IslandPath Analysis: Staphylococcus aureus strain Mu50



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.33
Staphylococcus aureus strain Mu50, complete genome - 0..2878040
2714 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 32.67         517..1878     	 +	453	15922991	dnaA	SAV0001	-	chromosomal replication initiator protein	
2	 32.80        2156..3289     	 +	377	15922992	dnaN	SAV0002	-	DNA polymerase III beta chain	
3	 35.37        3670..3915     	 +	81	15922993	-	SAV0003	-	conserved hypothetical protein	
4	 33.69        3912..5024     	 +	370	15922994	recF	SAV0004	-	DNA repair and genetic recombination protein	
5	 36.95 +1     5034..6968     	 +	644	15922995	gyrB	SAV0005	-	DNA gyrase subunit B	
6	 36.67 +1     7005..9674     	 +	889	15922996	gyrA	SAV0006	-	DNA gyrase subunit A	
7	 36.58 +1     9762..10592    	 -	276	15922997	-	SAV0007	-	conserved hypothetical protein	
8	 36.98 +1    10879..12414    	 +	511	15922998	hutH	SAV0008	-	histidine ammonia-lyase	
9	 34.42       12793..14079    	 +	428	15922999	serS	SAV0009	-	seryl-tRNA synthetase	
10	 37.07 +1    14730..15425    	 +	231	15923000	-	SAV0010	-	hypothetical protein	
11	 33.94       15422..15751    	 +	109	15923001	-	SAV0011	-	Conserved hypothetical protein	
12	 35.45       16094..17083    	 +	329	15923002	-	SAV0012	-	hypothetical protein	
13	 32.43       17319..18314    	 +	331	15923003	-	SAV0013	-	conserved hypothetical protein	
14	 35.16       18329..20296    	 +	655	15923004	-	SAV0014	-	conserved hypothetical protein	
15	 31.54       20293..20739    	 +	148	15923005	rplI	SAV0015	-	50S ribosomal protein L9	
16	 38.26 +1    20771..22171    	 +	466	15923006	dnaC	SAV0016	-	replicative DNA helicase	
17	 36.60 +1    22449..23732    	 +	427	15923007	purA	SAV0017	-	adenylosuccinate synthase	
18	 36.44 +1    24929..25636    	 +	235	15923008	vicR	SAV0018	-	response regulator	
19	 34.92       25649..27475    	 +	608	15923009	vicK	SAV0019	-	two-component sensor histidine kinase	
20	 35.39       27441..28802    	 +	453	15923010	-	SAV0020	-	conserved hypothetical protein	
21	 32.70       28803..29591    	 +	262	15923011	-	SAV0021	-	conserved hypothetical protein	
22	 35.96       29980..30780    	 +	266	15923012	-	SAV0022	-	conserved hypothetical protein	
23	 38.22 +1    31007..33259    	 +	750	15923013	-	SAV0023	-	hypothetical protein	
24	 39.38 +1    33697..34176    	 +	159	15923014	-	SAV0024	-	conserved hypothetical protein orfX	
25	 28.32 -1    34459..35754    	 +	431	15923015	-	SAV0025	-	hypothetical protein	
26	 24.58 -2    36169..36408    	 +	79	15923016	-	SAV0026	-	hypothetical protein	
27	 34.37       36440..37114    	 -	224	15923017	tnp	SAV0027	-	transposase for IS-like element	
28	 32.85       37205..37411    	 -	68	15923018	truncated-repB	SAV0029	-	truncated replication protein for plasmid	
29	 32.33       37415..38209    	 -	264	15923019	truncated-repB	SAV0029	-	truncated replication protein for pUB110 plasmid	
30	 30.86       38234..38314    	 -	26	15923020	-	SAV0030	-	hypothetical protein	
31	 33.65       38433..39695    	 -	420	15923021	pre	SAV0031	-	plasmid recombination enzyme	
32	 46.10 +2    39804..39944    	 +	46	15923022	-	SAV0032	-	hypothetical protein	
33	 37.50 +1    39992..40183    	 +	63	15923023	-	SAV0033	-	hypothetical protein	
34	 40.49 +2    40202..40606    	 -	134	15923024	bleO	SAV0034	-	bleomycin resistance protein	
35	 42.28 +2    40823..41593    	 -	256	15923025	aadD	SAV0035	-	kanamycin nucleotidyltransferase	
36	 35.42       41786..41977    	 -	63	15923026	tnp	SAV0037	-	transposase for IS-like element	
37	 34.00       42011..42460    	 -	149	15923027	tnp	SAV0037	-	transposase for IS-like element	
38	 30.12       42544..42885    	 +	113	15923028	-	SAV0038	-	probable HMG-CoA synthase	
39	 33.47       43682..44425    	 +	247	15923029	-	SAV0039	-	glycerophosphoryl diester phosphodiesterase homolog	
40	 29.14 -1    44522..44950    	 +	142	15923030	-	SAV0040	-	conserved hypothetical protein	
41	 30.64       44996..47002    	 -	668	15923031	mecA	SAV0041	-	penicillin binding protein 2 prime	
42	 28.67 -1    47102..48859    	 +	585	15923032	mecR1	SAV0042	-	methicillin resistance protein	
43	 25.54 -2    48859..49230    	 +	123	15923033	mecI	SAV0043	-	methicillin resistance regulatory protein	
44	 28.91 -1    49717..50847    	 +	376	15923034	xylR	SAV0044	-	xylose repressor homologue	
45	 30.53       50961..51353    	 -	130	15923035	-	SAV0045	-	conserved hypothetical protein	
46	 33.12       51357..52295    	 -	312	15923036	-	SAV0046	-	conserved hypothetical protein	
47	 32.30       52328..53392    	 -	354	15923037	-	SAV0047	-	conserved hypothetical protein	
48	 24.90 -2    53528..53788    	 +	86	15923038	-	SAV0048	-	conserved hypothetical protein	
49	 32.87       53788..54432    	 +	214	15923039	-	SAV0049	-	conserved hypothetical protein	
50	 34.23       54771..55439    	 -	222	15923040	-	SAV0050	-	hypothetical protein	
51	 27.59 -1    55792..55965    	 -	57	15923041	-	SAV0051	-	hypothetical protein	
52	 32.51       55967..56698    	 +	243	15923042	ermA	SAV0052	-	rRNA methylase	
53	 36.40 +1    56824..57606    	 -	260	15923043	ant(9)	SAV0053	-	O-nucleotidylltransferase	
54	 29.89       57757..58134    	 -	125	15923044	tnpC	SAV0054	-	transposase C	
55	 33.86       58141..60033    	 -	630	15923045	tnpB	SAV0055	-	transposase B	
56	 32.14       60030..61115    	 -	361	15923046	tnpA	SAV0056	-	transposase A	
57	 33.96       61234..61551    	 -	105	15923047	truncated-radC	SAV0057	-	truncated hypothetical protein	
58	 35.84       61572..62090    	 -	172	15923048	-	SAV0058	-	hypothetical protein	
59	 32.05       62096..62407    	 -	103	15923049	-	SAV0059	-	conserved hypothetical protein	
60	 34.76       62494..62844    	 -	116	15923050	-	SAV0060	-	hypothetical protein	
61	 35.05       63362..64990    	 -	542	15923051	ccrB	SAV0061	-	cassette chromosome recombinase B	
62	 34.81       65012..66361    	 -	449	15923052	ccrA	SAV0062	-	cassette chromosome recombinase A	
63	 34.45       66595..68388    	 -	597	15923053	-	SAV0063	-	hypothetical protein	
64	 34.68       68388..68684    	 -	98	15923054	-	SAV0064	-	hypothetical protein	
65	 25.12 -2    68877..69923    	 -	348	15923055	-	SAV0065	-	hypothetical protein	
66	 32.80       70174..70551    	 -	125	15923056	tnp	SAV0067	-	transposase	
67	 30.23       70663..71016    	 -	117	15923057	tnp	SAV0067	-	transposase	
68	 30.79       71001..71315    	 -	104	15923058	-	SAV0068	-	hypothetical protein	
69	 37.26 +1    71826..72410    	 -	194	15923059	-	SAV0069	-	conserved hypothetical protein	
70	 37.36 +1    73474..74169    	 -	231	15923060	kdpE	SAV0070	-	hypothetical protein	
71	 36.71 +1    74144..76777    	 -	877	15923061	kdpD	SAV0071	-	hypothetical protein	
72	 36.79 +1    77081..78757    	 +	558	15923062	truncated-kdpA	SAV0072	-	K+-transporting ATPase chain A	
73	 39.76 +2    78776..80797    	 +	673	15923063	kdpB(SCCmec)	SAV0073	-	potassium-transporting ATPase B chain homologue	
74	 37.14 +1    80846..81370    	 +	174	15923064	kdpC(SCCmec)	SAV0074	-	potassium-transporting ATPase C chain homologue	
75	 33.56       81915..82784    	 -	289	15923065	-	SAV0075	-	hypothetical protein	
76	 36.66 +1    82794..83696    	 -	300	15923066	-	SAV0076	-	hypothetical protein	
77	 40.48 +2    83732..83857    	 +	41	15923067	-	SAV0077	-	hypothetical protein	
78	 27.29 -1    83890..84369    	 -	159	15923068	-	SAV0078	-	hypothetical protein	
79	 28.83 -1    84432..84764    	 -	110	15923069	-	SAV0079	-	hypothetical protein	
80	 29.67 -1    84809..85435    	 -	208	15923070	-	SAV0080	-	hypothetical protein	
81	 31.21       85550..87058    	 +	502	15923071	-	SAV0081	-	hypothetical protein	
82	 25.66 -2    87657..89390    	 +	577	15923072	-	SAV0082	-	hypothetical protein	
83	 37.46 +1    89574..89912    	 -	112	15923073	-	SAV0083	-	conserved hypothetical protein	
84	 31.48       90334..91089    	 -	251	15923074	-	SAV0084	-	conserved hypothetical protein	
85	 30.65       91089..91349    	 -	86	15923075	-	SAV0085	-	conserved hypothetical protein	
86	 31.64       91486..92550    	 +	354	15923076	-	SAV0086	-	conserved hypothetical protein	
87	 33.48       92581..93915    	 +	444	15923077	-	SAV0087	-	conserved hypothetical protein	
88	 32.66       93934..95127    	 +	397	15923078	-	SAV0088	-	hypothetical protein	
89	 38.91 +1    95794..96780    	 -	328	15923079	-	SAV0089	-	conserved hypothetical protein	
90	 26.96 -1    97089..97292    	 +	67	15923080	-	SAV0090	-	hypothetical protein	
91	 30.30       97341..97637    	 +	98	15923081	-	SAV0091	-	hypothetical protein	
92	 31.05       97836..98447    	 +	203	15923082	-	SAV0092	-	hypothetical protein	
93	 31.24       98714..101866   	 +	1050	15923083	-	SAV0093	-	hypothetical protein	
94	 31.88      101923..102405   	 +	160	15923084	-	SAV0094	-	hypothetical protein	
95	 33.74      102611..103597   	 +	328	15923085	plc	SAV0095	-	1-phosphatidylinositol phosphodiesterase precurosr	
96	 30.09      103818..104588   	 +	256	15923086	-	SAV0096	-	hypothetical protein	
97	 29.31 -1   104640..105410   	 +	256	15923087	-	SAV0097	-	hypothetical protein	
98	 29.95      105478..106245   	 +	255	15923088	-	SAV0098	-	hypothetical protein	
99	 29.05 -1   106310..107080   	 +	256	15923089	-	SAV0099	-	hypothetical protein	
100	 30.86      107147..107914   	 +	255	15923090	-	SAV0100	-	hypothetical protein	

 
 33.03 MEAN 
 
 3.33  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.