IslandPath Analysis: Pyrococcus abyssi GE5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.00   STD DEV: 3.47
Pyrococcus abyssi, complete genome - 0..1765118
1769 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 50.30 +1	-598..61       	 -	219	14521983	-	PAB1166	J	LSU ribosomal protein L1P (rpl1P)	
2	 48.08		125..619      	 -	164	14520219	rpl11P	PAB2353	J	LSU ribosomal protein L11P	
3	 46.62        	631..1089     	 -	152	14520220	-	PAB2352	K	PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG.	
4	 44.09        1094..1279     	 -	61	14520221	-	PAB3002	N	PROTEIN TRANSLOCASE, SUBUNIT SEC61 GAMMA (SECE)	
5	 47.10        1332..2450     	 -	372	14520222	ftsZ-1	PAB2351	D	cell division protein	
6	 45.89        2519..2932     	 -	137	14520223	-	PAB2350	-	hypothetical protein	
7	 43.71        3291..4109     	 -	272	14520224	-	PAB2349	S	hypothetical protein	
8	 44.16        4189..4890     	 +	233	14520225	-	PAB0004	R	hypothetical protein	
9	 39.42 -1     5795..6139     	 +	114	14520226	-	PAB0005	-	hypothetical protein	
10	 45.95        6417..7034     	 +	205	14520227	-	PAB0006	S	hypothetical protein	
11	 45.60        7012..7851     	 -	279	14520228	nadC	PAB2347	H	nicotinate-nucleotide pyrophosphorylase	
12	 45.19        7855..8655     	 -	266	14520229	-	PAB2346	K	hypothetical protein	
13	 47.36        8657..9583     	 -	308	14520230	-	PAB2345	H	QUINOLINATE SYNTHETASE A	
14	 42.49        9596..10786    	 -	396	14520231	-	PAB2344	S	hypothetical protein	
15	 47.38       10818..12212    	 -	464	14520232	-	PAB2343	H	L-ASPARTATE OXIDASE (EC 1.4.3.16) (QUINOLINATE SYNTHETASE B)	
16	 44.61       12209..13618    	 -	469	14520233	-	PAB2342	S	hypothetical protein	
17	 40.43 -1    13874..14620    	 +	248	14520234	-	PAB0011	-	hypothetical protein	
18	 52.63 +2    14665..16317    	 -	550	14520235	thsA	PAB2341	O	thermosome, subunit alpha	
19	 44.10       16469..17248    	 +	259	14520236	-	PAB0014	-	hypothetical protein	
20	 39.53 -1    17267..17653    	 -	128	14520237	-	PAB2340	R	hypothetical protein	
21	 39.72 -1    17640..18062    	 -	140	14520238	-	PAB2339	S	hypothetical protein	
22	 43.43       18111..18833    	 -	240	14520239	-	PAB2338	O	PYRUVATE FORMATE-LYASE ACTIVATING ENZYME RELATED PROTEIN	
23	 45.57       18840..20816    	 -	658	14520240	-	PAB2337	F	ANAEROBIC RIBONUCLEOSIDE-TRIPHOSPHATE REDUCTASE	
24	 45.84       20895..21989    	 -	364	14520241	-	PAB2336	N	hypothetical MALTOSE/MALTODEXTRIN TRANSPORT ATP-BINDING	
25	 44.12       21995..22828    	 -	277	14520242	-	PAB2335	G	SUGAR ABC TRANSPORTER, PERMEASE PROTEIN	
26	 43.74       22825..23679    	 -	284	14520243	-	PAB2334	G	probable SUGAR ABC TRANSPORTER, PERMEASE PROTEIN	
27	 45.90       23719..24999    	 -	426	14520244	-	PAB2333	R	putative TREHALOSE/MALTOSE BINDING PROTEIN or SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC	
28	 43.24       25162..26181    	 +	339	14520245	-	PAB0017	R	hypothetical protein	
29	 46.38       26178..26453    	 -	91	14520246	-	PAB3009	J	translation elongation factor EF-1, subunit beta	
30	 54.69 +2    26454..26645    	 -	63	14521984	-	PAB0018a	J	Predicted Zn-ribbon RNA-binding protein involved in translation	
31	 45.70       26563..27573    	 +	336	14520247	ubiA-like	PAB0018	H	4-hydroxybenzoate octaprenyltransferase, putative	
32	 42.78       27574..27954    	 +	126	14520248	-	PAB0019	-	hypothetical protein	
33	 44.76       28198..29676    	 +	492	14520249	putP-3	PAB2354	E	PROLINE SYMPORTER (PROLINE PERMEASE).	
34	 49.65 +1    29724..31598    	 -	624	14520250	aor-3	PAB2330	C	aldehyde ferredoxin oxidoreductase	
35	 47.38       31589..32428    	 -	279	14520251	-	PAB2329	R	MORPHINE 6-DEHYDROGENASE HOMOLOG	
36	 45.10       33017..33322    	 -	101	14520252	-	PAB2328	K	hypothetical protein	
37	 43.77       33424..34017    	 -	197	14520253	-	PAB2327	-	hypothetical protein	
38	 41.46 -1    34176..34790    	 +	204	14520254	-	PAB0023	R	hypothetical protein	
39	 48.37       34782..35792    	 -	336	14520255	-	PAB2326	H	hypothetical protein	
40	 44.44       36130..36570    	 -	146	14520256	-	PAB2325	R	hypothetical protein	
41	 47.20       36567..36905    	 -	112	14520257	-	PAB2324	K	hypothetical protein	
42	 45.00       37021..37560    	 -	179	14520258	-	PAB2323	H	hypothetical protein	
43	 35.84 -2    37587..38024    	 -	145	14520259	-	PAB2322	-	hypothetical protein	
44	 36.93 -2    38347..39096    	 -	249	14520260	-	PAB2321	-	hypothetical protein	
45	 46.07       39205..39903    	 -	232	14520261	cobS-1	PAB2320	H	cobalamin (5'-phosphate) synthase	
46	 46.51       39900..40157    	 -	85	14520262	-	PAB3017	-	hypothetical protein	
47	 47.45       40150..40581    	 -	143	14520263	-	PAB2319	I	hypothetical protein	
48	 47.08       40644..41516    	 +	290	14520264	cbib	PAB0025	H	cobalamin biosynthesis protein B	
49	 45.76       41501..42490    	 +	329	14520265	hisC	PAB0026	E	histidinol-phosphate aminotransferase	
50	 49.31 +1    42458..43690    	 -	410	14520266	-	PAB2318	G	phosphonopyruvate decarboxylase, putative	
51	 44.62       43723..44652    	 -	309	14520267	-	PAB2317	L	PROBABLE MODIFICATION METHYLASE	
52	 49.31 +1    44628..44915    	 -	95	14520268	rpoL	PAB2316	K	DNA-directed RNA polymerase, subunit L	
53	 48.33       44875..45534    	 -	219	14520269	-	PAB2315	S	hypothetical protein	
54	 46.17       45531..46130    	 -	199	14520270	-	PAB2314	J	hypothetical protein	
55	 47.16       46097..48664    	 -	855	14520271	-	PAB2313	R	ATP-dependent RNA helicase, putative	
56	 42.52       48673..49140    	 -	155	14520272	-	PAB2312	K	TRANSCRIPTIONAL REGULATORY PROTEIN or LEUCINE-RESPONSIVE-REGULATORY PROTEIN	
57	 45.32       49144..49485    	 -	113	14520273	-	PAB2311	-	hypothetical protein	
58	 45.91       49577..50053    	 -	158	14520274	-	PAB2310	S	hypothetical protein	
59	 46.80       50007..51692    	 +	561	14520275	-	PAB0027	R	hypothetical protein	
60	 46.19       51679..52767    	 -	362	14520276	-	PAB2307	S	DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE	
61	 48.39       52802..53485    	 -	227	14520277	-	PAB2306	J	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN	
62	 47.90       53491..54705    	 -	404	14520278	-	PAB2305	J	hypothetical protein	
63	 45.01       54784..55836    	 -	350	14520279	-	PAB2304	R	hypothetical protein	
64	 46.73       55898..56890    	 -	330	14520280	-	PAB2303	E	PUTATIVE 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE (ACC DEAMINASE)	
65	 44.73       57439..58131    	 -	230	14520281	-	PAB2302	H	MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN (MOEB)	
66	 45.70       58109..58666    	 -	185	14520282	-	PAB2301	F	HIT FAMILY PROTEIN (HIT)	
67	 46.33       59426..59902    	 +	158	14520283	rps15P	PAB0033	J	SSU ribosomal protein S15P	
68	 47.58       59921..61366    	 +	481	14520284	recJ-like	PAB0034	L	PUTATIVE SS-DNA-SPECIFIC EXONUCLEASE RECJ RELATED	
69	 46.93       61592..62194    	 +	200	14520285	rps3AE	PAB0035	J	SSU ribosomal protein S3AE	
70	 38.48 -1    62191..62637    	 -	148	14520286	-	PAB2299	K	hypothetical TRANSCRIPTIONAL REGULATOR	
71	 41.35 -1    62719..62955    	 -	78	14520287	-	PAB3022	R	hypothetical protein	
72	 43.95       62969..63373    	 -	134	14520288	-	PAB2298	K	hypothetical protein	
73	 41.21 -1    63491..64252    	 +	253	14520289	-	PAB0036	-	hypothetical protein	
74	 47.07       64275..65024    	 +	249	14520290	-	PAB0037	S	hypothetical protein	
75	 40.37 -1    65639..66661    	 -	340	14520291	-	PAB2294	E	asparaginase related protein	
76	 41.38 -1    66717..67412    	 -	231	14520292	-	PAB2293	-	hypothetical protein	
77	 39.87 -1    67480..67938    	 +	152	14520293	-	PAB0038	-	hypothetical protein	
78	 43.46       68005..69318    	 -	437	14520294	-	PAB2292	G	GLYCOGEN SYNTHASE	
79	 43.24       69342..70229    	 +	295	14520295	-	PAB0040	G	hypothetical protein	
80	 44.33       70230..70811    	 -	193	14520296	-	PAB2291	S	hypothetical protein	
81	 40.67 -1    70852..71451    	 +	199	14520297	-	PAB0041	H	hypothetical protein	
82	 43.40       71513..72088    	 +	191	14520298	-	PAB0042	S	hypothetical protein	
83	 43.97       72006..72494    	 +	162	14520299	-	PAB0043	S	hypothetical protein	
84	 43.94       72491..73018    	 -	175	14520300	-	PAB2289	H	hypothetical protein	
85	 41.76       73127..73969    	 +	280	14520301	-	PAB0044	-	hypothetical protein	
86	 45.95       73993..75078    	 +	361	14520302	-	PAB0045	E	D-AMINOPEPTIDASE.	
87	 43.82       75075..76142    	 +	355	14520303	-	PAB0046	R	hypothetical protein	
88	 43.81       76241..76975    	 -	244	14520304	-	PAB2288	H	MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN B RELATED	
89	 35.81 -2    77236..78891    	 -	551	14520305	-	PAB2287	-	hypothetical protein	
90	 48.58 +1    79050..79895    	 +	281	14520306	-	PAB0049	G	hypothetical protein	
91	 45.89       79959..80810    	 +	283	14520307	speB	PAB0050	E	agmatinase	
92	 41.72       80816..81292    	 +	158	14520308	-	PAB0051	R	hypothetical protein	
93	 43.61       81282..82001    	 -	239	14520309	-	PAB2286	R	hypothetical protein	
94	 44.59       81448..81891    	 +	147	14520310	-	PAB0052	-	hypothetical protein	
95	 38.05 -2    82066..82743    	 +	225	14520311	-	PAB0053	-	hypothetical protein	
96	 41.59       82740..83756    	 +	338	14520312	-	PAB0054	S	hypothetical protein	
97	 42.38       83680..84663    	 +	327	14520313	-	PAB0055	S	hypothetical protein	
98	 40.48 -1    84653..86023    	 +	456	14520314	-	PAB0056	M	hypothetical protein	
99	 50.12 +1    86140..88599    	 +	819	14520315	ppsA	PAB0057	G	phosphoenolpyruvate synthase	
100	 42.17       88644..89390    	 +	248	14520316	-	PAB0058	R	hypothetical protein	

 
 45.00 MEAN 
 
 3.47  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.