IslandPath Analysis: Staphylococcus aureus subsp. Aureus N315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.29
Staphylococcus aureus subsp. aureus N315, complete genome - 0..2813641
2594 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 32.67         517..1878     	 +	453	15925706	dnaA	SA0001	L	chromosomal replication initiator protein	
2	 32.80        2156..3289     	 +	377	15925707	dnaN	SA0002	L	DNA polymerase III, beta chain	
3	 35.37        3670..3915     	 +	81	15925708	-	SA0003	S	conserved hypothetical protein	
4	 33.69        3912..5024     	 +	370	15925709	recF	SA0004	L	DNA repair and genetic recombination protein	
5	 36.95 +1     5034..6968     	 +	644	15925710	gyrB	SA0005	L	DNA gyrase subunit B	
6	 36.74 +1     7005..9674     	 +	889	15925711	gyrA	SA0006	L	DNA gyrase subunit A	
7	 36.58 +1     9762..10592    	 -	276	15925712	-	SA0007	G	conserved hypothetical protein	
8	 36.98 +1    10879..12414    	 +	511	15925713	hutH	SA0008	E	histidine ammonia-lyase	
9	 34.42       12793..14079    	 +	428	15925714	serS	SA0009	J	seryl-tRNA synthetase	
10	 37.07 +1    14730..15425    	 +	231	15925715	-	SA0010	E	hypothetical protein, similar to amino acid permease	
11	 33.94       15422..15751    	 +	109	15925716	-	SAS001	-	Conserved hypothetical protein	
12	 35.45       16093..17082    	 +	329	15925717	-	SA0011	E	hypothetical protein, similar to homoserine-o-acetyltransferase	
13	 32.43       17318..18313    	 +	331	15925718	-	SA0012	-	conserved hypothetical protein	
14	 35.16       18328..20295    	 +	655	15925719	-	SA0013	R	conserved hypothetical protein	
15	 31.54       20292..20738    	 +	148	15925720	rplI	SA0014	J	50S ribosomal protein L9	
16	 38.26 +1    20770..22170    	 +	466	15925721	dnaC	SA0015	L	replicative DNA helicase	
17	 36.60 +1    22448..23731    	 +	427	15925722	purA	SA0016	F	adenylosuccinate synthase	
18	 36.44 +1    24928..25635    	 +	235	15925723	vicR	SA0017	T	response regulator	
19	 34.92       25648..27474    	 +	608	15925724	vicK	SA0018	T	two-component sensor histidine kinase	
20	 35.39       27440..28801    	 +	453	15925725	-	SA0019	-	conserved hypothetical protein	
21	 32.70       28802..29590    	 +	262	15925726	-	SA0020	-	conserved hypothetical protein	
22	 35.96       29979..30779    	 +	266	15925727	-	SA0021	R	conserved hypothetical protein	
23	 38.38 +1    31006..33324    	 +	772	15925728	-	SA0022	F	hypothetical protein, similar to 5'-nucleotidase	
24	 39.38 +1    33692..34171    	 +	159	15925729	orfX	SA0023	S	conserved hypothetical protein orfX	
25	 28.32 -1    34454..35749    	 +	431	15925730	-	SA0024	-	hypothetical protein	
26	 24.58 -2    36164..36403    	 +	79	15925731	-	SA0025	-	hypothetical protein	
27	 34.37       36435..37109    	 -	224	15925732	-	SA0026	L	transposase for IS-like element	
28	 32.85       37200..37406    	 -	68	15925733	truncated(repB)	SA0028	-	truncated replication protein for plasmid	
29	 32.58       37410..38204    	 -	264	15925734	truncated(repB)	SA0028	-	truncated replication protein for pUB110 plasmid	
30	 30.86       38229..38309    	 -	26	15925735	-	SAS002	-	hypothetical protein	
31	 33.73       38428..39690    	 -	420	15925736	pre	SA0029	-	plasmid recombination enzyme	
32	 46.10 +2    39799..39939    	 +	46	15925737	-	SA0030	-	hypothetical protein	
33	 37.50 +1    39987..40178    	 +	63	15925738	-	SA0031	-	hypothetical protein	
34	 40.49 +2    40197..40601    	 -	134	15925739	bleO	SA0032	E	bleomycin resistance protein	
35	 42.28 +2    40818..41588    	 -	256	15925740	aadD	SA0033	-	kanamycin nucleotidyltransferase	
36	 34.37       41781..42455    	 -	224	15925741	-	SA0034	L	transposase for IS-like element	
37	 30.12       42539..42880    	 +	113	15925742	-	SA0035	I	probable HMG-CoA synthase	
38	 32.39       43717..44349    	 +	210	15925743	-	SA0036	C	glycerophosphoryldiester phosphodiesterase homologue	
39	 29.14 -1    44558..44986    	 +	142	15925744	-	SA0037	I	conserved hypothetical protein	
40	 30.64       45032..47038    	 -	668	15925745	mecA	SA0038	M	penicillin binding protein 2 prime	
41	 28.67 -1    47138..48895    	 +	585	15925746	mecR1	SA0039	M	methicillin resistance protein	
42	 25.81 -2    48895..49266    	 +	123	15925747	mecI	SA0040	-	methicillin resistance regulatory protein	
43	 29.00 -1    49753..50883    	 +	376	15925748	xylR	SA0041	K	xylose repressor homologue	
44	 30.53       50997..51389    	 -	130	15925749	-	SA0042	P	conserved hypothetical protein	
45	 33.12       51393..52331    	 -	312	15925750	-	SA0043	R	conserved hypothetical protein	
46	 32.30       52364..53428    	 -	354	15925751	-	SA0044	O	conserved hypothetical protein	
47	 24.90 -2    53564..53824    	 +	86	15925752	-	SA0045	S	conserved hypothetical protein	
48	 32.87       53824..54468    	 +	214	15925753	-	SA0046	-	conserved hypothetical protein	
49	 34.23       54807..55475    	 -	222	15925754	-	SA0047	Q	hypothetical protein in transposon Tn554	
50	 32.51       55978..56709    	 +	243	15925755	ermA	SA0048	J	rRNA methylase	
51	 36.40 +1    56835..57617    	 -	260	15925756	ant(9)	SA0049	R	O-nucleotidylltransferase(9)	
52	 29.89       57768..58145    	 -	125	15925757	tnpC	SA0050	-	transposase for Tn554	
53	 33.86       58152..60044    	 -	630	15925758	tnpB	SA0051	L	transposase B for Tn554	
54	 32.14       60041..61126    	 -	361	15925759	tnpA	SA0052	L	transposase A for Tn554	
55	 33.96       61245..61562    	 -	105	15925760	truncated(radC)	SA0053	L	truncated hypothetical protein, similar to DNA repair protein	
56	 35.84       61583..62101    	 -	172	15925761	-	SA0054	-	hypothetical protein	
57	 32.05       62107..62418    	 -	103	15925762	-	SA0055	-	conserved hypothetical protein	
58	 34.76       62505..62855    	 -	116	15925763	-	SA0056	-	hypothetical protein	
59	 35.05       63373..65001    	 -	542	15925764	ccrB	SA0057	L	cassette chromosome recombinase B	
60	 34.81       65023..66372    	 -	449	15925765	ccrA	SA0058	L	cassette chromosome recombinase A	
61	 34.45       66606..68399    	 -	597	15925766	-	SA0059	-	hypothetical protein	
62	 34.68       68399..68695    	 -	98	15925767	-	SA0060	-	hypothetical protein	
63	 25.12 -2    68888..69934    	 -	348	15925768	-	SA0061	-	hypothetical protein	
64	 32.80       70185..70562    	 -	125	15925769	tnp	SA0063	-	transposase - Staphylococcus aureus IS150(fragment)	
65	 30.51       70674..71027    	 -	117	15925770	tnp	SA0063	L	transposase - Staphylococcus aureus IS150	
66	 31.56       71102..71326    	 -	74	15925771	-	SA0064	-	hypothetical protein, similar to transposase	
67	 37.26 +1    71837..72421    	 -	194	15925772	-	SA0065	S	conserved hypotehtical protein	
68	 37.36 +1    73485..74180    	 -	231	15925773	kdpE(SCCmec)	SA0066	T	hypothetical protein, similar to kdp operon transcriptional regulatory protein	
69	 36.71 +1    74155..76788    	 -	877	15925774	kdpD(SCCmec)	SA0067	T	hypothetical protein, similar to kdp operon sensor protein	
70	 37.00 +1    77092..78426    	 +	444	15925775	truncated(kdpA)	SA0069	-	potassium-transporting ATPase A chain homologue, truncated	
71	 36.47 +1    78356..78769    	 +	137	15925776	truncated(kdpA)	SA0069	P	potassium-transporting ATPase A chain homologue, truncated	
72	 39.76 +2    78788..80809    	 +	673	15925777	kdpB(SCCmec)	SA0070	P	potassium-transporting ATPase B chain homologue	
73	 40.05 +2    80857..81228    	 +	123	15925778	kdpC(SCCmec)	SA0071	P	potassium-transporting ATPase C chain homologue	
74	 33.56       81927..82796    	 -	289	15925779	-	SA0072	-	hypothetical protein	
75	 36.66 +1    82806..83708    	 -	300	15925780	-	SA0073	-	hypothetical protein	
76	 40.48 +2    83744..83869    	 +	41	15925781	-	SAS003	-	hypothetical protein	
77	 27.29 -1    83902..84381    	 -	159	15925782	-	SA0074	-	hypothetical protein	
78	 28.83 -1    84444..84776    	 -	110	15925783	-	SA0075	-	hypothetical protein	
79	 29.67 -1    84821..85447    	 -	208	15925784	-	SA0076	-	hypothetical protein	
80	 31.21       85562..87070    	 +	502	15925785	-	SA0077	T	hypothetical protein, similar to serine/threonine protein kinase	
81	 25.66 -2    87669..89402    	 +	577	15925786	-	SA0078	-	hypothetical protein	
82	 37.46 +1    89586..89924    	 -	112	15925787	-	SA0079	R	conserved hypothetical protein	
83	 31.48       90346..91101    	 -	251	15925788	-	SA0080	R	conserved hypothetical protein	
84	 30.65       91101..91361    	 -	86	15925789	-	SA0081	S	conserved hypothetical protein	
85	 31.64       91498..92562    	 +	354	15925790	-	SA0082	S	conserved hypothetical protein	
86	 33.48       92593..93927    	 +	444	15925791	-	SA0083	P	conserved hypothetical protein	
87	 32.66       93946..95139    	 +	397	15925792	-	SA0084	R	hypothetical protein, similar to homo sapiens CGI-44 protein, PRO1975 protein	
88	 38.91 +1    95806..96792    	 -	328	15925793	-	SA0085	R	conserved hypothetical protein	
89	 26.96 -1    97101..97304    	 +	67	15925794	-	SA0086	-	hypothetical protein	
90	 30.30       97353..97649    	 +	98	15925795	-	SA0087	-	hypothetical protein	
91	 31.05       97848..98459    	 +	203	15925796	-	SA0088	-	hypothetical protein	
92	 31.24       98726..101878   	 +	1050	15925797	-	SA0089	L	hypothetical protein, similar to DNA helicase	
93	 31.88      101935..102417   	 +	160	15925798	-	SA0090	-	hypothetical protein	
94	 33.74      102623..103609   	 +	328	15925799	plc	SA0091	-	1-phosphatidylinositol phosphodiesterase precurosr	
95	 30.09      103830..104600   	 +	256	15925800	-	SA0092	-	hypothetical protein	
96	 29.31 -1   104652..105422   	 +	256	15925801	-	SA0093	-	hypothetical protein	
97	 29.95      105490..106257   	 +	255	15925802	-	SA0094	-	hypothetical protein	
98	 29.05 -1   106322..107092   	 +	256	15925803	-	SA0095	-	hypothetical protein	
99	 30.86      107159..107926   	 +	255	15925804	-	SA0096	-	hypothetical protein	
100	 33.69      108023..110260   	 +	745	15925805	-	SA0097	K	hypothetical protein, similar to transcription regulator AraC/XylS family	

 
 33.01 MEAN 
 
 3.29  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.