IslandPath Analysis: Pseudomonas aeruginosa PAO1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.74   STD DEV: 3.98
Pseudomonas aeruginosa, complete genome - 0..6264403
5567 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.52 -1      483..2027     	 +	514	15595199	dnaA	PA0001	L	chromosomal replication initiator protein DnaA	
2	 61.96 -1     2056..3159     	 +	367	15595200	dnaN	PA0002	L	DNA polymerase III, beta chain	
3	 61.62 -1     3169..4278     	 +	369	15595201	recF	PA0003	L	RecF protein	
4	 62.41 -1     4275..6695     	 +	806	15595202	gyrB	PA0004	L	DNA gyrase subunit B	
5	 66.28        7018..7791     	 -	257	15595203	PA0005	PA0005	I	probable acyltransferase	
6	 63.31        7803..8339     	 -	178	15595204	PA0006	PA0006	E	conserved hypothetical protein	
7	 66.55        8671..10377    	 +	568	15595205	PA0007	PA0007	-	hypothetical protein	
8	 67.06       10434..12488    	 -	684	15595206	glyS	PA0008	J	glycyl-tRNA synthetase beta chain	
9	 64.66       12488..13435    	 -	315	15595207	glyQ	PA0009	J	glycyl-tRNA synthetase alpha chain	
10	 64.86       13540..14091    	 +	183	15595208	tag	PA0010	L	DNA-3-methyladenine glycosidase I	
11	 58.78 -2    14235..15122    	 +	295	15595209	PA0011	PA0011	N	probable 2-OH-lauroyltransferase	
12	 58.80 -1    15207..15473    	 +	88	15595210	PA0012	PA0012	-	hypothetical protein	
13	 62.23 -1    15620..16273    	 +	217	15595211	PA0013	PA0013	S	conserved hypothetical protein	
14	 62.27 -1    16335..16607    	 -	90	15595212	PA0014	PA0014	-	hypothetical protein	
15	 66.67       16900..17217    	 -	105	15595213	PA0015	PA0015	R	hypothetical protein	
16	 65.79       17366..18739    	 -	457	15595214	trkA	PA0016	P	potassium uptake protein TrkA	
17	 70.73 +1    18767..20071    	 -	434	15595215	PA0017	PA0017	J	conserved hypothetical protein	
18	 71.11 +1    20068..21012    	 -	314	15595216	fmt	PA0018	J	methionyl-tRNA formyltransferase	
19	 61.54 -1    21067..21573    	 -	168	15595217	def	PA0019	J	polypeptide deformylase	
20	 65.59       21712..22737    	 +	341	15595218	PA0020	PA0020	S	hypothetical protein	
21	 73.00 +1    22872..23960    	 +	362	15595219	PA0021	PA0021	L	conserved hypothetical protein	
22	 70.07       24001..24558    	 +	185	15595220	PA0022	PA0022	J	conserved hypothetical protein	
23	 67.48       24568..25545    	 -	325	15595221	qor	PA0023	C	quinone oxidoreductase	
24	 66.78       25736..26653    	 +	305	15595222	hemF	PA0024	H	coproporphyrinogen III oxidase, aerobic	
25	 69.70       26711..27535    	 +	274	15595223	aroE	PA0025	E	shikimate dehydrogenase	
26	 66.87       27646..28632    	 +	328	15595224	PA0026	PA0026	-	hypothetical protein	
27	 69.54       28613..29899    	 +	428	15595225	PA0027	PA0027	O	hypothetical protein	
28	 71.48 +1    29896..30498    	 +	200	15595226	PA0028	PA0028	-	hypothetical protein	
29	 70.40       30502..32055    	 -	517	15595227	PA0029	PA0029	P	probable sulfate transporter	
30	 69.16       32060..32983    	 -	307	15595228	PA0030	PA0030	E	hypothetical protein	
31	 68.19       33000..34511    	 -	503	15595229	betC	PA0031	P	choline sulfatase	
32	 68.63       34624..35538    	 +	304	15595230	PA0032	PA0032	K	probable transcriptional regulator	
33	 67.49       35905..36270    	 -	121	15595231	PA0033	PA0033	-	hypothetical protein	
34	 62.82       36278..36901    	 -	207	15595232	PA0034	PA0034	T	probable two-component response regulator	
35	 69.39       37087..37893    	 -	268	15595233	tr	PA0035	E	tryptophan synthase alpha chain	
36	 67.08       37890..39098    	 -	402	15595234	trpB	PA0036	E	tryptophan synthase beta chain	
37	 72.64 +1    39202..40089    	 +	295	15595235	trpI	PA0037	K	transcriptional regulator TrpI	
38	 57.87 -2    40190..40405    	 +	71	15595236	PA0038	PA0038	S	hypothetical protein	
39	 59.65 -1    40589..40816    	 +	75	15595237	PA0039	PA0039	-	hypothetical protein	
40	 69.98       41113..42801    	 +	562	15595238	PA0040	PA0040	N	conserved hypothetical protein	
41	 68.57       42914..53521    	 +	3535	15595239	PA0041	PA0041	M	probable hemagglutinin	
42	 62.63 -1    56546..56941    	 +	131	15595240	PA0042	PA0042	-	hypothetical protein	
43	 69.92       57212..58594    	 -	460	15595241	PA0043	PA0043	S	hypothetical protein	
44	 67.32       58786..60159    	 +	457	15595242	exoT	PA0044	-	exoenzyme T	
45	 64.34       60656..61342    	 +	228	15595243	PA0045	PA0045	M	hypothetical protein	
46	 64.97       61373..61726    	 +	117	15595244	PA0046	PA0046	-	hypothetical protein	
47	 69.02       61879..62388    	 +	169	15595245	PA0047	PA0047	-	hypothetical protein	
48	 68.75       62403..62786    	 -	127	15595246	PA0048	PA0048	K	probable transcriptional regulator	
49	 71.24 +1    63068..64729    	 -	553	15595247	PA0049	PA0049	-	hypothetical protein	
50	 68.79       65339..65479    	 +	46	15595248	PA0050	PA0050	-	hypothetical protein	
51	 66.94       66303..68135    	 +	610	15595249	PA0051	PA0051	E	probable glutamine amidotransferase	
52	 69.70       68188..68616    	 -	142	15595250	PA0052	PA0052	-	hypothetical protein	
53	 59.22 -1    69272..69526    	 +	84	15595251	PA0053	PA0053	N	hypothetical protein	
54	 70.67       69543..70091    	 -	182	15595252	PA0054	PA0054	J	conserved hypothetical protein	
55	 66.27       70130..70636    	 -	168	15595253	PA0055	PA0055	S	hypothetical protein	
56	 72.64 +1    70702..71622    	 -	306	15595254	PA0056	PA0056	K	probable transcriptional regulator	
57	 68.24       71730..72617    	 +	295	15595255	PA0057	PA0057	R	hypothetical protein	
58	 72.34 +1    72680..73384    	 +	234	15595256	PA0058	PA0058	O	hypothetical protein	
59	 65.79       73468..73923    	 +	151	15595257	osmC	PA0059	O	osmotically inducible protein OsmC	
60	 60.68 -1    74034..74267    	 +	77	15595258	PA0060	PA0060	-	conserved hypothetical protein	
61	 71.00 +1    74279..74716    	 -	145	15595259	PA0061	PA0061	-	hypothetical protein	
62	 68.35       74773..75189    	 -	138	15595260	PA0062	PA0062	-	hypothetical protein	
63	 69.95       75281..76408    	 +	375	15595261	PA0063	PA0063	-	hypothetical protein	
64	 69.72       76416..77399    	 -	327	15595262	PA0064	PA0064	-	hypothetical protein	
65	 67.42       77432..78097    	 -	221	15595263	PA0065	PA0065	R	hypothetical protein	
66	 66.85       78090..78632    	 -	180	15595264	PA0066	PA0066	R	conserved hypothetical protein	
67	 67.99       78710..80755    	 +	681	15595265	prlC	PA0067	E	oligopeptidase A	
68	 65.94       80752..81027    	 +	91	15595266	PA0068	PA0068	R	hypothetical protein	
69	 69.12       81116..82174    	 +	352	15595267	PA0069	PA0069	L	conserved hypothetical protein	
70	 67.98       82404..83318    	 -	304	15595268	PA0070	PA0070	-	hypothetical protein	
71	 66.67       83380..85092    	 -	570	15595269	PA0071	PA0071	S	hypothetical protein	
72	 73.58 +1    85085..86284    	 -	399	15595270	PA0072	PA0072	R	hypothetical protein	
73	 74.31 +1    86284..87003    	 -	239	15595271	PA0073	PA0073	R	probable ATP-binding component of ABC transporter	
74	 70.57       87000..90098    	 -	1032	15595272	ppkA	PA0074	T	serine/threonine protein kinase PpkA	
75	 69.68       90106..90834    	 -	242	15595273	PA0075	PA0075	T	probable phosphoprotein phosphatase	
76	 71.81 +1    90844..91524    	 -	226	15595274	PA0076	PA0076	S	hypothetical protein	
77	 69.78       91521..94826    	 -	1101	15595275	PA0077	PA0077	S	hypothetical protein	
78	 72.22 +1    95048..96397    	 -	449	15595276	PA0078	PA0078	N	hypothetical protein	
79	 70.26       96404..97738    	 -	444	15595277	PA0079	PA0079	S	hypothetical protein	
80	 70.97 +1    97754..98218    	 -	154	15595278	PA0080	PA0080	S	hypothetical protein	
81	 71.02 +1    98263..99756    	 -	497	15595279	PA0081	PA0081	T	hypothetical protein	
82	 70.14      100124..101158   	 +	344	15595280	PA0082	PA0082	S	hypothetical protein	
83	 64.55      101247..101765   	 +	172	15595281	PA0083	PA0083	S	conserved hypothetical protein	
84	 64.60      101778..103274   	 +	498	15595282	PA0084	PA0084	S	conserved hypothetical protein	
85	 62.58 -1   103350..103838   	 +	162	15595283	PA0085	PA0085	R	conserved hypothetical protein	
86	 70.09      104006..104851   	 +	281	15595284	PA0086	PA0086	-	hypothetical protein	
87	 69.80      104853..105362   	 +	169	15595285	PA0087	PA0087	S	hypothetical protein	
88	 69.62      105359..107218   	 +	619	15595286	PA0088	PA0088	S	hypothetical protein	
89	 70.30      107182..108228   	 +	348	15595287	PA0089	PA0089	S	hypothetical protein	
90	 68.40      108221..110929   	 +	902	15595288	PA0090	PA0090	O	probable ClpA/B-type chaperone	
91	 67.13      110976..112907   	 +	643	15595289	PA0091	PA0091	S	conserved hypothetical protein	
92	 62.11 -1   113022..113306   	 -	94	15595290	PA0092	PA0092	-	hypothetical protein	
93	 67.36      113303..114595   	 -	430	15595291	PA0093	PA0093	-	hypothetical protein	
94	 66.90      114611..115045   	 -	144	15595292	PA0094	PA0094	-	hypothetical protein	
95	 65.81      115299..117524   	 +	741	15595293	PA0095	PA0095	S	conserved hypothetical protein	
96	 69.56      117552..118001   	 +	149	15595294	PA0096	PA0096	-	hypothetical protein	
97	 70.08      117931..119130   	 +	399	15595295	PA0097	PA0097	-	hypothetical protein	
98	 71.39 +1   119127..120164   	 +	345	15595296	PA0098	PA0098	I	hypothetical protein	
99	 60.98 -1   120164..121324   	 +	386	15595297	PA0099	PA0099	-	hypothetical protein	
100	 62.54 -1   121346..122266   	 +	306	15595298	PA0100	PA0100	-	hypothetical protein	

 
 66.74 MEAN 
 
 3.98  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.