c	-	hypothetical protein; putative transposase fragment	
85	 38.60       96291..96461    	 -	56	24378617	-	SMU.94c	-	hypothetical protein; putative transposase fragment	
86	 36.81       97182..97670    	 +	162	24378618	rpoE	SMU.96	-	putative DNA-directed RNA polymerase, delta subunit	
87	 39.11       97804..99414    	 +	536	24378619	pyrG	SMU.97	-	CTP synthetase (UTP-ammonia lyase)	
88	 40.36      100574..101455   	 +	293	24378620	fbaA	SMU.99	-	fructose-1,6-biphosphate aldolase	
89	 32.11 -1   101780..102271   	 +	163	24378621	-	SMU.100	-	putative sorbose PTS system, IIB component	
90	 33.96      102284..103081   	 +	265	24378622	-	SMU.101	-	putative sorbose PTS system, IIC component	
91	 34.55      103071..103892   	 +	273	24378623	-	SMU.102	-	putative PTS system, IID component	
92	 33.57      103889..104305   	 +	138	24378624	-	SMU.103	-	putative PTS system, IIA component	
93	 34.65      104305..106500   	 +	731	24378625	-	SMU.104	-	putative alpha-glucosidase; glycosyl hydrolase	
94	 34.23      106501..107499   	 +	332	24378626	-	SMU.105	-	putative transcriptional regulator; repressor of sugar transport operon	
95	 45.57 +2   107734..107970   	 -	78	24378627	-	SMU.106c	-	putative transposase fragment	
96	 21.64 -2   109108..109278   	 +	56	24378628	-	SMU.107	-	hypothetical protein	
97	 28.99 -2   109280..109417   	 +	45	24378629	-	SMU.108	-	hypothetical protein	
98	 32.43 -1   109582..110682   	 +	366	24378630	-	SMU.109	-	conserved hypothetical protein; possible permease (efflux protein)	
99	 29.62 -1   110824..111684   	 -	286	24378631	mutR	SMU.110	-	putative transcriptional regulator MutR	
100	 34.80      111945..112694   	 -	249	24378632	-	SMU.112c	-	putative transcriptional regulator	

 
 37.10 MEAN 
 
 3.90  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.