IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.62
Pyrococcus furiosus DSM 3638, complete genome - 0..1908256
2065 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 31.06 -2       94..927      	 -	277	18976373	-	PF0001	C	hypothetical protein	
2	 33.56 -2      939..2243     	 -	434	18976374	-	PF0002	S	hypothetical protein	
3	 30.61 -2     2240..3340     	 -	366	18976375	-	PF0003	H	moeB-like protein	
4	 33.33 -2     3353..4126     	 -	257	18976376	-	PF0004	G	hypothetical protein	
5	 32.59 -2     4123..4926     	 -	267	18976377	-	PF0005	P	ABC transporter, ATP-binding protein	
6	 37.56        5308..6300     	 +	330	18976378	-	PF0006	Q	ABC transporter (ATP-binding)	
7	 45.43 +1     6464..7951     	 +	495	18976379	-	PF0007	R	hypothetical protein	
8	 46.46 +1     8054..8548     	 +	164	18976380	-	PF0008	F	hit family protein (hit)	
9	 43.15        8538..9230     	 +	230	18976381	-	PF0009	H	thiamine biosynthesis protein	
10	 41.60        9841..10905    	 +	354	18976382	-	PF0010	E	1-aminocyclopropane-1-carboxylate deaminase	
11	 40.63       10956..11750    	 -	264	18976383	-	PF0011	S	putative ABC transporter, transmembrane component	
12	 39.93       11810..12613    	 +	267	18976384	-	PF0012	L	hypothetical protein	
13	 44.53 +1    12573..13322    	 -	249	18976385	-	PF0013	L	transposase	
14	 40.83       13350..13736    	 -	128	18976386	-	PF0014	S	hypothetical protein	
15	 44.03       13751..14479    	 -	242	18976387	-	PF0015	R	hypothetical protein	
16	 44.32       14581..15354    	 +	257	18976388	-	PF0016	F	5'-methylthioadenosine phosphorylase I	
17	 39.51       16236..17498    	 +	420	18976389	-	PF0017	L	origin recognition protein subunit 1	
18	 41.59       17498..19339    	 +	613	18976390	-	PF0018	L	DNA polymerase II subunit 1	
19	 44.73 +1    19339..23130    	 +	1263	18976391	-	PF0019	L	DNA polymerase II subunit 2	
20	 46.29 +1    23182..23814    	 +	210	18976392	-	PF0020	R	hypothetical protein	
21	 42.37       23795..24502    	 +	235	18976393	-	PF0021	L	recombinase	
22	 44.96 +1    24499..25908    	 -	469	18976394	-	PF0022	J	putative RNase E	
23	 38.74       25862..26638    	 -	258	18976395	-	PF0023	L	hypothetical protein	
24	 45.68 +1    30812..32164    	 -	450	18976396	-	PF0024	G	putative glycerate kinase	
25	 44.70 +1    32207..32998    	 +	263	18976397	-	PF0025	F	hypothetical protein	
26	 41.34       32979..34340    	 -	453	18976398	-	PF0026	J	tRNA nucleotidyltransferase (cca)	
27	 41.08       34545..35099    	 -	184	18976399	-	PF0027	J	putative integral membrane transport protein	
28	 40.62       35386..35838    	 -	150	18976400	-	PF0028	K	putative acetyl transferase	
29	 41.00       35819..37252    	 -	477	18976401	-	PF0029	-	hypothetical protein	
30	 44.17       37233..38330    	 -	365	18976402	-	PF0030	S	hypothetical protein	
31	 39.02       38333..39247    	 -	304	18976403	-	PF0031	E	threonine synthase	
32	 40.35       39735..40019    	 +	94	18976404	-	PF0032	G	hypothetical protein	
33	 44.06       40169..40429    	 -	86	18976405	-	PF0033	-	hypothetical protein	
34	 38.17       40405..40983    	 -	192	18976406	-	PF0034	-	hypothetical protein	
35	 42.31       41109..42077    	 +	322	18976407	-	PF0035	Q	daunorubicin resistance ATP-binding protein	
36	 43.94       42064..42855    	 +	263	18976408	-	PF0036	R	daunorubicin resistance membrane protein	
37	 37.88       43228..44922    	 -	564	18976409	-	PF0037	L	hypothetical protein	
38	 41.46       44919..45509    	 -	196	18976410	-	PF0038	R	glyoxalase II family member	
39	 44.81 +1    45552..46013    	 -	153	18976411	-	PF0039	R	xanthine-guanine phosphoribosyltransferase	
40	 42.36       46038..46613    	 -	191	18976412	-	PF0040	I	type II phosphatidic acid phosphatase	
41	 42.74       46636..48378    	 -	580	18976413	-	PF0041	C	putative oxidative cyclase	
42	 42.07       48375..49118    	 -	247	18976414	-	PF0042	R	metal-dependent hydrolase	
43	 48.25 +2    49183..51636    	 -	817	18976415	-	PF0043	G	phosphoenolpyruvate synthase (pyruvate, water dikinase)	
44	 38.67       51760..53145    	 -	461	18976416	-	PF0044	M	hypothetical protein	
45	 38.65       53135..54169    	 -	344	18976417	-	PF0045	-	hypothetical protein	
46	 40.87       54156..55124    	 -	322	18976418	-	PF0046	S	hypothetical protein	
47	 38.57       55124..55792    	 -	222	18976419	-	PF0047	-	hypothetical protein	
48	 42.19       55848..56570    	 +	240	18976420	-	PF0048	R	succinoglycan biosynthesis regulator	
49	 41.94       56554..57459    	 -	301	18976421	-	PF0049	L	site-specific DNA-methyltransferase (cytosine-specific)	
50	 41.32       57460..57747    	 -	95	18976422	-	PF0050	K	DNA-directed RNA polymerase subunit l	
51	 39.24       57707..58366    	 -	219	18976423	-	PF0051	S	hypothetical protein	
52	 41.41       58363..58956    	 -	197	18976424	-	PF0052	J	hypothetical protein	
53	 42.17       58953..61463    	 -	836	18976425	-	PF0053	R	putative ATP dependent RNA helicase	
54	 36.32 -1    61472..61939    	 -	155	18976426	-	PF0054	K	transcriptional regulatory protein, asnC family	
55	 37.50       61948..62283    	 -	111	18976427	-	PF0055	T	putative HTH transcription regulator	
56	 42.82       62346..62714    	 -	122	18976428	-	PF0056	S	putative carbohydrate binding protein	
57	 41.97       62786..64441    	 +	551	18976429	-	PF0057	R	hypothetical protein	
58	 40.70       64434..65492    	 -	352	18976430	-	PF0058	M	dolichol monophosphate mannose synthase	
59	 46.05 +1    65527..66210    	 -	227	18976431	-	PF0059	J	fibrillarin-like pre-rRNA processing protein	
60	 45.16 +1    66216..67424    	 -	402	18976432	-	PF0060	J	NOP5/NOP56 related protein	
61	 41.67       67490..68041    	 -	183	18976433	-	PF0061	H	riboflavin synthase alpha chain	
62	 40.75       68034..69098    	 -	354	18976434	-	PF0062	H	riboflavin-specific deaminase	
63	 42.19       69088..69561    	 -	157	18976435	-	PF0063	H	6,7-dimethyl-8-ribityllumazine synthase	
64	 41.35       69558..70730    	 -	390	18976436	-	PF0064	H	GTP cyclohydrolase II	
65	 40.44       70838..71470    	 +	210	18976437	-	PF0065	-	hypothetical protein	
66	 37.78       71424..71558    	 -	44	18976438	-	PF0066	-	hypothetical protein	
67	 38.89       71671..72156    	 -	161	18976439	-	PF0067	P	cobalt transport ABC transporter, integral membrane component	
68	 41.38       72153..72935    	 -	260	18976440	-	PF0068	P	cobalt transport ATP-binding protein	
69	 44.59 +1    72993..73694    	 -	233	18976441	-	PF0069	L	transposase	
70	 40.64       73872..74774    	 +	300	18976442	-	PF0070	S	hypothetical protein	
71	 43.14       74780..76492    	 +	570	18976443	-	PF0071	J	hypothetical protein	
72	 39.28       76489..77631    	 -	380	18976444	-	PF0072	-	hypothetical protein	
73	 43.27       78019..79437    	 -	472	18976445	-	PF0073	G	beta-glucosidase	
74	 43.65       79562..80317    	 +	251	18976446	-	PF0074	Q	alcohol dehydrogenase, short chain	
75	 43.14       80328..81500    	 +	390	18976447	-	PF0075	C	alcohol dehydrogenase	
76	 40.83       81513..82406    	 +	297	18976448	-	PF0076	G	endo-beta-1,3-glucanase	
77	 42.80       82448..83155    	 +	235	18976449	-	PF0077	H	biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase	
78	 38.50       83138..84046    	 -	302	18976450	-	PF0078	G	2-phosphoglycerate kinase	
79	 40.43       84030..85325    	 -	431	18976451	-	PF0079	R	cyclic 2,3-diphospoglycerate-synthetase	
80	 39.50       85449..86486    	 +	345	18976452	-	PF0080	P	hypothetical protein	
81	 40.53       86517..87308    	 +	263	18976453	-	PF0081	P	sulfate/thiosulfate transport protein homolog cyst	
82	 42.71       87301..88335    	 +	344	18976454	-	PF0082	E	membrane protein	
83	 42.50       88332..88844    	 -	170	18976455	-	PF0083	J	hypothetical protein	
84	 40.65       88867..88989    	 -	40	18976456	-	PF0084	-	hypothetical protein	
85	 39.09       89099..92935    	 -	1278	18976457	-	PF0085	L	putative DNA helicase	
86	 43.26       92940..93584    	 -	214	18976458	-	PF0086	R	partial alanyl-tRNA synthetase matches COOH terminus	
87	 39.51       93646..94050    	 +	134	18976459	-	PF0087	R	inosine-5'-monophosphate dehydrogenase related protein iv	
88	 39.71       94057..95562    	 +	501	18976460	-	PF0088	R	icc related protein	
89	 40.02       95567..96568    	 +	333	18976461	-	PF0089	R	met-10+ protein	
90	 39.72       96627..97550    	 +	307	18976462	-	PF0090	H	molybdenum cofactor biosynthesis protein	
91	 38.20       97598..98419    	 +	273	18976463	-	PF0091	-	hypothetical protein	
92	 41.88       98420..99859    	 -	479	18976464	-	PF0092	L	replication factor C, large subunit	
93	 41.15       99866..102424   	 -	852	18976465	-	PF0093	L	replication factor C, small subunit	
94	 41.70      102519..103199   	 -	226	18976466	-	PF0094	O	glutaredoxin-like protein	
95	 35.91 -1   103332..104030   	 +	232	18976467	-	PF0095	L	hypothetical protein	
96	 42.80      103966..104208   	 +	80	18976468	-	PF0096	C	hypothetical protein	
97	 41.37      104205..105386   	 +	393	18976469	-	PF0097	C	bacteriochlorophyll synthase, 43 kDa subunit  homolog	
98	 39.53      105370..106143   	 -	257	18976470	-	PF0098	H	NH(3)-dependent NAD+ synthetase	
99	 36.17 -1   106140..107090   	 -	316	18976471	-	PF0099	R	hypothetical protein	
100	 39.73      107145..107582   	 +	145	18976472	-	PF0100	H	molybdopterin converting factor (subunit 2)	

 
 40.87 MEAN 
 
 3.62  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.