IslandPathversion 1.0

IslandPath Analysis: Streptomyces coelicolor A3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.07 STD DEV: 3.62
Streptomyces coelicolor A3(2), complete genome - 0..8667507
7512 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 71.09         446..1123     	 +	225	21218583	SCEND.02c	SCO0001	-	hypothetical protein	
2	 70.73        1252..3813     	 +	853	21218584	SC8E7.42c	SCO0002	-	hypothetical protein	
3	 68.49        3869..6220     	 +	783	21218585	SC8E7.41c	SCO0003	-	putative DNA-binding protein.	
4	 67.51 -1     6979..7175     	 +	64	21218586	SC1C9.01	SCO0004	-	hypothetical protein (fragment)	
5	 70.82        7189..9309     	 +	706	21218587	SC1C9.02	SCO0005	-	putative transposase	
6	 72.28        9306..9976     	 +	222	21218588	SC1C9.03	SCO0006	-	putative ATP/GTP-binding protein (fragment)	
7	 74.05       10554..11000    	 -	148	21218589	SCJ30.02c	SCO0007	-	hypothetical protein	
8	 72.36       11010..11360    	 -	116	21218590	SCJ30.03c	SCO0008	-	hypothetical protein	
9	 66.07 -1    11617..11952    	 -	111	21218591	SCJ30.04c	SCO0009	-	hypothetical protein	
10	 68.96       12366..13457    	 +	363	21218592	SCJ30.05	SCO0010	-	hypothetical protein (putative secreted protein)	
11	 70.86       13214..14023    	 -	269	21218593	SCJ30.06c	SCO0011	-	hypothetical protein	
12	 72.51       14044..14454    	 -	136	21218594	SCJ30.07c	SCO0012	-	hypothetical protein	
13	 73.20       14739..15029    	 -	96	21218595	SCJ30.09c	SCO0013	-	conserved hypothetical protein	
14	 69.18       15317..15595    	 -	92	21218596	SCJ30.10c	SCO0014	-	conserved hypothetical protein	
15	 72.83       16070..17302    	 -	410	21218597	SCJ30.11c	SCO0015	-	putative Na+/H+ antiporter	
16	 78.92 +1    17715..17918    	 +	67	21218598	SCJ30.12	SCO0016	-	hypothetical protein	
17	 74.20       17919..18263    	 +	114	21218599	SCJ30.13	SCO0017	-	hypothetical protein	
18	 68.74       18485..19351    	 -	288	21218600	SCJ30.14c	SCO0018	-	hypothetical protein	
19	 63.14 -2    19517..19771    	 -	84	21218601	SCJ30.15c	SCO0019	-	hypothetical protein	
20	 63.47 -2    21617..22210    	 +	197	21218602	SCJ4.02	SCO0021	-	hypothetical protein	
21	 65.72 -1    22156..22761    	 -	140	21218603	SCJ4.03c	SCO0022	-	putative IS element ATP-binding protein	
22	 70.32       22843..23061    	 +	72	21218604	SCJ4.06	SCO0025	-	putative IS element ATP-binding protein	
23	 67.25 -1    23316..23831    	 +	171	21218605	SCJ4.07	SCO0026	-	putative secreted protein	
24	 76.15 +1    23977..24345    	 -	122	21218606	SCJ4.08c	SCO0027	-	hypothetical protein	
25	 76.39 +1    24378..24521    	 -	47	21218607	SCJ4.09c	SCO0028	-	hypothetical protein	
26	 76.00 +1    24644..24943    	 +	99	21218608	SCJ4.10	SCO0029	-	hypothetical protein	
27	 69.89       25251..25871    	 +	206	21218609	SCJ4.11	SCO0030	-	hypothetical protein SCJ4.11	
28	 69.80       25843..26385    	 -	180	21218610	SCJ4.12c	SCO0031	-	hypothetical protein	
29	 61.67 -2    26393..26452    	 -	19	21218611	SCJ4.13c	SCO0032	-	hypothetical protein SCJ4.13c	
30	 69.69       26527..28773    	 -	748	21218612	SCJ4.14c	SCO0033	-	putative secreted neuraminidase	
31	 66.67 -1    29040..29519    	 +	159	21218613	SCJ4.15	SCO0034	-	hypothetical protein	
32	 61.11 -2    29605..30054    	 -	149	21218614	SCJ4.16c	SCO0035	-	hypothetical protein	
33	 66.67 -1    30116..30355    	 -	79	21218615	SCJ4.17c	SCO0036	-	hypothetical protein	
34	 71.18       30379..31131    	 -	250	21218616	SCJ4.18c	SCO0037	-	putative sigma factor	
35	 67.44 -1    31146..31274    	 -	42	21218617	SCJ4.19c	SCO0038	-	putative sigma factor	
36	 74.27       31520..32137    	 +	205	21218618	SCJ4.20	SCO0039	-	hypothetical protein SCJ4.20	
37	 72.30       32134..33357    	 +	407	21218619	SCJ4.21	SCO0040	-	putative glycosyl transferase	
38	 74.28       33360..33845    	 +	161	21218620	SCJ4.22	SCO0041	-	putative integral membrane protein	
39	 72.22       33842..34777    	 +	311	21218621	SCJ4.23	SCO0042	-	hypothetical protein	
40	 68.45 -1    35179..35907    	 -	242	21218622	SCJ4.24c	SCO0043	-	conserved hypothetical protein	
41	 69.66       36006..36674    	 -	222	21218623	SCJ4.25c	SCO0044	-	putative oxidoreductase	
42	 56.59 -2    36689..36817    	 -	42	21218624	SCJ4.26c	SCO0045	-	hypothetical protein	
43	 69.98       36816..37478    	 +	220	21218625	SCJ4.27	SCO0046	-	putative hydrolase	
44	 71.69       37614..38768    	 -	384	21218626	SCJ4.28c	SCO0047	-	putative transcriptional regulator	
45	 67.19 -1    39107..39490    	 -	127	21218627	SCJ4.29c	SCO0048	-	hypothetical protein	
46	 64.20 -2    39489..39812    	 +	107	21218628	SCJ4.30	SCO0049	-	hypothetical protein	
47	 63.99 -2    39877..40212    	 +	111	21218629	SCJ4.31	SCO0050	-	hypothetical protein	
48	 66.27 -1    42171..43682    	 -	503	21218630	SCJ4.36c	SCO0055	-	putative membrane-associated oxidoreductase	
49	 64.44 -2    43768..43857    	 +	29	21218631	SCJ4.37	SCO0056	-	hypothetical protein	
50	 75.89 +1    43950..44090    	 +	46	21218632	SCJ4.38	SCO0057	-	hypothetical protein	
51	 70.82       44253..44975    	 +	240	21218633	SCJ4.39	SCO0058	-	hypothetical protein	
52	 72.00       45267..46073    	 +	268	21218634	SCJ4.40	SCO0059	-	putative zinc-binding oxidoreductase	
53	 76.09 +1    46064..46201    	 +	45	21218635	SCJ4.41	SCO0060	-	hypothetical protein	
54	 69.20       46430..47734    	 -	434	21218636	SCJ4.42c	SCO0061	-	conserved hypothetical protein	
55	 70.47       47789..48892    	 -	367	21218637	SCJ4.43c	SCO0062	-	putative LacI family transcriptional regulator	
56	 74.79       48889..49824    	 -	311	21218638	SCJ4.44c	SCO0063	-	putative glucokinase	
57	 72.02       49821..51539    	 -	572	21218639	SCJ4.45c	SCO0064	-	hypothetical protein	
58	 70.02       51831..53144    	 +	437	21218640	SCJ4.46	SCO0065	-	putative extracellular binding protein	
59	 69.48       53141..54100    	 +	319	21218641	SCJ4.47	SCO0066	-	putative integral membrane permease	
60	 66.42 -1    54097..54918    	 +	273	21218642	SCJ4.48	SCO0067	-	putative integral membrane permease	
61	 72.31       54968..56173    	 +	401	21218643	SCJ4.49	SCO0068	-	putative hydrolase (putative secreted protein)	
62	 72.65       56225..59383    	 +	1052	21218644	SCJ4.50	SCO0069	-	hypothetical protein	
63	 71.05       59558..60241    	 +	227	21218645	SCJ4.51	SCO0070	-	hypothetical protein	
64	 69.08       60069..60275    	 -	68	21218646	SCJ4.52c	SCO0071	-	hypothetical protein	
65	 69.78       64605..64925    	 +	106	21218647	SCJ11.02	SCO0073	-	hypothetical protein	
66	 71.72       64994..65092    	 +	32	21218648	SCJ11.03	SCO0074	-	hypothetical protein	
67	 71.09       65092..65679    	 +	195	21218649	SCJ11.04	SCO0075	-	hypothetical protein	
68	 62.83 -2    66688..67911    	 -	407	21218650	SCJ11.08c	SCO0079	-	putative integral membrane transport protein	
69	 64.53 -2    68372..68887    	 +	171	21218651	SCJ11.09	SCO0080	-	hypothetical protein	
70	 70.44       69799..70647    	 +	282	21218652	SCJ11.12	SCO0083	-	putative transposase	
71	 63.62 -2    70777..71235    	 +	152	21218653	SCJ11.13	SCO0084	-	conserved hypothetical protein	
72	 71.95       71648..72139    	 -	163	21218654	SCJ11.14c	SCO0085	-	hypothetical protein	
73	 69.86       72159..73097    	 -	312	21218655	SCJ11.15c	SCO0086	-	putative ribosylglycohydrolase (putative secreted protein)	
74	 68.38 -1    73784..74833    	 -	349	21218656	SCJ11.16c	SCO0087	-	putative secreted protein	
75	 68.85       74917..75876    	 -	319	21218657	SCJ11.17c	SCO0088	-	putative secreted beta-lactamase	
76	 70.13       75856..76893    	 +	345	21218658	SCJ11.18	SCO0089	-	putative transcriptional regulator	
77	 62.38 -2    76895..77314    	 -	139	21218659	SCJ11.19c	SCO0090	-	putative transposase	
78	 71.26       77315..78271    	 +	318	21218660	SCJ11.20	SCO0091	-	putative insertion element IS1652 transposase	
79	 70.56       78983..79702    	 -	239	21218661	SCJ11.24c	SCO0095	-	hypothetical protein SCJ11.24c	
80	 69.84       79839..80690    	 -	283	21218662	SCJ11.25c	SCO0096	-	putative noncomposite transposon transposase	
81	 65.11 -1    80845..81165    	 -	106	21218663	SCJ11.26c	SCO0097	-	putative integral membrane protein	
82	 63.10 -2    81602..82441    	 -	279	21218664	SCJ11.27c	SCO0098	-	putative transposase	
83	 67.61 -1    83516..84259    	 -	247	21218665	SCJ11.30c	SCO0101	-	conserved hypothetical protein	
84	 68.90       84893..85339    	 +	148	21218666	SCJ11.31	SCO0102	-	hypothetical protein	
85	 68.27 -1    85336..86643    	 +	435	21218667	SCJ11.32	SCO0103	-	putative flavohemoprotein	
86	 68.15 -1    86640..87311    	 +	223	21218668	SCJ11.33	SCO0104	-	putative hydrolase	
87	 64.74 -2    87907..88632    	 -	241	21218669	SCJ11.34c	SCO0105	-	endo-1,4-beta-xylanase (putative secreted protein)	
88	 70.48       89073..89465    	 +	130	21218670	SCJ11.35	SCO0106	-	putative insertion element transposase	
89	 63.98 -2    89486..90043    	 -	185	21218671	SCJ11.36c	SCO0107	-	putative aminoglycoside nucleotidyltransferase	
90	 62.00 -2    90242..90391    	 +	49	21218672	SCJ11.37	SCO0108	-	hypothetical protein	
91	 68.79       90395..90865    	 -	156	21218673	SCJ11.38c	SCO0109	-	hypothetical protein	
92	 70.00       90951..91790    	 -	279	21218674	SCJ11.39c	SCO0110	-	putative DNA-binding protein	
93	 69.06       91977..92729    	 +	250	21218675	SCJ11.40	SCO0111	-	putative oxidoreductase	
94	 69.87       92773..92928    	 -	51	21218676	SCJ11.41c	SCO0112	-	hypothetical protein	
95	 71.60       94306..94872    	 -	188	21218677	SCJ11.45c	SCO0116	-	putative tetR-family transcriptional regulator	
96	 70.13       94989..95681    	 +	230	21218678	SCJ11.46	SCO0117	-	putative oxidoreductase	
97	 71.18       95989..97518    	 +	509	21218679	SCJ11.47	SCO0118	-	putative xylosidase/arabinosidase	
98	 68.01 -1    97760..98281    	 -	173	21218680	SCJ11.48c	SCO0119	-	putative small secreted protein	
99	 67.97 -1    99335..99949    	 -	204	21218681	SCJ21.02c	SCO0121	-	ABC transport system ATP-binding protein	
100	 71.97      100190..101566   	 +	458	21218682	SCJ21.03	SCO0122	-	putative flavin-containing monooxygenase (putative secreted protein)	

 
 72.07 MEAN 
 
 3.62  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.