IslandPath Analysis: Mycobacterium tuberculosis CDC1551



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.21   STD DEV: 3.49
Mycobacterium tuberculosis CDC1551, complete genome - 0..4403836
4187 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 58.92 -1        1..1524     	 +	507	15839373	-	MT0001	-	chromosomal replication initiator protein DnaA	
2	 59.97 -1     2052..3260     	 +	402	15839374	-	MT0002	-	DNA polymerase III, beta subunit	
3	 60.02 -1     3280..4437     	 +	385	15839375	-	MT0003	-	recF protein	
4	 66.13        4434..4997     	 +	187	15839376	-	MT0004	-	conserved hypothetical protein	
5	 60.12 -1     5207..7267     	 +	686	15839377	-	MT0005	-	DNA gyrase subunit B	
6	 63.85        7302..9818     	 +	838	15839378	-	MT0006	-	DNA gyrase subunit A	
7	 68.20        9914..10828    	 +	304	15839379	-	MT0007	-	conserved hypothetical protein	
8	 62.32       11555..11692    	 -	45	15839380	-	MT0009	-	hypothetical protein	
9	 71.00 +1    11874..12311    	 -	145	15839381	-	MT0010	-	hypothetical protein	
10	 62.48       12468..13016    	 +	182	15839382	-	MT0011	-	peptidyl-prolyl cis-trans isomerase	
11	 67.32       13024..13176    	 -	50	15839383	-	MT0012	-	hypothetical protein	
12	 62.44       13133..13558    	 -	141	15839384	-	MT0013	-	hypothetical protein	
13	 56.38 -2    13714..13995    	 -	93	15839385	-	MT0014	-	hypothetical protein	
14	 64.89       14089..14877    	 +	262	15839386	-	MT0015	-	conserved hypothetical protein	
15	 63.95       14914..15612    	 +	232	15839387	-	MT0016	-	glutamine amidotransferase, class I	
16	 63.26       15590..17470    	 -	626	15839388	-	MT0017	-	serine/threonine protein kinase	
17	 67.67       17467..18762    	 -	431	15839389	-	MT0018	-	serine/threonine protein kinase	
18	 64.50       18759..20234    	 -	491	15839390	-	MT0019	-	penicillin-binding protein, putative	
19	 62.13       20231..21640    	 -	469	15839391	-	MT0020	-	cell division protein FtsW	
20	 67.38       21637..23172    	 -	511	15839392	-	MT0021	-	conserved hypothetical protein	
21	 63.03       23270..23737    	 -	155	15839393	-	MT0022	-	conserved hypothetical protein	
22	 66.35       23861..25426    	 -	521	15839394	-	MT0023	-	conserved hypothetical protein	
23	 66.05       25895..26863    	 -	322	15839395	-	MT0024	-	2-nitropropane dioxygenase	
24	 67.96       26975..27283    	 +	102	15839396	-	MT0025	-	hypothetical protein	
25	 67.32       27577..28347    	 +	256	15839397	-	MT0026	-	DNA-binding protein, putative	
26	 69.03 +1    28344..29189    	 +	281	15839398	-	MT0027	-	NLP/P60 family protein	
27	 64.84       29227..29499    	 +	90	15839399	-	MT0028	-	hypothetical protein	
28	 65.03       29703..31049    	 +	448	15839400	-	MT0029	-	hypothetical protein	
29	 62.89       31170..31487    	 +	105	15839401	-	MT0030	-	hypothetical protein	
30	 64.04       31573..31800    	 +	75	15839402	-	MT0030.1	-	hypothetical protein	
31	 62.50       31805..31948    	 -	47	15839403	-	MT0031	-	hypothetical protein	
32	 64.59       32031..32609    	 -	192	15839404	-	MT0032	-	hypothetical protein	
33	 67.11       32646..33098    	 +	150	15839405	-	MT0033	-	hypothetical protein	
34	 65.45       33168..33497    	 +	109	15839406	-	MT0034	-	hypothetical protein	
35	 66.67       33526..33738    	 +	70	15839407	-	MT0035	-	hypothetical protein	
36	 60.85 -1    33844..34101    	 -	85	15839408	-	MT0036	-	hypothetical protein	
37	 62.05       34239..36554    	 +	771	15839409	-	MT0037	-	aminotransferase, class II	
38	 56.82 -2    36551..36814    	 +	87	15839410	-	MT0038	-	acyl carrier protein	
39	 65.66       36811..37206    	 +	131	15839411	-	MT0039	-	hypothetical protein	
40	 63.59       37203..38891    	 +	562	15839412	-	MT0040	-	AMP-binding family protein	
41	 68.73 +1    39000..39773    	 -	257	15839413	-	MT0041	-	hypothetical protein	
42	 67.82       39821..41122    	 -	433	15839414	-	MT0042	-	membrane protein, putative	
43	 65.35       41248..41856    	 +	202	15839415	-	MT0043	-	conserved hypothetical protein	
44	 71.84 +1    41948..42295    	 -	115	15839416	-	MT0044	-	conserved hypothetical protein	
45	 67.52       42377..43309    	 -	310	15839417	-	MT0046	-	proline rich 28 kDa antigen	
46	 62.96       43506..46415    	 +	969	15839418	-	MT0047	-	leucyl-tRNA synthetase	
47	 63.80       46525..47151    	 -	208	15839419	-	MT0048	-	transcriptional regulator, MarR family	
48	 63.67       47310..48044    	 -	244	15839420	-	MT0049	-	transcriptional regulator, GntR family	
49	 66.54       48177..48971    	 -	264	15839421	-	MT0050	-	conserved hypothetical protein	
50	 67.11       48987..49883    	 -	298	15839422	-	MT0051	-	hypothetical protein	
51	 64.04       49965..51068    	 -	367	15839423	-	MT0052	-	1L-myo-inositol-1-phosphate synthase	
52	 66.48       51129..51671    	 -	180	15839424	-	MT0053	-	conserved hypothetical protein	
53	 65.98       51772..52641    	 -	289	15839425	-	MT0054	-	hypothetical protein	
54	 66.67       52775..53188    	 +	137	15839426	-	MT0055	-	conserved hypothetical protein	
55	 65.16       53181..55643    	 +	820	15839427	-	MT0056	-	penicillin-binding protein	
56	 64.59       55685..57322    	 +	545	15839428	-	MT0057	-	conserved hypothetical protein	
57	 65.88       57279..57917    	 +	212	15839429	-	MT0058	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme, putative	
58	 60.14 -1    58136..58426    	 +	96	15839430	-	MT0059	-	ribosomal protein S6	
59	 66.67       58530..59024    	 +	164	15839431	-	MT0060	-	single-strand binding protein	
60	 64.71       59066..59320    	 +	84	15839432	-	MT0061	-	ribosomal protein S18	
61	 62.09       59353..59811    	 +	152	15839433	-	MT0062	-	ribosomal protein L9	
62	 60.73 -1    59840..60361    	 +	173	15839434	-	MT0063	-	hypothetical protein	
63	 62.82       60340..62964    	 +	874	15839435	-	MT0064	-	replicative DNA helicase/intein	
64	 61.90       63144..63836    	 +	230	15839436	-	MT0065	-	hypothetical protein	
65	 60.06 -1    63853..64911    	 +	352	15839437	-	MT0066	-	hypothetical protein	
66	 60.89 -1    64956..65336    	 -	126	15839438	-	MT0066.1	-	hypothetical protein	
67	 64.32       65344..65556    	 -	70	15839439	-	MT0066.2	-	hypothetical protein	
68	 68.24       65496..66638    	 +	380	15839440	-	MT0067	-	cellulase	
69	 67.22       66867..68306    	 +	479	15839441	-	MT0068	-	mitR protein	
70	 66.67       68362..68523    	 +	53	15839442	-	MT0069	-	hypothetical protein	
71	 63.57       68564..71503    	 +	979	15839443	-	MT0070	-	conserved hypothetical protein	
72	 62.44       71802..72203    	 +	133	15839444	-	MT0071	-	hypothetical protein	
73	 61.80       72255..74492    	 -	745	15839445	-	MT0072	-	isocitrate dehydrogenase, NADP-dependent, monomeric type	
74	 65.09       74610..75179    	 -	189	15839446	-	MT0073	-	transcriptional regulator, TetR family	
75	 65.79       75282..76193    	 +	303	15839447	-	MT0074	-	oxidoreductase, short-chain dehydrogenase/reductase family	
76	 65.08       76218..77603    	 -	461	15839448	-	MT0075	-	L-serine dehydratase	
77	 66.12       77600..78877    	 -	425	15839449	-	MT0076	-	serine hydroxymethyltransferase	
78	 64.85       79467..80183    	 +	238	15839450	-	MT0077	-	conserved hypothetical protein	
79	 61.71 -1    80614..81663    	 +	349	15839451	-	MT0078	-	conserved hypothetical protein	
80	 62.64       81666..82658    	 +	330	15839452	-	MT0079	-	ABC transporter, ATP-binding protein	
81	 66.10       82738..83973    	 +	411	15839453	-	MT0080	-	conserved hypothetical protein	
82	 64.11       83986..85158    	 +	390	15839454	-	MT0081	-	aminotransferase, class I	
83	 62.31       85173..85562    	 -	129	15839455	-	MT0082	-	hypothetical protein	
84	 65.96       85626..86480    	 -	284	15839456	-	MT0083	-	hydrolase, alpha/beta hydrolase fold family	
85	 67.99       86518..87123    	 +	201	15839457	-	MT0084	-	transcriptional regulator, TetR family	
86	 61.11 -1    87198..87791    	 -	197	15839458	-	MT0085	-	hypothetical protein	
87	 61.50 -1    87788..88000    	 -	70	15839459	-	MT0085.1	-	hypothetical protein	
88	 68.13       88194..89015    	 +	273	15839460	-	MT0086	-	hypothetical protein	
89	 67.63       89057..89470    	 +	137	15839461	-	MT0087	-	conserved hypothetical protein	
90	 65.51       89565..89909    	 +	114	15839462	-	MT0088	-	transcriptional regulator, ArsR family	
91	 69.79 +1    89914..90393    	 +	159	15839463	-	MT0089	-	NADH-ubiquinone oxidoreductase, 20 Kd subunit	
92	 71.24 +1    90390..92312    	 +	640	15839464	-	MT0090	-	NADH-ubiquinone oxidoreductase, putative	
93	 68.56       92318..93268    	 +	316	15839465	-	MT0091	-	formate hydrogenlyase, subunit 4	
94	 68.93 +1    93279..93941    	 +	220	15839466	-	MT0092	-	hydrogenase-4 component E	
95	 68.92 +1    93941..95407    	 +	488	15839467	-	MT0093	-	NADH-ubiquinone oxidoreductase, putative	
96	 61.63 -1    96917..97591    	 +	224	15839468	-	MT0096	-	hypothetical protein	
97	 67.00       97748..98341    	 +	197	15839469	-	MT0098	-	methyltransferase, putative	
98	 65.63       98470..99240    	 +	256	15839470	-	MT0099	-	hypothetical protein	
99	 68.55       99259..99630    	 +	123	15839471	-	MT0099.1	-	hypothetical protein	
100	 65.10       99674..100441   	 +	255	15839472	-	MT0100	-	5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative	

 
 65.21 MEAN 
 
 3.49  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.