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IslandPath Analysis: Pasteurella multocida Pm70

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.65 STD DEV: 3.39

Pasteurella multocida, complete genome - 0..2257487
2015 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.95         185..829      	 -	214	15601866	sodA	PM0001	P	SodA	
2	 43.39         983..3259     	 -	758	15601867	mdh_1	PM0002	C	Mdh	
3	 41.34        3461..4159     	 +	232	15601868	rsuA_1	PM0003	J	RsuA	
4	 41.77        4170..5366     	 +	398	15601869	bcr_1	PM0004	G	Bcr	
5	 42.68        5567..6208     	 +	213	15601870	ccmA	PM0005	Q	CcmA	
6	 42.79        6236..6901     	 +	221	15601871	ccmB	PM0006	O	CcmB	
7	 43.86        6914..7654     	 +	246	15601872	ccmC	PM0007	O	CcmC	
8	 40.69        7672..7875     	 +	67	15601873	ccmD	PM0008	N	CcmD	
9	 40.93        7872..8411     	 +	179	15601874	ccmE	PM0009	O	CcmE	
10	 44.12 +1     8408..10363    	 +	651	15601875	ccmF	PM0010	O	CcmF	
11	 37.18 -1    10360..10905    	 +	181	15601876	dsbE_1	PM0011	O	DsbE	
12	 41.29       10905..11369    	 +	154	15601877	ccmH_1	PM0012	O	CcmH	
13	 39.34       11366..12280    	 +	304	15601878	ccmH_2	PM0013	R	CcmH	
14	 36.30 -1    12413..12817    	 +	134	15601879	-	PM0014	E	unknown	
15	 36.06 -1    12829..13452    	 +	207	15601880	-	PM0015	-	unknown	
16	 36.30 -1    13476..13778    	 +	100	15601881	-	PM0016	-	unknown	
17	 35.69 -1    13833..14597    	 -	254	15601882	-	PM0017	L	unknown	
18	 43.30       14619..15872    	 -	417	15601883	uraA	PM0018	F	UraA	
19	 42.42       15992..16618    	 -	208	15601884	upp	PM0019	F	Upp	
20	 42.83       16766..17407    	 -	213	15601885	purN	PM0020	F	PurN	
21	 42.10       17407..18444    	 -	345	15601886	purM	PM0021	F	PurM	
22	 40.04       18687..19163    	 +	158	15601887	-	PM0022	-	unknown	
23	 44.03       19571..21103    	 +	510	15601888	nrfA	PM0023	P	NrfA	
24	 42.10       21141..21836    	 +	231	15601889	nrfB	PM0024	P	NrfB	
25	 45.23 +1    21833..22513    	 +	226	15601890	nrfC	PM0025	C	NrfC	
26	 41.56       22510..23469    	 +	319	15601891	nrfD	PM0026	P	NrfD	
27	 42.58       23544..25469    	 +	641	15601892	nrfE	PM0027	O	NrfE	
28	 42.50       25486..26052    	 +	188	15601893	dsbE_2	PM0028	O	DsbE	
29	 44.24 +1    26036..26521    	 +	161	15601894	nrfF_1	PM0029	O	NrfF	
30	 41.94       26518..27354    	 +	278	15601895	nrfF_2	PM0030	R	NrfF	
31	 43.30       27427..28650    	 +	407	15601896	-	PM0031	R	unknown	
32	 43.71       29585..31039    	 +	484	15601897	hktE	PM0032	P	HktE	
33	 37.80       31088..31624    	 -	178	15601898	-	PM0033	K	unknown	
34	 43.02       31764..35243    	 +	1159	15601899	dnaE	PM0034	L	DnaE	
35	 39.86       35240..35806    	 +	188	15601900	-	PM0035	S	unknown	
36	 43.13       35843..37210    	 -	455	15601901	sdaA	PM0036	E	SdaA	
37	 39.13       37268..38509    	 -	413	15601902	sdaC	PM0037	E	SdaC	
38	 41.30       38776..39603    	 -	275	15601903	-	PM0038	R	unknown	
39	 42.17       39720..40703    	 -	327	15601904	ars	PM0039	R	Ars	
40	 42.58       40842..43025    	 -	727	15601905	pfhR	PM0040	P	PfhR	
41	 36.34 -1    43166..44860    	 -	564	15601906	-	PM0041	I	unknown	
42	 41.08       45038..45592    	 +	184	15601907	-	PM0042	P	unknown	
43	 44.81 +1    45666..47015    	 -	449	15601908	gdhA	PM0043	E	GdhA	
44	 37.48       47349..47975    	 -	208	15601909	-	PM0044	S	unknown	
45	 40.87       48229..49647    	 +	472	15601910	-	PM0045	M	unknown	
46	 42.83       49859..50395    	 -	178	15601911	dsbB	PM0046	O	DsbB	
47	 40.40       50417..51958    	 -	513	15601912	nhaB	PM0047	P	NhaB	
48	 39.94       52112..52837    	 +	241	15601913	fadR	PM0048	K	FadR	
49	 39.98       52929..53966    	 -	345	15601914	fbpC	PM0049	P	FbpC	
50	 40.87       53969..55627    	 -	552	15601915	fbpB	PM0050	H	FbpB	
51	 40.36       55706..56773    	 -	355	15601916	fbpA	PM0051	H	FbpA	
52	 42.39       56904..58118    	 -	404	15601917	-	PM0052	E	unknown	
53	 42.59       58288..59583    	 +	431	15601918	menF	PM0053	H	MenF	
54	 42.41       59596..61302    	 +	568	15601919	menD	PM0054	H	MenD	
55	 40.19       61344..62087    	 +	247	15601920	-	PM0055	R	unknown	
56	 39.39       62686..64137    	 +	483	15601921	lspB_1	PM0056	N	LspB	
57	 40.81       64167..72014    	 +	2615	15601922	pfhB1	PM0057	M	PfhB1	
58	 36.25 -1    73336..74742    	 +	468	15601923	lspB_2	PM0058	N	LspB	
59	 39.94       74772..86531    	 +	3919	15601924	pfhB2	PM0059	M	PfhB2	
60	 40.93       86700..87620    	 -	306	15601925	era	PM0060	R	Era	
61	 44.10 +1    87617..88294    	 -	225	15601926	rnc	PM0061	K	Rnc	
62	 40.96       88301..89323    	 -	340	15601927	lepB	PM0062	N	LepB	
63	 42.90       89342..91138    	 -	598	15601928	lepA	PM0063	N	LepA	
64	 38.02       91370..91753    	 -	127	15601929	-	PM0064	R	unknown	
65	 42.30       92029..92697    	 +	222	15601930	ung	PM0065	L	Ung	
66	 40.15       92725..93501    	 +	258	15601931	-	PM0066	S	unknown	
67	 38.14       93488..94069    	 +	193	15601932	-	PM0067	-	unknown	
68	 40.33       94070..94984    	 +	304	15601933	-	PM0068	P	unknown	
69	 42.65       95079..96044    	 +	321	15601934	pfkA	PM0069	G	PfkA	
70	 42.23       96137..97327    	 -	396	15601935	-	PM0070	J	unknown	
71	 44.03       97334..98389    	 -	351	15601936	-	PM0071	G	unknown	
72	 41.31       98398..98748    	 -	116	15601937	-	PM0072	-	unknown	
73	 41.60       98748..99098    	 -	116	15601938	-	PM0073	F	unknown	
74	 42.96       99486..100337   	 +	283	15601939	-	PM0074	P	unknown	
75	 41.83      100417..102747   	 +	776	15601940	pflB	PM0075	C	PflB	
76	 42.25      102920..104959   	 +	679	15601941	est	PM0076	I	Est	
77	 39.54      105123..105863   	 +	246	15601942	act	PM0077	O	Act	
78	 45.11 +1   106080..106580   	 -	166	15601943	-	PM0078	F	unknown	
79	 44.84 +1   106595..107446   	 -	283	15601944	thyA	PM0079	F	ThyA	
80	 42.68      107443..108255   	 -	270	15601945	lgt	PM0080	M	Lgt	
81	 42.26      108265..109059   	 -	264	15601946	-	PM0081	R	unknown	
82	 37.86      109062..109658   	 -	198	15601947	-	PM0082	L	unknown	
83	 39.15      110243..110809   	 -	188	15601948	ampD	PM0083	M	AmpD	
84	 38.85      110969..111403   	 +	144	15601949	-	PM0084	N	unknown	
85	 40.91      111403..112788   	 +	461	15601950	hofB	PM0085	N	HofB	
86	 38.23      112857..113999   	 +	380	15601951	hofC	PM0086	N	HofC	
87	 39.56      113999..114721   	 +	240	15601952	hopD	PM0087	N	HopD	
88	 40.42      114736..115356   	 +	206	15601953	-	PM0088	H	unknown	
89	 44.14 +1   115349..115570   	 +	73	15601954	-	PM0089	S	unknown	
90	 35.56 -1   115570..115839   	 +	89	15601955	-	PM0090	R	unknown	
91	 42.50      116288..117661   	 +	457	15601956	-	PM0091	E	unknown	
92	 38.05      117906..118223   	 +	105	15601957	-	PM0092	J	unknown	
93	 40.27      118281..119174   	 -	297	15601958	xerD	PM0093	L	XerD	
94	 41.80      119177..120334   	 -	385	15601959	-	PM0094	G	unknown	
95	 43.96      120334..121161   	 -	275	15601960	proC	PM0095	E	ProC	
96	 38.28      121255..122163   	 +	302	15601961	rdgC	PM0096	L	RdgC	
97	 42.74      122316..123059   	 +	247	15601962	-	PM0097	R	unknown	
98	 42.59      123125..124291   	 -	388	15601963	oapA	PM0098	M	OapA	
99	 40.04      124385..125398   	 -	337	15601964	-	PM0099	E	unknown	
100	 40.92      125434..126000   	 +	188	15601965	efp	PM0100	J	Efp	

 
 40.65 MEAN 
 
 3.39  STD DEV

Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.