IslandPath Analysis: Rickettsia conorii Malish 7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.03   STD DEV: 4.13
Rickettsia conorii Malish 7, complete genome - 0..1268755
1374 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 28.71           1..822      	 +	273	15891924	-	RC0001	-	unknown	
2	 29.56        1039..1356     	 +	105	15891925	trxA	RC0002	-	thioredoxin	
3	 29.60        1367..2116     	 +	249	15891926	rfbE	RC0003	-	O-antigen export system ATP-binding protein RfbE	
4	 29.09        2117..2893     	 +	258	15891927	rfbA	RC0004	-	O-antigen export system permease protein RfbA	
5	 32.72        2890..5991     	 +	1033	15891928	-	RC0005	-	unknown	
6	 32.51        6035..6277     	 -	80	15891929	-	RC0006	-	unknown	
7	 29.08        6299..6580     	 -	93	15891930	-	RC0007	-	unknown	
8	 36.98 +1     6611..7405     	 -	264	15891931	lpxA	RC0008	-	acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase [EC:2.3.1.129]	
9	 35.84        7413..7850     	 -	145	15891932	fabZ	RC0009	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [EC:4.2.1.-]	
10	 35.45        8046..9086     	 -	346	15891933	lpxD	RC0010	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.-]	
11	 39.41 +1     9922..10941    	 +	339	15891934	nifR3	RC0011	-	nifR3-like protein	
12	 28.57       10959..11882    	 +	307	15891935	-	RC0012	-	unknown	
13	 29.55       12114..12641    	 -	175	15891936	-	RC0013	-	unknown	
14	 30.92       12629..13582    	 -	317	15891937	znuA	RC0014	-	zinc/manganese ABC transporter substrate binding protein	
15	 31.05       13579..14889    	 -	436	15891938	pcnB	RC0015	-	poly(A) polymerase [EC:2.7.7.19]	
16	 32.00       15379..15603    	 -	74	15891939	-	RC0016	-	unknown	
17	 32.93       15687..16421    	 -	244	15891940	-	RC0017	-	similarity to competence locus E protein 3	
18	 33.73       16433..16681    	 -	82	15891941	-	RC0018	-	unknown	
19	 33.58       17298..23006    	 +	1902	15891942	sca1	RC0019	-	cell surface antigen	
20	 35.96       23481..23747    	 +	88	15891943	-	RC0020	-	unknown	
21	 26.16 -1    24352..24978    	 +	208	15891944	-	RC0021	-	unknown	
22	 22.40 -2    25436..25618    	 +	60	15891945	-	RC0022	-	unknown	
23	 30.88       25983..26186    	 +	67	15891946	-	RC0023	-	unknown	
24	 30.10       26192..26686    	 -	164	15891947	atpF	RC0024	-	ATP synthase B chain precursor [EC:3.6.1.34]	
25	 25.53 -1    26686..27159    	 -	157	15891948	atpX	RC0025	-	ATP synthase B chain	
26	 37.13 +1    27178..27414    	 -	78	15891949	atpE	RC0026	-	ATP synthase C chain [EC:3.6.1.34]	
27	 30.45       27598..28326    	 -	242	15891950	atpB	RC0027	-	ATP synthase A chain [EC:3.6.1.34]	
28	 29.63       28331..28627    	 -	98	15891951	-	RC0028	-	unknown	
29	 30.94       28705..29538    	 -	277	15891952	-	RC0029	-	unknown	
30	 35.44       29703..30224    	 +	173	15891953	-	RC0030	-	unknown	
31	 31.90       30471..32075    	 -	534	15891954	-	RC0031	-	unknown	
32	 31.30       32500..33582    	 -	360	15891955	recF	RC0032	-	RecF protein	
33	 30.69       33606..33908    	 -	100	15891956	-	RC0033	-	similarity to coenzyme PQQ synthesis protein c	
34	 26.46 -1    34249..34743    	 -	164	15891957	folA	RC0034	-	dihydrofolate reductase [EC:1.5.1.3]	
35	 25.82 -1    34740..35045    	 -	101	15891958	-	RC0035	-	similarity to folate synthesis bifunctional protein	
36	 26.30 -1    34957..35226    	 -	89	15891959	-	RC0036	-	similarity to folate synthesis bifunctional protein	
37	 32.86       35416..35838    	 -	140	15891960	-	RC0037	-	similarity to folate synthesis bifunctional protein	
38	 27.08 -1    35819..36058    	 -	79	15891961	-	RC0038	-	similarity to folate synthesis bifunctional protein	
39	 30.49       36524..37192    	 -	222	15891962	-	RC0039	-	unknown	
40	 27.67 -1    37792..38109    	 -	105	15891963	-	RC0040	-	unknown	
41	 25.19 -1    38531..38800    	 -	89	15891964	-	RC0041	-	unknown	
42	 26.17 -1    40072..40671    	 +	199	15891965	sco2	RC0042	-	sco2 protein precursor	
43	 31.58       40682..41251    	 -	189	15891966	-	RC0043	-	unknown	
44	 26.76 -1    41317..41985    	 +	222	15891967	-	RC0044	-	unknown	
45	 33.33       42377..42703    	 -	108	15891968	-	RC0045	-	unknown	
46	 35.02       42551..43378    	 +	275	15891969	-	RC0046	-	unknown	
47	 37.22 +1    43432..43611    	 +	59	15891970	-	RC0047	-	unknown	
48	 34.32       43865..45187    	 -	440	15891971	-	RC0048	-	unknown	
49	 29.52       45197..45721    	 -	174	15891972	-	RC0049	-	unknown	
50	 30.60       45699..46100    	 -	133	15891973	-	RC0050	-	unknown	
51	 31.07       46024..46377    	 -	117	15891974	-	RC0051	-	unknown	
52	 31.31       46518..46715    	 -	65	15891975	-	RC0052	-	unknown	
53	 31.96       46780..46998    	 -	72	15891976	-	RC0053	-	unknown	
54	 36.23 +1    47153..47878    	 -	241	15891977	phbB	RC0054	-	acetoacetyl-CoA reductase [EC:1.1.1.100]	
55	 31.25       48036..48323    	 -	95	15891978	-	RC0055	-	unknown	
56	 31.30       48478..49068    	 -	196	15891979	-	RC0056	-	unknown	
57	 30.43       49114..49389    	 -	91	15891980	-	RC0057	-	unknown	
58	 30.30       49383..49778    	 -	131	15891981	-	RC0058	-	unknown	
59	 36.79 +1    49891..52464    	 +	857	15891982	clpB	RC0059	-	clpB protein	
60	 25.61 -1    52705..53196    	 -	163	15891983	-	RC0060	-	unknown	
61	 34.20       53323..54357    	 -	344	15891984	gcp	RC0061	-	sialoglycoprotease [EC:3.4.24.57]	
62	 31.32       54469..55662    	 -	397	15891985	aco1	RC0062	-	acyl-CoA desaturase 1	
63	 29.03       55790..56161    	 -	123	15891986	-	RC0063	-	similarity to transcriptional regulator	
64	 25.80 -1    56522..56959    	 +	145	15891987	rpsF	RC0064	-	30S ribosomal protein S6	
65	 31.94       56984..57271    	 +	95	15891988	rpsR	RC0065	-	30S ribosomal protein S18	
66	 30.04       57283..57798    	 +	171	15891989	rplI	RC0066	-	50S ribosomal protein L9	
67	 30.69       58097..59533    	 +	478	15891990	mesJ	RC0067	-	cell cycle protein MesJ	
68	 37.62 +1    59634..61547    	 +	637	15891991	ftsH	RC0068	-	cell division protein ftsH [EC:3.4.24.-]	
69	 36.51 +1    62230..63015    	 +	261	15891992	sdhB	RC0069	-	succinate dehydrogenase iron-sulfur protein [EC:1.3.99.1]	
70	 35.26       63304..63459    	 +	51	15891993	-	RC0070	-	unknown	
71	 33.42       63599..64819    	 -	406	15891994	-	RC0071	-	unknown	
72	 31.41       64798..65577    	 -	259	15891995	lgt	RC0072	-	prolipoprotein diacylglyceryl transferase [EC:2.4.99.-]	
73	 28.01       65822..66985    	 +	387	15891996	-	RC0073	-	unknown	
74	 30.42       67177..68859    	 +	560	15891997	yidC	RC0074	-	60 kD inner-membrane protein	
75	 29.67       68863..69408    	 +	181	15891998	pgsA	RC0075	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]	
76	 29.41       69422..69982    	 +	186	15891999	-	RC0076	-	unknown	
77	 30.71       70152..70571    	 -	139	15892000	-	RC0077	-	unknown	
78	 29.30       70755..71027    	 +	90	15892001	-	RC0078	-	similarity to BioC	
79	 33.10       71594..72442    	 +	282	15892002	-	RC0079	-	unknown	
80	 30.37       72659..73333    	 -	224	15892003	def3	RC0080	-	polypeptide deformylase [EC:3.5.1.31]	
81	 31.80       73532..75028    	 +	498	15892004	tlc1	RC0081	-	ADP,ATP carrier protein	
82	 35.03       75225..76520    	 +	431	15892005	glpT	RC0082	-	glycerol-3-phosphate transporter	
83	 32.62       76545..76967    	 +	140	15892006	ndk	RC0083	-	nucleoside diphosphate kinase [EC:2.7.4.6]	
84	 32.80       76971..78839    	 +	622	15892007	gidA	RC0084	-	glucose inhibited division protein A	
85	 25.39 -1    78820..79398    	 +	192	15892008	gidB	RC0085	-	glucose inhibited division protein B	
86	 28.26       79395..80162    	 +	255	15892009	soj	RC0086	-	soj protein	
87	 27.76 -1    80149..81009    	 +	286	15892010	spo0J	RC0087	-	stage 0 sporulation protein J	
88	 29.80       81267..82934    	 +	555	15892011	abcT1	RC0088	-	ABC transporter ATP-binding protein	
89	 21.07 -2    82937..83254    	 +	105	15892012	-	RC0089	-	unknown	
90	 35.39       83290..84114    	 +	274	15892013	kdsA	RC0090	-	2-dehydro-3-deoxyphosphooctonate aldolase [EC:4.1.2.16]	
91	 30.56       84596..85135    	 +	179	15892014	-	RC0091	-	unknown	
92	 29.22       85273..85491    	 +	72	15892015	-	RC0092	-	similarity to cation efflux system protein	
93	 34.53       85658..85990    	 -	110	15892016	hesB1	RC0093	-	hesB protein	
94	 33.25       86219..87373    	 +	384	15892017	dgtP	RC0094	-	deoxyguanosinetriphosphate triphosphohydrolase [EC:3.1.5.1]	
95	 33.28       87487..89217    	 +	576	15892018	argS	RC0095	-	arginyl-tRNA synthetase [EC:6.1.1.19]	
96	 29.19       89390..90064    	 +	224	15892019	-	RC0096	-	unknown	
97	 35.72       90242..92458    	 +	738	15892020	parC	RC0097	-	topoisomerase IV subunit A [EC:5.99.1.-]	
98	 35.38       93159..94475    	 -	438	15892021	-	RC0098	-	unknown	
99	 33.51       94755..95327    	 +	190	15892022	dcd	RC0099	-	deoxycytidine triphosphate deaminase [EC:3.5.4.13]	
100	 32.24       95373..95831    	 +	152	15892023	secB	RC0100	-	protein-export protein secB	

 
 32.03 MEAN 
 
 4.13  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.