IslandPath Analysis: Staphylococcus epidermidis ATCC 12228



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.28   STD DEV: 3.83
Staphylococcus epidermidis ATCC 12228, complete genome - 0..2499279
2419 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.70         362..1717     	 +	451	27466919	-	SE0001	-	chromosomal replication initiator protein	
2	 31.83        2026..3159     	 +	377	27466920	-	SE0002	-	DNA polymerase III beta subunit	
3	 34.50        3822..4937     	 +	371	27466921	-	SE0003	-	DNA repair and genetic recombination protein	
4	 36.85 +1     4948..6879     	 +	643	27466922	-	SE0004	-	DNA gyrase subunit B	
5	 36.73 +1     6916..9597     	 +	893	27466923	-	SE0005	-	DNA gyrase subunit A	
6	 38.01 +1     9988..10821    	 -	277	27466924	-	SE0006	-	conserved hypothetical protein	
7	 34.73       11648..12934    	 +	428	27466925	-	SE0007	-	seryl-tRNA synthetase	
8	 33.73       13462..14466    	 -	334	27466926	-	SE0008	-	truncated beta-hemplysin	
9	 36.36 +1    14829..15521    	 +	230	27466927	-	SE0009	-	amino acid permease	
10	 33.03       15518..15847    	 +	109	27466928	-	SE0010	-	conserved hypothetical protein	
11	 36.02       16136..17104    	 +	322	27466929	-	SE0011	-	putative homoserine-o-acetyltransferase	
12	 32.04       17353..18279    	 +	308	27466930	-	SE0012	-	conserved hypothetical protein	
13	 36.79 +1    18308..20275    	 +	655	27466931	-	SE0013	-	conserved hypothetical protein	
14	 34.23       20272..20718    	 +	148	27466932	-	SE0014	-	50S ribosomal protein L9	
15	 39.47 +1    20889..22289    	 +	466	27466933	-	SE0015	-	replicative DNA helicase	
16	 39.41 +1    22567..23850    	 +	427	27466934	-	SE0016	-	adenylosuccinate synthase	
17	 23.66 -2    24765..24857    	 +	30	27466935	-	SE0017	-	hypothetical protein	
18	 36.18 +1    24901..25602    	 +	233	27466936	-	SE0018	-	response regulator	
19	 37.75 +1    25615..27447    	 +	610	27466937	-	SE0019	-	two-component sensor histidine kinase	
20	 37.27 +1    27431..28777    	 +	448	27466938	-	SE0020	-	conserved hypothetical protein	
21	 33.71       28778..29569    	 +	263	27466939	-	SE0021	-	conserved hypothetical protein	
22	 38.70 +1    30189..30989    	 +	266	27466940	-	SE0022	-	conserved hypothetical protein	
23	 37.08 +1    32031..32510    	 +	159	27466941	-	SE0023	-	conserved hypothetical protein	
24	 19.67 -2    32604..32786    	 -	60	27466942	-	SE0024	-	hypothetical protein	
25	 25.30 -1    33035..35362    	 +	775	27466943	-	SE0025	-	teichoic acid biosynthesis protein F	
26	 27.11 -1    35651..36148    	 -	165	27466944	-	SE0026	-	spermidine acetyltransferase	
27	 22.48 -2    36423..36551    	 -	42	27466945	-	SE0027	-	conserved hypothetical protein	
28	 29.93       36816..37226    	 -	136	27466946	-	SE0028	-	conserved hypothetical protein	
29	 26.58 -1    37389..37610    	 -	73	27466947	-	SE0029	-	conserved hypothetical protein	
30	 36.45 +1    37624..38136    	 -	170	27466948	-	SE0030	-	conserved hypothetical protein	
31	 33.01       38142..38453    	 -	103	27466949	-	SE0031	-	conserved hypothetical protein	
32	 33.33       38455..38547    	 -	30	27466950	-	SE0032	-	conserved hypothetical protein	
33	 35.90       38540..38890    	 -	116	27466951	-	SE0033	-	conserved hypothetical protein	
34	 32.75       39497..40180    	 -	227	27466952	-	SE0034	-	conserved hypothetical protein	
35	 31.37       40427..41650    	 +	407	27466953	-	SE0035	-	penicillin binding protein 4	
36	 34.50       42441..44069    	 -	542	27466954	-	SE0036	-	cassette chromosome recombinase B	
37	 34.59       44091..45440    	 -	449	27466955	-	SE0037	-	cassette chromosome recombinase A	
38	 34.50       45674..47467    	 -	597	27466956	-	SE0038	-	conserved hypothetical protein	
39	 34.68       47467..47763    	 -	98	27466957	-	SE0039	-	conserved hypothetical protein	
40	 25.02 -1    47956..49002    	 -	348	27466958	-	SE0040	-	conserved hypothetical protein	
41	 28.57       49457..50611    	 +	384	27466959	-	SE0041	-	Abi-alpha protein	
42	 27.47 -1    50641..51441    	 +	266	27466960	-	SE0042	-	abortive phage resistance protein	
43	 25.00 -1    51626..51769    	 +	47	27466961	-	SE0043	-	type I restriction enzyme R protein	
44	 28.26 -1    51762..52964    	 +	400	27466962	-	SE0044	-	probable specificity determinant HsdS	
45	 25.00 -1    52968..53219    	 -	83	27466963	-	SE0045	-	truncated transposase	
46	 27.11 -1    53287..53784    	 -	165	27466964	-	SE0046	-	spermidine acetyltransferase	
47	 22.48 -2    54063..54191    	 -	42	27466965	-	SE0047	-	hypothetical protein	
48	 29.68       54456..54866    	 -	136	27466966	-	SE0048	-	conserved hypothetical protein	
49	 31.48       55172..55279    	 -	35	27466967	-	SE0049	-	hypothetical protein	
50	 38.24 +1    55264..55467    	 -	67	27466968	-	SE0050	-	conserved hypothetical protein	
51	 33.04       55611..56624    	 -	337	27466969	-	SE0051	-	conserved hypothetical protein	
52	 32.12       56998..57327    	 -	109	27466970	-	SE0052	-	conserved hypothetical protein	
53	 33.65       57343..57654    	 -	103	27466971	-	SE0053	-	conserved hypothetical protein	
54	 31.18       57656..57748    	 -	30	27466972	-	SE0054	-	conserved hypothetical protein	
55	 36.75 +1    57741..58091    	 -	116	27466973	-	SE0055	-	conserved hypothetical protein	
56	 33.46       58592..60220    	 -	542	27466974	-	SE0056	-	cassette chromosome recombinase B	
57	 33.19       60217..61578    	 -	453	27466975	-	SE0057	-	cassette chromosome recombinase A	
58	 32.82       61765..62346    	 -	193	27466976	-	SE0058	-	conserved hypothetical protein	
59	 30.83       62622..62741    	 +	39	27466977	-	SE0059	-	cassette chromosome recombinase A	
60	 35.56       62853..63212    	 -	119	27466978	-	SE0060	-	hypothetical protein	
61	 39.39 +1    63848..63946    	 +	32	27466979	-	SE0061	-	hypothetical protein	
62	 34.94       64066..66000    	 +	644	27466980	-	SE0062	-	copper-transporting ATPase copA	
63	 25.20 -1    67123..67245    	 -	40	27466981	-	SE0063	-	truncated transposase	
64	 27.68 -1    67312..67488    	 -	58	27466982	-	SE0064	-	truncated transposase	
65	 27.64 -1    67457..67579    	 -	40	27466983	-	SE0065	-	truncated transposase	
66	 22.22 -2    67566..67673    	 -	35	27466984	-	SE0066	-	truncated transposase	
67	 32.16       67822..67992    	 -	56	27466985	-	SE0067	-	truncated transposase	
68	 24.56 -2    68194..68763    	 +	189	27466986	-	SE0068	-	hypothetical protein	
69	 22.97 -2    68808..69965    	 +	385	27466987	-	SE0069	-	hypothetical protein	
70	 32.91       70136..70372    	 +	78	27466988	-	SE0070	-	hypothetical protein	
71	 34.37       70397..71071    	 +	224	27466989	-	SE0071	-	transposase for IS-like element	
72	 35.19       71099..71476    	 -	125	27466990	-	SE0072	-	lipoprotein signal peptidase	
73	 38.62 +1    71924..72112    	 +	62	27466991	-	SE0073	-	cadmium efflux system accesory protein	
74	 37.11 +1    72366..73133    	 +	255	27466992	-	SE0074	-	putative divalent heavy-metal cations transporter	
75	 37.61 +1    73390..75798    	 +	802	27466993	-	SE0075	-	cadmium resistance protein B	
76	 29.18       75779..77440    	 -	553	27466994	-	SE0076	-	truncated transposase	
77	 39.93 +1    77768..79282    	 +	504	27466995	-	SE0077	-	dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3	
78	 34.39       79510..80172    	 +	220	27466996	-	SE0078	-	cadmium resistance transporter, putative	
79	 34.52       80680..81354    	 -	224	27466997	-	SE0079	-	transposase for IS-like element	
80	 41.04 +2    81622..82983    	 +	453	27466998	-	SE0080	-	regulatory protein	
81	 40.44 +2    83283..83690    	 +	135	27466999	-	SE0081	-	conserved hypothetical protein	
82	 38.42 +1    83707..84060    	 +	117	27467000	-	SE0082	-	conserved hypothetical protein	
83	 42.29 +2    84057..84737    	 +	226	27467001	-	SE0083	-	conserved hypothetical protein	
84	 44.83 +2    84863..85210    	 +	115	27467002	-	SE0084	-	MERCURIC TRANSPORT PROTEIN	
85	 46.23 +2    85268..86911    	 +	547	27467003	-	SE0085	-	dihydrolipoamide dehydrogenase	
86	 53.15 +2    86993..87643    	 +	216	27467004	-	SE0086	-	organomercurial lyase	
87	 39.53 +1    87838..88386    	 -	182	27467005	-	SE0087	-	conserved hypothetical protein	
88	 42.59 +2    88583..88798    	 +	71	27467006	-	SE0088	-	hypothetical protein	
89	 37.94 +1    88823..89104    	 +	93	27467007	-	SE0089	-	hypothetical protein	
90	 34.52       89170..89844    	 -	224	27467008	-	SE0090	-	transposase for IS-like element	
91	 29.73       90096..90206    	 +	36	27467009	-	SE0091	-	type I restriction enzyme R protein	
92	 28.74       90561..91256    	 +	231	27467010	-	SE0092	-	hypothetical protein	
93	 25.09 -1    91329..91874    	 -	181	27467011	-	SE0093	-	transcriptional regulator tetR-family	
94	 28.67       92040..92768    	 +	242	27467012	-	SE0094	-	ABC transporter ecsA-like protein	
95	 30.23       92765..93859    	 +	364	27467013	-	SE0095	-	conserved hypothetical protein	
96	 31.33       93874..94821    	 +	315	27467014	-	SE0096	-	alginate lyase	
97	 28.22 -1    94836..95441    	 +	201	27467015	-	SE0097	-	hypothetical protein	
98	 24.92 -1    95718..96347    	 +	209	27467016	-	SE0098	-	conserved hypothetical protein	
99	 25.51 -1    96362..96604    	 +	80	27467017	-	SE0099	-	hypothetical protein	
100	 28.03 -1    97062..97193    	 +	43	27467018	-	SE0100	-	transposase	

 
 32.28 MEAN 
 
 3.83  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.