IslandPath Analysis: Streptomyces avermitilis MA-4680



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.71   STD DEV: 3.30
Streptomyces avermitilis MA-4680, complete genome - 0..9025608
7575 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.51 -1     1380..1811     	 -	143	29826541	-	SAV1	-	hypothetical protein	
2	 68.80        2466..2699     	 +	77	29826542	-	SAV2	-	hypothetical protein	
3	 70.33        2765..3310     	 +	181	29826543	-	SAV3	-	putative endonuclease VII	
4	 70.81        3433..3939     	 -	168	29826544	-	SAV4	-	hypothetical protein	
5	 68.48        3994..4932     	 +	312	29826545	-	SAV5	-	hypothetical protein	
6	 70.59        4936..7563     	 +	875	29826546	-	SAV6	-	putative helicase	
7	 69.03        7554..9626     	 +	690	29826547	-	SAV7	-	putative transposase	
8	 68.93        9886..10635    	 -	249	29826548	-	SAV8	-	hypothetical protein	
9	 70.11       10632..10805    	 -	57	29826549	-	SAV9	-	hypothetical protein	
10	 66.17 -1    11101..13497    	 -	798	29826550	-	SAV10	-	hypothetical protein	
11	 67.60       13376..15523    	 -	715	29826551	-	SAV11	-	hypothetical protein	
12	 67.04 -1    15815..17701    	 -	628	29826552	-	SAV12	-	hypothetical protein	
13	 68.68       17828..18922    	 +	364	29826553	-	SAV13	-	hypothetical protein	
14	 61.27 -2    19446..20279    	 +	277	29826554	-	SAV14	-	putative membrane protein	
15	 71.68       21562..22080    	 +	172	29826555	-	SAV15	-	hypothetical protein	
16	 69.13       22243..22770    	 +	175	29826556	-	SAV16	-	hypothetical protein	
17	 67.27 -1    23457..23621    	 +	54	29826557	-	SAV17	-	hypothetical protein	
18	 68.81       23675..24559    	 +	294	29826558	-	SAV18	-	putative IS1650 family transposase	
19	 62.80 -2    24570..24983    	 -	137	29826559	-	SAV19	-	hypothetical protein	
20	 62.10 -2    25166..25690    	 -	174	29826560	-	SAV20	-	hypothetical protein	
21	 67.95       25699..29451    	 -	1250	29826561	-	SAV21	-	putative Rhs protein	
22	 69.46       29508..30080    	 -	190	29826562	-	SAV22	-	hypothetical protein	
23	 67.01 -1    30107..30394    	 -	95	29826563	-	SAV23	-	hypothetical protein	
24	 68.49       30394..31323    	 -	309	29826564	-	SAV24	-	hypothetical protein	
25	 66.39 -1    32197..32559    	 -	120	29826565	-	SAV25	-	hypothetical protein	
26	 64.40 -1    32552..33124    	 -	190	29826566	sig1	SAV26	-	putative RNA polymerase ECF-subfamily sigma factor	
27	 68.04       33121..33411    	 -	96	29826567	-	SAV27	-	hypothetical protein	
28	 72.02       34056..35792    	 +	578	29826568	-	SAV28	-	putative two-component system sensor kinase	
29	 70.76       37315..37656    	 +	113	29826569	-	SAV29	-	putative transcriptional regulator PadR-like family	
30	 70.53       37653..38609    	 +	318	29826570	-	SAV30	-	hypothetical protein	
31	 70.16       38623..39624    	 +	333	29826571	-	SAV31	-	putative prepilin peptidase-like protein	
32	 68.66       41010..41612    	 +	200	29826572	-	SAV32	-	hypothetical protein	
33	 63.04 -2    41665..41967    	 -	100	29826573	-	SAV33	-	hypothetical protein	
34	 65.88 -1    42010..44046    	 +	678	29826574	-	SAV34	-	hypothetical protein	
35	 68.31       44107..44958    	 -	283	29826575	-	SAV35	-	hypothetical protein	
36	 67.40 -1    45160..45432    	 -	90	29826576	-	SAV36	-	hypothetical protein	
37	 68.48       45819..47141    	 -	440	29826577	-	SAV37	-	hypothetical protein	
38	 68.47       47239..48180    	 -	313	29826578	-	SAV38	-	putative hydrolase	
39	 72.51       49166..49456    	 +	96	29826579	-	SAV39	-	putative terminal protein Tpg homolog	
40	 68.83       49694..50434    	 -	246	29826580	-	SAV40	-	hypothetical protein	
41	 62.73 -2    50521..50901    	 -	126	29826581	-	SAV41	-	hypothetical protein	
42	 74.14 +1    51232..52623    	 +	463	29826582	-	SAV42	-	hypothetical protein	
43	 73.54       53113..53505    	 +	130	29826583	-	SAV43	-	putative transposase	
44	 68.46       54215..55330    	 +	371	29826584	-	SAV44	-	putative unsaturated glucuronyl hydrolase	
45	 69.07       55687..56061    	 -	124	29826585	-	SAV45	-	putative transposase	
46	 68.21       56052..56441    	 -	129	29826586	-	SAV46	-	putative transposase	
47	 68.01       56620..57810    	 +	396	29826587	-	SAV47	-	putative IS605 family transposase	
48	 68.95       58168..58824    	 -	218	29826588	-	SAV48	-	hypothetical protein	
49	 67.01 -1    58919..59212    	 +	97	29826589	-	SAV49	-	hypothetical protein	
50	 74.65 +1    59260..61488    	 -	742	29826590	-	SAV50	-	hypothetical protein	
51	 67.06 -1    62242..62751    	 -	169	29826591	-	SAV51	-	putative acetyltransferase, GNAT family	
52	 63.49 -2    62965..63342    	 -	125	29826592	-	SAV52	-	hypothetical protein	
53	 66.78 -1    63529..64401    	 +	290	29826593	-	SAV53	-	putative transcriptional regulatory protein	
54	 78.70 +2    64481..64588    	 -	35	29826594	-	SAV54	-	hypothetical protein	
55	 66.43 -1    64632..65045    	 -	137	29826595	-	SAV55	-	hypothetical protein	
56	 70.49       65216..65398    	 -	60	29826596	-	SAV56	-	hypothetical protein	
57	 70.17       65536..66591    	 -	351	29826597	-	SAV57	-	hypothetical protein	
58	 70.03       66803..67546    	 -	247	29826598	-	SAV58	-	hypothetical protein	
59	 67.42       69136..69402    	 +	88	29826599	-	SAV59	-	hypothetical protein	
60	 67.44       70102..70617    	 -	171	29826600	-	SAV60	-	hypothetical protein	
61	 66.50 -1    70718..71920    	 -	400	29826601	-	SAV61	-	putative IS605 family transposase	
62	 68.90       72189..72680    	 +	163	29826602	-	SAV62	-	putative transmembrane transport protein	
63	 69.82       72680..72901    	 +	73	29826603	-	SAV63	-	putative transcriptional regulatory protein	
64	 66.82 -1    73063..73698    	 +	211	29826604	-	SAV64	-	hypothetical protein	
65	 72.10       74098..74520    	 +	140	29826605	-	SAV65	-	hypothetical protein	
66	 71.13       74429..74899    	 -	156	29826606	-	SAV66	-	putative transposase	
67	 69.45       75600..76676    	 +	358	29826607	-	SAV67	-	putative regulatory protein	
68	 74.60 +1    77069..78430    	 +	453	29826608	-	SAV68	-	hypothetical protein	
69	 69.17       78733..78972    	 +	79	29826609	-	SAV69	-	hypothetical protein	
70	 73.26       79005..79262    	 -	85	29826610	-	SAV70	-	hypothetical protein	
71	 66.43 -1    79425..79850    	 +	141	29826611	-	SAV71	-	hypothetical protein	
72	 75.00 +1    80560..82215    	 -	551	29826612	-	SAV72	-	putative two-component system sensor kinase	
73	 72.42       82208..82954    	 -	248	29826613	-	SAV73	-	putative two-component system response regulator	
74	 74.25 +1    83059..84600    	 +	513	29826614	-	SAV74	-	hypothetical protein	
75	 67.18 -1    85042..85431    	 +	129	29826615	-	SAV75	-	hypothetical protein	
76	 72.02       86073..87080    	 +	335	29826616	tpc1	SAV76	-	putative terpene cyclase	
77	 71.21       87168..87629    	 -	153	29826617	-	SAV77	-	hypothetical protein	
78	 64.17 -1    87716..88276    	 -	186	29826618	-	SAV78	-	putative transposase	
79	 66.35 -1    88693..89631    	 -	312	29826619	-	SAV79	-	putative MerR-family transcriptional regulator	
80	 72.62       89844..90179    	 -	111	29826620	-	SAV80	-	putative rRNA methyltransferase	
81	 70.82       90422..91192    	 -	256	29826621	-	SAV81	-	putative hydrolase	
82	 70.79       91736..92317    	 -	193	29826622	-	SAV82	-	putative transcriptional regulator	
83	 76.71 +1    92523..92741    	 +	72	29826623	-	SAV83	-	hypothetical protein	
84	 71.89       92939..94183    	 -	414	29826624	-	SAV84	-	hypothetical protein	
85	 75.39 +1    94242..95009    	 +	255	29826625	-	SAV85	-	putative MerR-family transcriptional regulator	
86	 72.79       95110..96105    	 -	331	29826626	-	SAV86	-	putative erythropoiesis-stimulating protein	
87	 72.97       96235..96567    	 +	110	29826627	-	SAV87	-	hypothetical protein	
88	 70.14       99274..100050   	 -	258	29826628	-	SAV88	-	hypothetical protein	
89	 72.96      100279..100866   	 -	195	29826629	-	SAV89	-	hypothetical protein	
90	 71.57      100955..101362   	 +	135	29826630	-	SAV90	-	putative hydrolase	
91	 73.15      101447..101893   	 +	148	29826631	-	SAV91	-	hypothetical protein	
92	 74.80 +1   102549..103163   	 +	204	29826632	-	SAV92	-	putative lipoprotein	
93	 69.11      103255..103746   	 +	163	29826633	sig2	SAV93	-	putative RNA polymerase ECF-subfamily sigma factor	
94	 78.12 +2   103709..104197   	 +	162	29826634	-	SAV94	-	hypothetical protein	
95	 67.45      104696..106234   	 +	512	29826635	-	SAV95	-	hypothetical protein	
96	 74.78 +1   106628..107440   	 +	270	29826636	-	SAV96	-	hypothetical protein	
97	 76.54 +1   107491..108027   	 -	178	29826637	-	SAV97	-	hypothetical protein	
98	 68.52      108349..110238   	 -	629	29826638	-	SAV98	-	hypothetical protein	
99	 73.69      110830..113364   	 +	844	29826639	-	SAV99	-	putative integral membrane protein	
100	 73.11      113361..114866   	 +	501	29826640	-	SAV100	-	putative polyketide synthase	

 
 70.71 MEAN 
 
 3.30  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.