IslandPath Analysis: Rickettsia prowazekii MadridE



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.02   STD DEV: 3.37
Rickettsia prowazekii strain Madrid E, complete genome - 0..1111523
835 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 26.28 -1        1..822      	 +	273	15603882	-	RP001	S	unknown	
2	 29.26         906..1298     	 +	130	15603883	-	RP002	O	THIOREDOXIN (trxA)	
3	 27.67        1309..2067     	 +	252	15603884	-	RP003	G	O-ANTIGEN EXPORT SYSTEM ATP-BINDING PROTEIN RFBE (rfbE)	
4	 26.38 -1     2064..2840     	 +	258	15603885	-	RP004	M	O-ANTIGEN EXPORT SYSTEM PERMEASE PROTEIN RFBA (rfbA)	
5	 27.25        2837..3724     	 +	295	15603886	-	RP005	-	unknown	
6	 29.66        3757..5877     	 +	706	15603887	-	RP006	E	unknown	
7	 33.71 +1     6227..7021     	 -	264	15603888	-	RP007	M	ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N- ACETYLGLUCOSAMINE O-ACYLTRANSFERASE (lpxA)	
8	 33.79 +1     7031..7468     	 -	145	15603889	-	RP008	I	(3R)-HYDROXYMYRISTOYL-[ACYL CARRIER PROTEIN] DEHYDRATASE  (fabZ)	
9	 32.56        7659..8699     	 -	346	15603890	-	RP009	M	UDP-3-O-[3-HYDROXYMYRISTOYL] GLUCOSAMINE N-ACYLTRANSFERASE (lpxD)	
10	 35.09 +1     9661..10686    	 +	341	15603891	-	RP011	R	NIFR3-LIKE PROTEIN (nifR3)	
11	 26.91       10683..11756    	 +	357	15603892	-	RP012	-	unknown	
12	 27.36       11821..12255    	 -	144	15603893	-	RP013	R	unknown	
13	 24.89 -1    12243..13142    	 -	299	15603894	-	RP014	P	unknown	
14	 27.15       13139..14302    	 -	387	15603895	-	RP015	J	POLY(A) POLYMERASE (pcnB)	
15	 31.46       15067..15975    	 +	302	15603896	-	RP016	-	unknown	
16	 30.57       15972..17855    	 +	627	15603897	-	RP017	-	unknown	
17	 28.26       17954..18997    	 +	347	15603898	-	RP018	-	190 KD ANTIGEN PRECURSOR (sca1)	
18	 28.37       21182..21685    	 -	167	15603899	-	RP020	C	ATP SYNTHASE B CHAIN PRECURSOR (atpF)	
19	 23.06 -2    21685..22161    	 -	158	15603900	-	RP021	C	ATP SYNTHASE B  CHAIN  (atpX)	
20	 36.44 +1    22174..22398    	 -	74	15603901	-	RP022	C	ATP SYNTHASE C CHAIN (atpE)	
21	 28.26       22432..23160    	 -	242	15603902	-	RP023	C	ATP SYNTHASE A CHAIN (atpB)	
22	 24.90 -1    23165..23413    	 -	82	15603903	-	RP024	-	unknown	
23	 27.96       23465..24283    	 -	272	15603904	-	RP025	O	unknown	
24	 33.33       24374..24979    	 +	201	15603905	-	RP026	K	unknown	
25	 26.88       25233..25991    	 -	252	15603906	-	RP027	-	unknown	
26	 30.15       26086..26838    	 -	250	15603907	-	RP028	Q	unknown	
27	 28.53       27089..28171    	 -	360	15603908	-	RP029	L	RECF PROTEIN (recF)	
28	 28.64       30132..30791    	 -	219	15603909	-	RP030	-	unknown	
29	 24.48 -1    32622..33197    	 +	191	15603910	-	RP031	R	SCO2 PROTEIN PRECURSOR (sco2)	
30	 30.18       33213..33782    	 -	189	15603911	-	RP032	K	unknown	
31	 24.51 -1    33843..34499    	 +	218	15603912	-	RP033	-	unknown	
32	 30.91       34755..36077    	 -	440	15603913	-	RP034	-	unknown	
33	 33.06       36622..37347    	 -	241	15603914	-	RP035	Q	ACETOACETYL-COA REDUCTASE  (phbB)	
34	 34.03 +1    38374..40950    	 +	858	15603915	-	RP036	O	CLPB PROTEIN (clpB)	
35	 31.53       41533..42696    	 -	387	15603916	-	RP037	O	PROBABLE O-SIALOGLYCOPROTEIN ENDOPEPTIDASE (gcp)	
36	 29.80       42820..44007    	 -	395	15603917	-	RP038	I	ACYL-COA DESATURASE 1 (aco1)	
37	 26.50 -1    44799..45164    	 +	121	15603918	-	RP039	J	30S RIBOSOMAL PROTEIN S6 (rpsF)	
38	 31.60       45189..45476    	 +	95	15603919	-	RP040	J	30S RIBOSOMAL PROTEIN S18 (rpsR)	
39	 29.46       45488..46003    	 +	171	15603920	-	RP041	J	50S RIBOSOMAL PROTEIN L9 (rplI)	
40	 26.30 -1    46162..47454    	 +	430	15603921	-	RP042	D	CELL CYCLE PROTEIN MESJ (mesJ)	
41	 36.10 +1    47505..49418    	 +	637	15603922	-	RP043	O	CELL DIVISION PROTEIN FTSH  (ftsH)	
42	 35.75 +1    49663..50448    	 +	261	15603923	-	RP044	C	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN (sdhB)	
43	 29.25       50908..51984    	 -	358	15603924	-	RP045	S	unknown	
44	 29.12       51963..52769    	 -	268	15603925	-	RP046	M	PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE (lgt)	
45	 26.14 -1    52968..54134    	 +	388	15603926	-	RP047	M	unknown	
46	 28.40       54283..55965    	 +	560	15603927	-	RP048	N	60 KD INNER-MEMBRANE PROTEIN (yidC)	
47	 26.56 -1    55965..56510    	 +	181	15603928	-	RP049	I	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE (pgsA)	
48	 28.87       56520..57101    	 +	193	15603929	-	RP050	-	unknown	
49	 26.56 -1    57171..57554    	 -	127	15603930	-	RP051	-	unknown	
50	 28.62       58644..58919    	 -	91	15603931	-	RP052	-	unknown	
51	 29.53       59296..60792    	 +	498	15603932	-	RP053	C	ADP,ATP CARRIER PROTEIN (tlc1)	
52	 33.26       60865..62154    	 +	429	15603933	-	RP054	G	GLYCEROL-3-PHOSPHATE TRANSPORTER (glpT)	
53	 30.97       62317..62739    	 +	140	15603934	-	RP055	F	NUCLEOSIDE DIPHOSPHATE KINASE (ndk)	
54	 31.19       62743..64608    	 +	621	15603935	-	RP056	D	GLUCOSE INHIBITED DIVISION PROTEIN A (gidA)	
55	 23.44 -1    64592..65167    	 +	191	15603936	-	RP057	M	GLUCOSE INHIBITED DIVISION PROTEIN B (gidB)	
56	 26.95       65164..65931    	 +	255	15603937	-	RP058	D	SOJ PROTEIN (soj)	
57	 26.83       65918..66778    	 +	286	15603938	-	RP059	K	STAGE 0 SPORULATION PROTEIN J (spo0J)	
58	 29.50       66950..68617    	 +	555	15603939	-	RP060	R	ABC TRANSPORTER ATP-BINDING PROTEIN (abcT1)	
59	 19.22 -2    68678..68932    	 +	84	15603940	-	RP061	-	unknown	
60	 31.64       68967..69794    	 +	275	15603941	-	RP062	M	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (kdsA)	
61	 30.33       71334..71666    	 -	110	15603942	-	RP063	S	HESB PROTEIN (hesB1)	
62	 30.12       71916..73067    	 +	383	15603943	-	RP064	F	DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE (dgtP)	
63	 32.06       73076..74806    	 +	576	15603944	-	RP065	J	ARGINYL-TRNA SYNTHETASE (argS)	
64	 28.40       74869..75537    	 +	222	15603945	-	RP066	-	unknown	
65	 32.88       75660..77876    	 +	738	15603946	-	RP067	L	TOPOISOMERASE IV SUBUNIT A (parC)	
66	 32.96       78218..79540    	 -	440	15603947	-	RP068	-	unknown	
67	 32.10       79807..80373    	 +	188	15603948	-	RP069	F	DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE (dcd)	
68	 29.63       80570..81028    	 +	152	15603949	-	RP070	N	PROTEIN-EXPORT PROTEIN SECB (secB)	
69	 30.81       81225..81938    	 +	237	15603950	-	RP071	T	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR)	
70	 27.01       81942..82763    	 +	273	15603951	-	RP072	R	unknown	
71	 32.26       82791..83351    	 -	186	15603952	-	RP073	S	unknown	
72	 33.26       83408..84805    	 -	465	15603953	-	RP074	C	NAD(P) TRANSHYDROGENASE SUBUNIT BETA (pntB)	
73	 30.72       84904..85707    	 -	267	15603954	-	RP075	M	unknown	
74	 32.43       85783..86667    	 +	294	15603955	-	RP076	G	unknown	
75	 30.39       86654..87910    	 +	418	15603956	-	RP077	G	PROLINE/BETAINE TRANSPORTER (proP1)	
76	 30.03       88164..88466    	 +	100	15603957	-	RP079	N	PROTEIN-EXPORT MEMBRANE PROTEIN SECG (secG)	
77	 24.84 -1    88459..88611    	 -	50	15603958	-	RP080	-	unknown	
78	 28.27       89074..90099    	 -	341	15603959	-	RP081	-	190 KD ANTIGEN PRECURSOR (sca2)	
79	 30.79       90112..90543    	 -	143	15603960	-	RP082	-	unknown	
80	 26.31 -1    90485..92050    	 -	521	15603961	-	RP083	-	unknown	
81	 31.12       92196..92693    	 -	165	15603962	-	RP084	-	unknown	
82	 31.15       94769..96142    	 +	457	15603963	-	RP085	J	CYSTEINYL-TRNA SYNTHETASE (cysS)	
83	 31.54       96550..97440    	 +	296	15603964	-	RP086	J	30S RIBOSOMAL PROTEIN S2 (rpsB)	
84	 30.54       97595..98524    	 +	309	15603965	-	RP087	J	ELONGATION FACTOR TS (tsf)	
85	 29.44       98802..98981    	 +	59	15603966	-	RP088	-	unknown	
86	 29.15       99717..101102   	 -	461	15603967	-	RP089	M	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE (kdtA)	
87	 28.92      101099..101755   	 -	218	15603968	-	RP090	S	unknown	
88	 32.45      101880..103118   	 -	412	15603969	-	RP091	E	ASPARTATE AMINOTRANSFERASE A (aatA)	
89	 21.79 -2   103293..104297   	 +	334	15603970	-	RP092	R	unknown	
90	 32.01      104302..105057   	 +	251	15603971	-	RP093	M	VACJ LIPOPROTEIN PRECURSOR (vacJ)	
91	 28.50      105077..105676   	 +	199	15603972	-	RP094	N	unknown	
92	 32.76      106459..107673   	 +	404	15603973	-	RP095	M	ALANINE RACEMASE  (alr)	
93	 32.82      107825..108604   	 +	259	15603974	-	RP096	R	unknown	
94	 31.09      108607..109365   	 +	252	15603975	-	RP097	N	POSSIBLE RIBONUCLEOTIDE TRANSPORT ATP-BINDING PROTEIN MKL (mkl)	
95	 24.21 -1   109367..109618   	 +	83	15603976	-	RP098	-	unknown	
96	 31.29      111301..111594   	 +	97	15603977	-	RP099	J	50S RIBOSOMAL PROTEIN L28 (rpmB)	
97	 31.22      111591..111827   	 +	78	15603978	-	RP100	J	50S RIBOSOMAL PROTEIN L31 (rpmE)	
98	 28.99      112320..112964   	 +	214	15603979	-	RP102	R	unknown	
99	 32.09      114023..116440   	 +	805	15603980	-	RP103	N	VIRB4 PROTEIN PRECURSOR (virB4)	
100	 33.13      116558..119932   	 +	1124	15603981	-	RP104	N	unknown	

 
 30.02 MEAN 
 
 3.37  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.