IslandPath Analysis: Pyrobaculum aerophilum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.02
Pyrobaculum aerophilum, complete genome - 0..2222430
2605 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 56.43           1..957      	 +	318	18311644	-	PAE0001	-	conserved hypothetical protein	
2	 56.75 +1      954..1427     	 -	157	18311645	-	PAE0002	-	paREP1	
3	 56.09        1471..2397     	 -	308	18311646	-	PAE0005	-	peptidase, putative	
4	 45.25 -1     2640..3797     	 +	385	18311647	-	PAE0007	-	conserved within P. aerophilum	
5	 36.39 -2     3784..4143     	 +	119	18311648	-	PAE0008	-	hypothetical protein	
6	 51.06        4316..4456     	 -	46	18311649	-	PAE0009	-	hypothetical protein	
7	 58.89 +1     4483..5151     	 -	222	18311650	-	PAE0010	-	coenzyme PQQ synthesis protein, conjectural	
8	 50.11        5152..5586     	 -	144	18311651	-	PAE0012	-	conserved hypothetical protein	
9	 55.40        5759..6184     	 -	141	18311652	-	PAE0013	-	conserved hypothetical protein	
10	 57.41 +1     6400..7134     	 -	244	18311653	-	PAE0014	-	hypothetical protein	
11	 45.61 -1     7499..7612     	 -	37	18311654	-	PAE0015	-	hypothetical protein	
12	 46.88        7672..7767     	 -	31	18311655	-	PAE0016	-	hypothetical protein	
13	 56.54 +1     7914..8318     	 +	134	18311656	-	PAE0017	-	conserved hypothetical protein	
14	 56.60 +1     8315..9208     	 -	297	18311657	-	PAE0019	-	conserved hypothetical protein	
15	 52.12        9243..10184    	 +	313	18311658	-	PAE0020	-	binding protein, putative	
16	 53.55       10171..10818    	 +	215	18311659	-	PAE0022	-	sulfate transport system, permease protein, putative	
17	 53.73       10815..11417    	 +	200	18311660	-	PAE0023	-	sulfate transport system, ATP-binding protein, putative	
18	 61.09 +1    11425..12141    	 -	238	18311661	-	PAE0025	-	short chain dehydrogenase	
19	 47.83       12175..12450    	 -	91	18311662	-	PAE0026	-	conserved hypothetical protein	
20	 51.87       12553..13302    	 +	249	18311663	-	PAE0028	-	paREP11	
21	 55.63       13324..14655    	 +	443	18311664	-	PAE0030	-	conserved hypothetical protein	
22	 45.77 -1    14684..14884    	 +	66	18311665	-	PAE0030a	-	hypothetical protein	
23	 46.03 -1    14898..15275    	 +	125	18311666	-	PAE0033	-	conserved hypothetical protein	
24	 59.51 +1    15265..16158    	 -	297	18311667	-	PAE0034	-	homoserine kinase	
25	 55.51       16115..16786    	 -	223	18311668	-	PAE0036	-	conserved hypothetical protein	
26	 52.22       17081..18208    	 -	375	18311669	-	PAE0039	-	conserved hypothetical protein	
27	 56.68 +1    18189..20180    	 -	663	18311670	-	PAE0040	-	conserved within P. aerophilum	
28	 53.96       20180..20659    	 -	159	18311671	-	PAE0041	-	hypothetical protein	
29	 51.98       20731..21765    	 +	344	18311672	-	PAE0042	-	egghead homolog	
30	 56.30       21915..22319    	 +	134	18311673	-	PAE0044	-	conserved hypothetical protein	
31	 53.85       22291..22641    	 +	116	18311674	-	PAE0045	-	hypothetical protein	
32	 48.54       22679..23020    	 +	113	18311675	-	PAE0046	-	hypothetical protein	
33	 54.73       23050..23250    	 +	66	18311676	-	PAE0047	-	hypothetical protein	
34	 54.13       23237..24241    	 -	334	18311677	-	PAE0049	-	serine protease inhibitor (serpin)	
35	 57.99 +1    24174..24968    	 -	264	18311678	-	PAE0049a	-	hypothetical protein	
36	 39.11 -2    25140..25364    	 -	74	18311679	-	PAE0051	-	hypothetical protein	
37	 56.00       25782..27665    	 -	627	18311680	-	PAE0055	-	hypothetical protein	
38	 56.30       27665..27799    	 -	44	18311681	-	PAE0056	-	hypothetical protein	
39	 57.21 +1    27787..28992    	 -	401	18311682	-	PAE0057	-	conserved hypothetical protein	
40	 55.86       29077..30612    	 +	511	18311683	-	PAE0061	-	extracellular solute binding protein, conjectural	
41	 54.51       30629..32437    	 -	602	18311684	-	PAE0062	-	molybdenum transport system permease protein, putative	
42	 59.87 +1    32434..33477    	 -	347	18311685	-	PAE0063	-	transporter ATP-binding protein, putative	
43	 56.55 +1    33561..34796    	 +	411	18311686	-	PAE0064	-	translation initiation factor aIF-2 gamma subunit, putative	
44	 62.96 +2    34945..35025    	 -	26	18311687	-	PAE0064a	-	hypothetical protein	
45	 49.31       35047..35190    	 +	47	18311688	-	PAE0065	-	hypothetical protein	
46	 52.01       35472..36290    	 -	272	18311689	-	PAE0067	-	conserved hypothetical protein	
47	 46.78       36287..38116    	 -	609	18311690	-	PAE0068	-	helicase, probable	
48	 51.14       38113..38376    	 -	87	18311691	-	PAE0069	-	hypothetical protein	
49	 51.08       38499..39287    	 +	262	18311692	-	PAE0070	-	hypothetical protein	
50	 50.00       39500..39829    	 +	109	18311693	-	PAE0073	-	hypothetical protein	
51	 56.41       41005..41745    	 -	246	18311694	-	PAE0075	-	conserved hypothetical protein	
52	 56.25       41774..42397    	 +	207	18311695	-	PAE0077	-	hypothetical protein	
53	 53.70       42327..42704    	 -	125	18311696	-	PAE0078	-	paREP9, associated with SRSRs	
54	 57.36 +1    42689..43204    	 -	171	18311697	-	PAE0079	-	conserved hypothetical protein	
55	 53.82       43194..43481    	 -	95	18311698	-	PAE0080	-	conserved hypothetical protein	
56	 59.19 +1    43478..44386    	 -	302	18311699	-	PAE0081	-	conserved hypothetical protein	
57	 59.52 +1    44370..45236    	 -	288	18311700	-	PAE0082	-	conserved hypothetical protein	
58	 61.27 +1    46700..46903    	 +	67	18311701	-	PAE0084	-	hypothetical protein	
59	 60.74 +1    46970..47239    	 +	89	18311702	-	PAE0086	-	hypothetical protein	
60	 61.97 +2    47280..47747    	 +	155	18311703	-	PAE0087	-	hypothetical protein	
61	 60.45 +1    47753..48766    	 -	337	18311704	-	PAE0088	-	hypothetical protein	
62	 56.46       48829..48975    	 -	48	18311705	-	PAE0089	-	hypothetical protein	
63	 57.94 +1    48972..50060    	 -	362	18311706	-	PAE0090	-	conserved hypothetical protein	
64	 54.08       50152..51057    	 +	301	18311707	-	PAE0091	-	hypothetical protein	
65	 54.28       51724..52272    	 +	182	18311708	-	PAE0096	-	paREP1	
66	 40.61 -2    52315..52836    	 -	173	18311709	-	PAE0097	-	hypothetical protein	
67	 53.96       52814..53797    	 -	327	18311710	-	PAE0098	-	hypothetical protein	
68	 46.49 -1    54121..54348    	 +	75	18311711	-	PAE0100	-	conserved hypothetical protein	
69	 48.56       54323..54703    	 +	126	18311712	-	PAE0101	-	hypothetical protein	
70	 51.25       54939..55859    	 +	306	18311713	-	PAE0103	-	hypothetical protein	
71	 40.99 -2    56086..56712    	 +	208	18311714	-	PAE0105	-	hypothetical protein	
72	 32.52 -2    56712..57329    	 +	205	18311715	-	PAE0106	-	hypothetical protein	
73	 53.49       57434..57805    	 -	123	18311716	-	PAE0108	-	hypothetical protein	
74	 54.74       57805..60177    	 -	790	18311717	-	PAE0109	-	conserved hypothetical protein	
75	 55.73       60164..61096    	 -	310	18311718	-	PAE0111	-	hypothetical protein	
76	 56.72 +1    61084..61968    	 -	294	18311719	-	PAE0112	-	hypothetical protein	
77	 52.32       61965..62891    	 -	308	18311720	-	PAE0114	-	conserved hypothetical protein	
78	 51.90       62888..63334    	 -	148	18311721	-	PAE0115	-	hypothetical protein	
79	 55.99       63419..64411    	 +	330	18311722	-	PAE0116	-	hypothetical protein	
80	 57.93 +1    64616..66046    	 -	476	18311723	-	PAE0117	-	hypothetical protein	
81	 46.27 -1    66135..66389    	 +	84	18311724	-	PAE0118	-	hypothetical protein	
82	 61.29 +1    66414..68069    	 +	551	18311725	-	PAE0119	-	hypothetical protein	
83	 49.72       68073..68603    	 -	176	18311726	-	PAE0120	-	hypothetical protein	
84	 48.59       68735..69724    	 -	329	18311727	-	PAE0121	-	hypothetical protein	
85	 62.51 +2    69828..70814    	 +	328	18311728	-	PAE0122	-	hypothetical protein	
86	 59.55 +1    71097..71363    	 +	88	18311729	-	PAE0124	-	hypothetical protein	
87	 59.14 +1    71374..72024    	 +	216	18311730	-	PAE0126	-	conserved hypothetical protein	
88	 60.26 +1    72118..73725    	 +	535	18311731	-	PAE0128	-	conserved hypothetical protein	
89	 59.11 +1    73722..74171    	 +	149	18311732	-	PAE0129	-	conserved hypothetical protein	
90	 60.85 +1    74251..74508    	 +	85	18311733	-	PAE0131	-	hypothetical protein	
91	 51.93       74890..75330    	 -	146	18311734	-	PAE0133	-	hypothetical protein	
92	 54.43       75306..75926    	 -	206	18311735	-	PAE0134	-	hypothetical protein	
93	 56.80 +1    75923..76297    	 -	124	18311736	-	PAE0135	-	hypothetical protein	
94	 55.26       76373..76714    	 -	113	18311737	-	PAE0137	-	hypothetical protein	
95	 48.89       77136..77405    	 -	89	18311738	-	PAE0138	-	hypothetical protein	
96	 60.75 +1    77455..77640    	 +	61	18311739	-	PAE0139	-	hypothetical protein	
97	 52.54       77664..77840    	 -	58	18311740	-	PAE0141	-	hypothetical protein	
98	 48.90       77849..78304    	 +	151	18311741	-	PAE0142	-	paREP5a	
99	 52.92       78314..78655    	 +	113	18311742	-	PAE0143	-	paREP5b	
100	 56.34       78825..79163    	 -	112	18311743	-	PAE0144	-	conserved hypothetical protein	

 
 51.51 MEAN 
 
 5.02  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.