IslandPath Analysis: Shewanella oneidensis MR-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.87   STD DEV: 4.26
Shewanella oneidensis MR-1, complete genome - 0..4969803
4630 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 45.58         334..774      	 -	146	24371601	mioC	SO0001	-	mioC protein	
2	 44.49         954..2504     	 +	516	24371602	-	SO0002	-	proton/peptide symporter family protein	
3	 48.91        2589..3962     	 -	457	24371603	trmE	SO0003	-	tRNA modification GTPase TrmE	
4	 45.57        4058..5683     	 -	541	24371604	-	SO0004	-	inner membrane protein, 60 kDa	
5	 47.84        5687..5941     	 -	84	24371605	-	SO0005	-	conserved hypothetical protein TIGR00278	
6	 44.82        5908..6264     	 -	118	24371606	rnpA	SO0006	-	ribonuclease P protein component	
7	 54.35 +1     6281..6418     	 -	45	24371607	rpmH	SO0007	-	ribosomal protein L34	
8	 44.61        6873..8255     	 +	460	24371608	dnaA	SO0008	-	chromosomal replication initiator protein DnaA	
9	 44.60        8276..9376     	 +	366	24371609	dnaN	SO0009	-	DNA polymerase III, beta subunit	
10	 45.89        9539..10621    	 +	360	24371610	recF	SO0010	-	DNA replication and repair protein RecF	
11	 46.53       10638..13055    	 +	805	24371611	gyrB	SO0011	-	DNA gyrase, B subunit	
12	 46.30       13129..13791    	 -	220	24371612	-	SO0012	-	glutathione S-transferase family protein	
13	 46.07       14311..15111    	 +	266	24371613	-	SO0013	-	hypothetical protein	
14	 48.04       15180..17246    	 -	688	24371614	glyS	SO0014	-	glycyl-tRNA synthetase, beta subunit	
15	 49.89       17256..18161    	 -	301	24371615	glyQ	SO0015	-	glycyl-tRNA synthetase, alpha subunit	
16	 43.92       18279..18854    	 +	191	24371616	tag	SO0016	-	DNA-3-methyladenine glycosidase I	
17	 46.54       18941..22090    	 -	1049	24371617	-	SO0017	-	conserved hypothetical protein	
18	 48.17       22330..22767    	 -	145	24371618	-	SO0018	-	conserved hypothetical protein	
19	 46.34       22815..23060    	 -	81	24371619	-	SO0019	-	conserved hypothetical protein	
20	 49.66       23307..24470    	 -	387	24371620	fadA	SO0020	-	fatty oxidation complex, beta subunit	
21	 49.14       24493..26643    	 -	716	24371621	fadB	SO0021	-	fatty oxidation complex, alpha subunit	
22	 46.82       27069..28388    	 +	439	24371622	pepQ	SO0022	-	prolidase	
23	 46.50       28404..29018    	 +	204	24371623	-	SO0023	-	conserved hypothetical protein TIGR00257	
24	 46.06       29096..30556    	 +	486	24371624	trkH-1	SO0024	-	potassium uptake protein TrkH	
25	 42.10       30558..31082    	 +	174	24371625	-	SO0025	-	conserved hypothetical protein	
26	 41.42 -1    31147..31455    	 -	102	24371626	-	SO0026	-	transcriptional regulator, ArsR family	
27	 43.96       31656..32210    	 +	184	24371627	-	SO0027	-	protoporphyrinogen oxidase, putative	
28	 47.47       32252..33694    	 -	480	24371628	trkH-2	SO0028	-	potassium uptake protein TrkH	
29	 49.50       33706..35115    	 -	469	24371629	trkA	SO0029	-	potassium uptake protein TrkA	
30	 49.96       35131..36417    	 -	428	24371630	sun	SO0030	-	sun protein	
31	 51.10 +1    36420..37376    	 -	318	24371631	fmt	SO0031	-	methionyl-tRNA formyltransferase	
32	 42.80       37392..37898    	 -	168	24371632	def-1	SO0032	-	polypeptide deformylase	
33	 44.94       38024..39160    	 +	378	24371633	-	SO0033	-	LysM domain protein	
34	 48.18       39244..40260    	 +	338	24371634	-	SO0034	-	DNA processing protein DprA, putative	
35	 42.35       40263..40739    	 +	158	24371635	smg	SO0035	-	smg protein	
36	 45.68       40852..41418    	 +	188	24371636	-	SO0036	-	topoisomerase DNA-binding C4 zinc finger domain protein	
37	 48.50       41557..42123    	 +	188	24371637	-	SO0037	-	Sua5/YciO/YrdC/YwlC family protein	
38	 50.83 +1    42152..43060    	 +	302	24371638	hemF	SO0038	-	coproporphyrinogen III oxidase, aerobic	
39	 45.66       43090..43527    	 -	145	24371639	-	SO0039	-	conserved hypothetical protein	
40	 47.22       43717..44580    	 +	287	24371640	aroE	SO0040	-	shikimate 5-dehydrogenase	
41	 42.75       44606..44881    	 +	91	24371641	-	SO0041	-	conserved hypothetical protein	
42	 46.45       44973..45521    	 -	182	24371642	-	SO0042	-	carbonic anhydrase, family 3	
43	 43.59       45835..45951    	 +	38	24371643	-	SO0043	-	hypothetical protein	
44	 47.62       51728..51979    	 +	83	24371644	-	SO0044	-	conserved hypothetical protein	
45	 42.54       52004..52459    	 +	151	24371645	-	SO0045	-	Rrf2 family protein	
46	 48.68       52434..53189    	 -	251	24371646	-	SO0046	-	conserved hypothetical protein	
47	 46.24       53199..54407    	 -	402	24371647	-	SO0047	-	carboxyl-terminal protease, putative	
48	 47.15       54456..55490    	 -	344	24371648	-	SO0048	-	peptidase, M23/M37 family	
49	 51.00 +1    55600..57144    	 -	514	24371649	gpmA	SO0049	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	
50	 40.46 -1    57409..57843    	 +	144	24371650	-	SO0050	-	rhodanese domain protein	
51	 45.16       57826..57918    	 -	30	24371651	-	SO0051	-	hypothetical protein	
52	 46.84       58105..58578    	 +	157	24371652	secB	SO0052	-	protein-export protein SecB	
53	 51.13 +1    58583..59599    	 +	338	24371653	gpsA	SO0053	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)	
54	 50.80 +1    59949..61139    	 +	396	24371654	-	SO0054	-	conserved hypothetical protein TIGR00275	
55	 42.26       61362..63041    	 -	559	24371655	-	SO0055	-	conserved domain protein	
56	 49.80       63429..64187    	 +	252	24371656	-	SO0056	-	transporter, putative	
57	 49.49       64299..65660    	 -	453	24371657	-	SO0057	-	potassium uptake protein, Trk family	
58	 48.21       65662..66360    	 -	232	24371658	-	SO0058	-	potassium uptake protein, putative	
59	 49.86       66406..67095    	 -	229	24371659	kdpE	SO0059	-	transcriptional regulatory protein KdpE	
60	 49.57       67096..68142    	 -	348	24371660	-	SO0060	-	sensor histidine kinase	
61	 46.45       68407..68871    	 +	154	24371661	-	SO0061	-	lipoprotein, NLP/P60 family	
62	 40.57 -1    69205..69591    	 +	128	24371662	-	SO0062	-	hypothetical protein	
63	 45.80       69588..70895    	 +	435	24371663	-	SO0063	-	conserved hypothetical protein	
64	 41.44 -1    70914..71024    	 -	36	24371664	-	SO0064	-	hypothetical protein	
65	 50.00       71134..71667    	 +	177	24371665	mog	SO0065	-	molybdenum cofactor biosynthesis protein Mog	
66	 48.32       72364..78060    	 +	1898	24371666	-	SO0066	-	conserved hypothetical protein	
67	 50.50 +1    78057..80339    	 +	760	24371667	-	SO0067	-	penicillin-binding protein 1C, putative	
68	 39.02 -1    80364..80609    	 -	81	24371668	-	SO0068	-	hypothetical protein	
69	 49.91       80667..81806    	 -	379	24371669	-	SO0069	-	transport protein, putative	
70	 54.15 +1    81904..82638    	 -	244	24371670	natA	SO0070	-	ATP-binding transport protein NatA	
71	 51.91 +1    82641..84260    	 -	539	24371671	-	SO0071	-	hydrolase, alpha/beta hydrolase fold family	
72	 54.30 +1    84353..84724    	 +	123	24371672	-	SO0072	-	transcriptional regulator, GntR family	
73	 50.81 +1    84765..85628    	 +	287	24371673	-	SO0073	-	ABC transporter, ATP-binding protein	
74	 49.62       85625..86932    	 +	435	24371674	-	SO0074	-	hypothetical protein	
75	 49.68       87148..88854    	 +	568	24371675	-	SO0075	-	AMP-binding family protein	
76	 46.92       88995..91481    	 +	828	24371676	-	SO0076	-	hypothetical protein	
77	 45.80       91601..92017    	 +	138	24371677	-	SO0077	-	conserved hypothetical protein	
78	 45.15       92009..92812    	 -	267	24371678	-	SO0078	-	hypothetical protein	
79	 43.45       92857..93123    	 -	88	24371679	-	SO0079	-	conserved hypothetical protein	
80	 46.15       93185..93613    	 -	142	24371680	-	SO0080	-	conserved hypothetical protein	
81	 48.18       93827..94156    	 +	109	24371681	-	SO0081	-	conserved hypothetical protein	
82	 47.34       94160..94516    	 +	118	24371682	-	SO0082	-	transcriptional regulator, MerR family	
83	 46.77       94704..95090    	 +	128	24371683	-	SO0083	-	carboxymuconolactone decarboxylase family protein	
84	 46.84       95148..95828    	 -	226	24371684	-	SO0084	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein	
85	 46.81       96204..96626    	 +	140	24371685	-	SO0085	-	hypothetical protein	
86	 41.18 -1    96994..97095    	 +	33	24371686	-	SO0086	-	hypothetical protein	
87	 48.66       97161..97721    	 +	186	24371687	-	SO0087	-	hypothetical protein	
88	 42.50       97916..98515    	 -	199	24371688	-	SO0088	-	hypothetical protein	
89	 47.37       98370..98540    	 +	56	24371689	-	SO0089	-	hypothetical protein	
90	 43.83       98787..99329    	 +	180	24371690	-	SO0090	-	hypothetical protein	
91	 32.16 -2    99494..100090   	 -	198	24371691	-	SO0091	-	hypothetical protein	
92	 39.10 -1   100249..100959   	 -	236	24371692	deoD-1	SO0092	-	purine nucleoside phosphorylase	
93	 39.48 -1   100974..102194   	 -	406	24371693	-	SO0093	-	NupC family protein	
94	 42.03      102352..102489   	 +	45	24371694	-	SO0094	-	hypothetical protein	
95	 50.77 +1   102534..103760   	 -	408	24371695	hutI	SO0095	-	imidazolonepropionase	
96	 53.95 +1   103967..104674   	 +	235	24371696	hutC	SO0096	-	histidine utilization repressor	
97	 54.10 +1   104801..106471   	 +	556	24371697	hutU	SO0097	-	urocanate hydratase	
98	 52.79 +1   106536..108077   	 +	513	24371698	hutH	SO0098	-	histidine ammonia-lyase	
99	 28.07 -2   108400..108513   	 +	37	24371699	-	SO0099	-	hypothetical protein	
100	 35.22 -2   108567..108725   	 +	52	24371700	-	SO0100	-	hypothetical protein	

 
 45.87 MEAN 
 
 4.26  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.