IslandPath Analysis: Ralstonia solanacearum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.98   STD DEV: 4.55
Ralstonia solanacearum, complete genome - 0..3716413
3440 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 63.70         486..620      	 +	44	17544720	rpmH	RSc0001	-	PROBABLE 50S RIBOSOMAL PROTEIN L34	
2	 68.69         718..1113     	 +	131	17544721	rnpA	RSc0002	-	PROBABLE RIBONUCLEASE P PROTEIN COMPONENT	
3	 68.25        1110..1424     	 +	104	17544722	RSc0003	RS01825	-	CONSERVED HYPOTHETICAL PROTEIN	
4	 65.76        1431..3092     	 +	553	17544723	RSc0004	RS01826	-	PROBABLE TRANSMEMBRANE PROTEIN	
5	 70.40        3222..4667     	 +	481	17544724	thdF	RSc0005	-	PROBABLE THIOPHENE AND FURAN OXIDATION PROTEIN	
6	 65.43        4757..5080     	 +	107	17544725	RSc0006	RS01828	-	CONSERVED HYPOTHETICAL PROTEIN	
7	 66.67        5188..5721     	 +	177	17544726	RSc0007	RS01829	-	HYPOTHETICAL PROTEIN	
8	 63.38        6204..6416     	 -	70	17544727	rpsU	RSc0008	-	PROBABLE 30S RIBOSOMAL SUBUNIT PROTEIN S21	
9	 69.64        6899..8443     	 -	514	17544728	RSc0009	RS01831	-	PROBABLE DRUG EFFLUX LIPOPROTEIN	
10	 65.87        8446..11595    	 -	1049	17544729	acrB	RSc0010	-	PUTATIVE ACRIFLAVIN RESISTANCE TRANSMEMBRANE PROTEIN	
11	 70.68       11621..12817    	 -	398	17544730	acrA	RSc0011	-	PROBABLE ACRIFLAVIN RESISTANCE LIPOPROTEIN A PRECURSOR	
12	 65.61       13346..14005    	 +	219	17544731	acrR	RSc0012	-	PUTATIVE ACRAB OPERON REPRESSOR TRANSCRIPTION REGULATOR PROTEIN	
13	 71.36       14002..14895    	 +	297	17544732	RSc0013	RS01835	-	HYPOTHETICAL PROTEIN	
14	 73.58 +1    14967..16412    	 +	481	17544733	gor	RSc0014	-	PROBABLE GLUTATHIONE REDUCTASE OXIDOREDUCTASE PROTEIN	
15	 72.50 +1    16566..17456    	 +	296	17544734	RSc0015	RS01837	-	CONSERVED HYPOTHETICAL PROTEIN	
16	 66.01       17482..18543    	 -	353	17544735	serA1	RSc0016	-	PUTATIVE D-3-PHOSPHOGLYCERATE DEHYDROGENASE OXIDOREDUCTASE PROTEIN	
17	 67.31       18932..20800    	 +	622	17544736	pckA	RSc0017	-	PROBABLE PHOSPHOENOLPYRUVATE CARBOXYKINASE PROTEIN	
18	 69.52       21645..22484    	 +	279	17544737	RSc0018	RS01840	-	PROBABLE RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN	
19	 66.67       22608..23075    	 +	155	17544738	RSc0019	RS01841	-	HYPOTHETICAL PROTEIN	
20	 68.95       23149..23937    	 -	262	17544739	RSc0020	RS01842	-	CONSERVED HYPOTHETICAL PROTEIN	
21	 71.58 +1    24619..26082    	 -	487	17544740	RSc0021	RS01843	-	PROBABLE TRANSMEMBRANE SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN	
22	 66.72       26383..28443    	 +	686	17544741	cstA	RSc0022	-	PROBABLE CARBON STARVATION A TRANSMEMBRANE PROTEIN	
23	 63.08       28493..28687    	 +	64	17544742	RSc0023	RS01845	-	CONSERVED HYPOTHETICAL PROTEIN	
24	 72.20 +1    28773..29531    	 -	252	17544743	RSc0024	RS01846	-	PUTATIVE SIGNAL PEPTIDE PROTEIN	
25	 65.90       29697..30218    	 -	173	17544744	RSc0025	RS01848	-	CONSERVED HYPOTHETICAL PROTEIN	
26	 68.21       30445..31092    	 -	215	17544745	RSc0026	RS01849	-	CONSERVED HYPOTHETICAL PROTEIN	
27	 68.23       31089..32300    	 -	403	17544746	metX	RSc0027	-	PROBABLE HOMOSERINE O-ACETYLTRANSFERASE PROTEIN	
28	 71.75 +1    32580..34073    	 -	497	17544747	gabD1	RSc0028	-	PROBABLE SUCCINATE-SEMIALDEHYDE DEHYDROGENASE OXIDOREDUCTASE PROTEIN	
29	 69.24       34078..35358    	 -	426	17544748	goaG	RSc0029	-	PROBABLE 4-AMINOBUTYRATE AMINOTRANSFERASE PROTEIN	
30	 72.48 +1    35476..37005    	 +	509	17544749	RSc0030	RS01853	-	PUTATIVE TRANSCRIPTION REGULATOR PROTEIN	
31	 70.02       37200..37856    	 -	218	17544750	RSc0031	RS01854	-	PROBABLE TRANSCRIPTION REGULATOR PROTEIN	
32	 71.88 +1    37895..38758    	 -	287	17544751	RSc0032	RS01855	-	HYPOTHETICAL PROTEIN	
33	 64.09       38758..39690    	 -	310	17544752	argB	RSc0033	-	PROBABLE ACETYLGLUTAMATE KINASE PROTEIN	
34	 68.18       39866..40459    	 +	197	17544753	RSc0034	RS01857	-	PROBABLE ECF-FAMILY RNA POLYMERASE SIGMA FACTOR TRANSCRIPTION REGULATOR PROTEIN	
35	 68.69       40490..40687    	 +	65	17544754	RSc0035	RS01858	-	CONSERVED HYPOTHETICAL PROTEIN	
36	 80.66 +2    40687..40929    	 +	80	17544755	RSc0036	RS01859	-	PUTATIVE SIGNAL PEPTIDE PROTEIN	
37	 69.91       40971..41186    	 -	71	17544756	RSc0037	RS01860	-	HYPOTHETICAL PROTEIN	
38	 70.63       41235..41738    	 -	167	17544757	RSc0038	RS01861	-	PUTATIVE TRANSMEMBRANE PROTEIN	
39	 71.34       41881..43227    	 +	448	17544758	RSc0039	RS01862	-	PROBABLE TRANSMEMBRANE SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN	
40	 71.50       43274..43852    	 +	192	17544759	RSc0040	RS01863	-	PROBABLE RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN	
41	 64.66       44050..45342    	 +	430	17544760	RSc0041	RS01864	-	HYPOTHETICAL PROTEIN	
42	 65.84       45560..46891    	 -	443	17544761	hslU	RSc0042	-	PROBABLE HEAT SHOCK PROTEIN CHAPERONE	
43	 67.41       46926..47462    	 -	178	17544762	hslV	RSc0043	-	PROBABLE HEAT SHOCK PROTEIN	
44	 69.11       47608..49200    	 -	530	17544763	RSc0044	RS01867	-	PROBABLE SUBSTRATE-BINDING PERIPLASMIC (PBP) ABC TRANSPORTER PROTEIN	
45	 70.98       49301..50575    	 -	424	17544764	RSc0045	RS01868	-	CONSERVED HYPOTHETICAL PROTEIN	
46	 63.33       50669..51088    	 -	139	17544765	dksA	RSc0046	-	PUTATIVE DNAK SUPPRESSOR PROTEIN	
47	 65.11       51498..52586    	 -	362	17544766	RSc0047	RS01870	-	CONSERVED HYPOTHETICAL PROTEIN	
48	 73.22 +1    52574..53092    	 -	172	17544767	RSc0048	RS01871	-	PUTATIVE TRANSCRIPTION REGULATOR PROTEIN	
49	 72.16 +1    53181..54437    	 -	418	17544768	RSc0049	RS01872	-	PUTATIVE HEMAGGLTININ-RELATED PROTEIN	
50	 69.35       54450..55976    	 -	508	17544769	RSc0050	RS01873	-	CONSERVED HYPOTHETICAL PROTEIN	
51	 71.44       56123..57316    	 -	397	17544770	RSc0051	RS01874	-	CONSERVED HYPOTHETICAL PROTEIN	
52	 71.31       57356..58345    	 -	329	17544771	RSc0052	RS01875	-	PROBABLE SITE SPECIFIC INTEGRASE/RECOMBINASE PROTEIN	
53	 70.03       58359..59072    	 -	237	17544772	RSc0053	RS01876	-	CONSERVED HYPOTHETICAL PROTEIN	
54	 67.42       59072..60538    	 -	488	17544773	gatB	RSc0054	-	PROBABLE GLU-TRNAGLN AMIDOTRANSFERASE SUBUNIT B PROTEIN	
55	 75.36 +1    60624..61601    	 -	325	17544774	RSc0055	RS01878	-	HYPOTHETICAL SIGNAL PEPTIDE PROTEIN	
56	 68.66       61580..62080    	 -	166	17544775	RSc0056	RS01879	-	PROBABLE LIPOPROTEIN	
57	 70.36       62121..63608    	 -	495	17544776	gatA	RSc0057	-	PROBABLE GLU-TRNA (GLN) AMIDOTRANSFERASE (SUBUNIT A) PROTEIN	
58	 67.33       63700..63999    	 -	99	17544777	gatC	RSc0058	-	PROBABLE GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT C PROTEIN	
59	 66.09       64477..65520    	 +	347	17544778	mreB	RSc0059	-	PROBABLE ROD SHAPE-DETERMINING PROTEIN	
60	 72.53 +1    65698..66738    	 +	346	17544779	mreC	RSc0060	-	PROBABLE ROD SHAPE-DETERMINING MREC TRANSMEMBRANE PROTEIN	
61	 67.45       66750..67262    	 +	170	17544780	mreD	RSc0061	-	PROBABLE ROD SHAPE-DETERMINING MRED TRANSMEMBRANE PROTEIN	
62	 69.62       67285..69690    	 +	801	17544781	RSc0062	RS05767	-	PROBABLE SUBSTRATE-BINDING TRANSMEMBRANE PROTEIN	
63	 65.97       69714..70856    	 +	380	17544782	mdrB	RSc0063	-	PROBABLE ROD SHAPE-DETERMINING (RODA PROTEIN) TRANSMEMBRANE	
64	 69.99       70887..72692    	 -	601	17544783	RSc0064	RS05769	-	PUTATIVE LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEIN	
65	 67.09       73037..73975    	 +	312	17544784	RSc0065	RS02244	-	PROBABLE TRANSCRIPTION REGULATOR PROTEIN	
66	 65.22       74076..76709    	 -	877	17544785	topB	RSc0066	-	PROBABLE DNA TOPOISOMERASE III PROTEIN	
67	 70.00       76940..77329    	 -	129	17544786	RSc0067	RS02246	-	PUTATIVE THIOREDOXIN-LIKE PROTEIN	
68	 72.31 +1    77370..78575    	 -	401	17544787	smf	RSc0068	-	PROBABLE SMF PROTEIN	
69	 69.14       78593..79765    	 -	390	17544788	RSc0069	RS02271	-	PROBABLE SIGNAL PEPTIDE PROTEIN	
70	 63.53       80019..80528    	 +	169	17544789	def	RSc0070	-	PROBABLE POLYPEPTIDE DEFORMYLASE PROTEIN	
71	 70.75       80567..82549    	 +	660	17544790	RSc0071	RS02249	-	PROBABLE TRANSMEMBRANE PROTEIN	
72	 72.56 +1    82595..83578    	 +	327	17544791	fmt	RSc0072	-	PROBABLE METHIONYL-TRNA FORMYLTRANSFERASE PROTEIN	
73	 69.14       83613..84260    	 +	215	17544792	RSc0073	RS02251	-	PROBABLE TRANSPORTER TRANSMEMBRANE PROTEIN	
74	 67.60       84379..85239    	 +	286	17544793	htpX	RSc0074	-	PROBABLE METALLOPROTEASE ZINC TRANSMEMBRANE PROTEIN	
75	 71.49       85330..86655    	 +	441	17544794	rrmB	RSc0075	-	PUTATIVE RNA METHYLTRANSFERASE (SUN PROTEIN)	
76	 69.39       86708..87478    	 +	256	17544795	RSc0076	RS02253	-	PROBABLE PROLINE RICH SIGNAL PEPTIDE PROTEIN	
77	 68.47       87475..89910    	 +	811	17544796	RSc0077	RS02275	-	PROBABLE TWO COMPONENT SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN	
78	 67.22       89947..90666    	 +	239	17544797	RSc0078	RS02276	-	PROBABLE TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN	
79	 59.76 -1    91044..93431    	 +	795	17544798	RSc0079	RS02277	-	PROBABLE TRANSMEMBRANE PROTEIN	
80	 65.03       93670..93975    	 +	101	17544799	RSc0080	RS02254	-	PROBABLE TRANSMEMBRANE PROTEIN	
81	 71.21       94180..95082    	 +	300	17544800	RSc0081	RS02255	-	CONSERVED HYPOTHETICAL PROTEIN	
82	 71.54 +1    95113..96465    	 +	450	17544801	RSc0082	RS02256	-	PUTATIVE AMINOTRANSFERASE PROTEIN	
83	 73.88 +1    96462..97307    	 +	281	17544802	RSc0083	RS02257	-	CONSERVED HYPOTHETICAL PROTEIN	
84	 63.69       97383..98288    	 +	301	17544803	RSc0084	RS02258	-	PROBABLE AMINO-ACID-BINDING PERIPLASMIC (PBP) ABC TRANSPORTER PROTEIN	
85	 73.18 +1    98292..99581    	 -	429	17544804	cca	RSc0085	-	PROBABLE TRNA NUCLEOTIDYLTRANSFERASE PROTEIN	
86	 68.12       99578..100267   	 -	229	17544805	RSc0086	RS02260	-	CONSERVED HYPOTHETICAL PROTEIN	
87	 71.94 +1   100460..101464   	 -	334	17544806	RSc0087	RS02261	-	PUTATIVE NADH-UBIQUINONE OXIDOREDUCTASE OXIDOREDUCTASE PROTEIN	
88	 68.66      101627..103579   	 -	650	17544807	slt	RSc0088	-	PROBABLE SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE PRECURSOR TRANSMEMBRANE PROTEIN	
89	 72.44 +1   103618..104223   	 +	201	17544808	RSc0089	RS02262	-	CONSERVED HYPOTHETICAL PROTEIN	
90	 73.20 +1   104315..104773   	 -	152	17544809	RSc0090	RS02263	-	HYPOTHETICAL PROTEIN	
91	 67.27      104782..105612   	 -	276	17544810	metF	RSc0091	-	PROBABLE 5,10-METHYLENETETRAHYDROFOLATE REDUCTASE OXIDOREDUCTASE PROTEIN	
92	 61.11 -1   105626..105967   	 -	113	17544811	RSc0092	RS02279	-	PROBABLE TRANSMEMBRANE PROTEIN	
93	 64.28      106034..107458   	 -	474	17544812	ahcY	RSc0093	-	PROBABLE ADENOSYLHOMOCYSTEINASE (S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE) PROTEIN	
94	 57.79 -2   107707..108258   	 -	183	17544813	RSc0094	RS02282	-	PUTATIVE LIPOPROTEIN TRANSMEMBRANE	
95	 56.02 -2   108255..108686   	 -	143	17544814	RSc0095	RS02285	-	CONSERVED HYPOTHETICAL PROTEIN	
96	 55.32 -2   108738..109019   	 +	93	17544815	RSc0096	RS06003	-	HYPOTHETICAL PROTEIN	
97	 69.70      109053..110504   	 +	483	17544816	RSc0097	RS02267	-	PUTATIVE ALKALINE PHOSPHATASE LIPOPROTEIN TRANSMEMBRANE	
98	 69.52      110524..111927   	 +	467	17544817	RSc0098	RS02280	-	PUTATIVE ALKALINE PHOSPHATASE SIGNAL PEPTIDE PROTEIN	
99	 73.53 +1   112009..112707   	 +	232	17544818	RSc0099	RS02268	-	PUTATIVE SIGNAL PEPTIDE PROTEIN	
100	 72.41 +1   112778..113683   	 +	301	17544819	thiD	RSc0100	-	PROBABLE BIFUNCTIONAL PROTEIN: HYDROXY-PHOSPHOMETHYLPYRIMIDINE KINASE AND HYDROXY-METHYLPYRIMIDINE KINASE	

 
 66.98 MEAN 
 
 4.55  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.