IslandPath Analysis: Streptococcus agalactiae NEM316



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.67   STD DEV: 3.51
Streptococcus agalactiae NEM316, complete genome - 0..2211485
2094 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.10         176..1537     	 +	453	25010076	dnaA	gbs0001	-	replication initiation protein DnaA	
2	 33.60        1692..2828     	 +	378	25010077	dnaN	gbs0002	-	beta subunit of DNA polymerase III	
3	 31.18 -1     2898..3779     	 +	293	25010078	-	gbs0003	-	Unknown	
4	 33.33        3789..3986     	 +	65	25010079	-	gbs0004	-	Unknown	
5	 25.00 -2     4188..4391     	 +	67	25010080	-	gbs0005	-	Hypothetical protein	
6	 36.29        4551..5666     	 +	371	25010081	-	gbs0006	-	Unknown	
7	 30.38 -1     5750..6325     	 +	191	25010082	-	gbs0007	-	Unknown	
8	 33.68        6322..9819     	 +	1165	25010083	-	gbs0008	-	Unknown	
9	 35.53       10110..10382    	 +	90	25010084	-	gbs0009	-	Unknown	
10	 31.99 -1    10369..10740    	 +	123	25010085	-	gbs0010	-	Unknown	
11	 29.63 -1    10743..10877    	 +	44	25010086	-	gbs0011	-	Hypothetical protein	
12	 32.01 -1    10877..12163    	 +	428	25010087	-	gbs0012	-	unknown	
13	 31.84 -1    12165..13439    	 +	424	25010088	-	gbs0013	-	Unknown	
14	 32.23       13444..13986    	 +	180	25010089	-	gbs0014	-	Unknown	
15	 37.89       14009..15985    	 +	658	25010090	ftsH	gbs0015	-	cell division protein FtsH	
16	 40.85 +1    28975..30318    	 +	447	25010091	pcsB	gbs0016	-	PcsB protein	
17	 37.87       30442..31410    	 +	322	25010092	-	gbs0017	-	unknown	
18	 35.03       31518..32693    	 +	391	25010093	-	gbs0018	-	Unknown	
19	 30.31 -1    32683..33444    	 +	253	25010094	-	gbs0019	-	Unknown	
20	 29.81 -1    33507..34385    	 +	292	25010095	-	gbs0020	-	Unknown	
21	 37.26       34463..35455    	 +	330	25010096	-	gbs0021	-	Unknown	
22	 35.83       35466..35705    	 +	79	25010097	-	gbs0022	-	Unknown	
23	 36.45       35829..36533    	 +	234	25010098	-	gbs0023	-	Unknown	
24	 45.06 +2    36656..40381    	 +	1241	25010099	-	gbs0024	-	Unknown	
25	 38.76       40615..42069    	 +	484	25010100	-	gbs0025	-	Unknown	
26	 44.28 +2    42097..43119    	 +	340	25010101	-	gbs0026	-	Unknown	
27	 46.81 +2    43287..43835    	 +	182	25010102	-	gbs0027	-	Unknown	
28	 35.59       43858..44610    	 +	250	25010103	-	gbs0028	-	Unknown	
29	 47.09 +2    44630..46177    	 +	515	25010104	-	gbs0029	-	unknown	
30	 40.89 +1    46370..47269    	 +	299	25010105	-	gbs0030	-	Unknown	
31	 40.77 +1    47416..48720    	 +	434	25010106	-	gbs0031	-	unknown	
32	 38.63       48967..49665    	 +	232	25010107	-	gbs0032	-	Unknown	
33	 35.00       49712..51028    	 +	438	25010108	-	gbs0033	-	Unknown	
34	 34.35       51116..52003    	 +	295	25010109	-	gbs0034	-	Unknown	
35	 35.98       52013..52843    	 +	276	25010110	-	gbs0035	-	Unknown	
36	 31.76 -1    52856..53299    	 +	147	25010111	-	gbs0036	-	Unknown	
37	 31.52 -1    53319..53981    	 +	220	25010112	-	gbs0037	-	Unknown	
38	 34.86       53978..54895    	 +	305	25010113	-	gbs0038	-	Unknown	
39	 37.98       54912..55793    	 +	293	25010114	-	gbs0039	-	Unknown	
40	 35.69       55801..56778    	 +	325	25010115	-	gbs0040	-	Unknown	
41	 35.32       56801..57604    	 -	267	25010116	-	gbs0041	-	Unknown	
42	 49.41 +2    57888..59150    	 +	420	25010117	-	gbs0042	-	Unknown	
43	 49.80 +2    59431..59922    	 +	163	25010118	-	gbs0043	-	Unknown	
44	 49.35 +2    59909..60982    	 +	357	25010119	-	gbs0044	-	Unknown	
45	 31.78 -1    60992..61249    	 +	85	25010120	-	gbs0045	-	Unknown	
46	 35.69       61615..62718    	 +	367	25010121	-	gbs0046	-	Unknown	
47	 44.26 +2    62804..64102    	 +	432	25010122	-	gbs0047	-	unknown	
48	 28.13 -2    64256..65158    	 +	300	25010123	-	gbs0048	-	Unknown	
49	 37.84       65447..66445    	 +	332	25010124	ruvB	gbs0049	-	unknown	
50	 38.81       66597..67034    	 +	145	25010125	-	gbs0050	-	Unknown	
51	 34.65       67041..67421    	 +	126	25010126	-	gbs0051	-	Unknown	
52	 34.46       67418..69196    	 +	592	25010127	-	gbs0052	-	Unknown	
53	 39.05       69465..72107    	 +	880	25010128	-	gbs0053	-	Unknown	
54	 43.07 +2    72286..73302    	 +	338	25010129	-	gbs0054	-	Unknown	
55	 35.95       73423..74913    	 +	496	25010130	thrC	gbs0055	-	Unknown	
56	 35.99       75018..76298    	 +	426	25010131	-	gbs0056	-	Unknown	
57	 41.10 +1    76504..76812    	 +	102	25010132	rpsJ	gbs0057	-	ribosomal protein S10	
58	 42.11 +1    76917..77543    	 +	208	25010133	rplC	gbs0058	-	ribosomal protein L3	
59	 42.79 +2    77567..78190    	 +	207	25010134	rplD	gbs0059	-	ribosomal protein L4	
60	 36.70       78190..78486    	 +	98	25010135	rplW	gbs0060	-	ribosomal protein L23	
61	 40.77 +1    78504..79337    	 +	277	25010136	rplB	gbs0061	-	ribosomal protein L2	
62	 39.78 +1    79436..79714    	 +	92	25010137	rpsS	gbs0062	-	ribosomal protein S19	
63	 39.71 +1    79730..80074    	 +	114	25010138	rplV	gbs0063	-	ribosomal protein L22	
64	 40.52 +1    80087..80740    	 +	217	25010139	rpsC	gbs0064	-	ribosomal protein S3	
65	 42.75 +2    80744..81157    	 +	137	25010140	rplP	gbs0065	-	ribosomal protein L16	
66	 34.78       81167..81373    	 +	68	25010141	rpmC	gbs0066	-	ribosomal protein L29	
67	 37.93       81399..81659    	 +	86	25010142	rpsQ	gbs0067	-	ribosomal protein S17	
68	 44.17 +2    81684..82052    	 +	122	25010143	rplN	gbs0068	-	ribosomal protein L14	
69	 38.89       82132..82437    	 +	101	25010144	rplX	gbs0069	-	ribosomal protein L24	
70	 38.86       82461..83003    	 +	180	25010145	rplE	gbs0070	-	ribosomal protein L5	
71	 43.55 +2    83021..83206    	 +	61	25010146	-	gbs0071	-	ribosomal protein S14	
72	 35.34       83361..83759    	 +	132	25010147	rpsH	gbs0072	-	ribosomal protein S8	
73	 39.11       83869..84405    	 +	178	25010148	rplF	gbs0073	-	ribosomal protein L6	
74	 44.54 +2    84506..84862    	 +	118	25010149	rplR	gbs0074	-	ribosomal protein L18	
75	 43.64 +2    84881..85375    	 +	164	25010150	rpsE	gbs0075	-	ribosomal protein S5	
76	 37.78       85390..85569    	 +	59	25010151	rpmD	gbs0076	-	ribosomal protein L30	
77	 41.27 +1    85694..86134    	 +	146	25010152	rplO	gbs0077	-	ribosomal protein L15	
78	 34.87       86155..87459    	 +	434	25010153	secY	gbs0078	-	Unknown	
79	 38.34       87554..88192    	 +	212	25010154	adk	gbs0079	-	adenylate kinase	
80	 37.90       88308..88526    	 +	72	25010155	-	gbs0080	-	translation initiation factor IF-1	
81	 37.61       88552..88668    	 +	38	25010156	-	gbs0081	-	ribosomal protein L36	
82	 40.16 +1    88686..89051    	 +	121	25010157	rpsM	gbs0082	-	ribosomal protein S13	
83	 44.01 +2    89069..89452    	 +	127	25010158	rpsK	gbs0083	-	30S ribosomal protein S11	
84	 37.06       89502..90440    	 +	312	25010159	rpoA	gbs0084	-	RNA polymerase (alpha subunit)	
85	 39.79 +1    90455..90841    	 +	128	25010160	rplQ	gbs0085	-	50S ribosomal protein L17	
86	 28.04 -2    97797..97985    	 +	62	25010161	-	gbs0086	-	Unknown	
87	 36.45       98319..98639    	 +	106	25010162	-	gbs0087	-	Unknown	
88	 30.43 -1    99429..99980    	 +	183	25010163	-	gbs0088	-	Unknown	
89	 28.57 -2   100200..100619   	 +	139	25010164	-	gbs0089	-	Unknown	
90	 30.00 -1   100819..101298   	 +	159	25010165	-	gbs0090	-	Unknown	
91	 39.25 +1   101420..102112   	 +	230	25010166	-	gbs0091	-	Unknown	
92	 35.86      102109..102861   	 +	250	25010167	-	gbs0092	-	Unknown	
93	 31.94 -1   102858..103433   	 +	191	25010168	-	gbs0093	-	Unknown	
94	 37.68      103576..104610   	 +	344	25010169	-	gbs0094	-	Unknown	
95	 40.84 +1   104613..105185   	 +	190	25010170	-	gbs0095	-	Unknown	
96	 39.78 +1   105366..107195   	 +	609	25010171	dnaK	gbs0096	-	Chaperone protein DnaK	
97	 41.49 +1   107484..108623   	 +	379	25010172	dnaJ	gbs0097	-	Chaperone protein DnaJ	
98	 34.21      108741..109988   	 +	415	25010173	-	gbs0098	-	unknown	
99	 36.29      110059..110835   	 +	258	25010174	-	gbs0099	-	Unknown	
100	 36.63      110798..111556   	 +	252	25010175	-	gbs0100	-	Unknown	

 
 35.67 MEAN 
 
 3.51  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.