IslandPath Analysis: Mycoplasma pulmonis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.05   STD DEV: 4.11
Mycoplasma pulmonis complete genome - 0..963879
782 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 27.06         222..1607     	 +	461	15828472	-	MYPU_0010	L	CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA	
2	 22.64 -1     1741..2862     	 +	373	15828473	-	MYPU_0020	L	DNA POLYMERASE III, BETA CHAIN	
3	 26.13        2864..3085     	 +	73	15828474	-	MYPU_0030	S	conserved hypothetical protein	
4	 20.32 -1     3088..3771     	 +	227	15828475	-	MYPU_0040	-	conserved hypothetical protein	
5	 20.31 -1     3778..4422     	 -	214	15828476	-	MYPU_0050	-	unknown; predicted coding region	
6	 27.63        4603..6759     	 +	718	15828477	-	MYPU_0060	-	unknown; predicted coding region	
7	 24.32        6759..8189     	 +	476	15828478	-	MYPU_0070	-	P60-LIKE (Mycoplasma hominis) LIPOPROTEIN	
8	 25.64        8190..8540     	 +	116	15828479	-	MYPU_0080	F	HIT-LIKE PROTEIN (CELL CYCLE REGULATION)	
9	 32.57 +1     8643..9296     	 +	217	15828480	-	MYPU_0090	J	50S RIBOSOMAL PROTEIN L11	
10	 30.29        9296..9985     	 +	229	15828481	-	MYPU_0100	J	50S RIBOSOMAL PROTEIN L1	
11	 26.51       10940..12316    	 -	458	15828482	-	MYPU_0110	-	conserved hypothetical protein	
12	 24.16       12519..13205    	 -	228	15828483	-	MYPU_0120	-	unknown; predicted coding region	
13	 28.14       13293..14621    	 +	442	15828484	-	MYPU_0130	R	THIOPHENE AND FURAN OXIDATION PROTEIN THDF	
14	 30.04       14667..15425    	 +	252	15828485	-	MYPU_0140	L	conserved hypothetical protein	
15	 24.77       15426..16184    	 +	252	15828486	-	MYPU_0150	J	DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N', N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE)	
16	 23.33       16188..16547    	 +	119	15828487	-	MYPU_0160	-	unknown; predicted coding region	
17	 32.32 +1    16711..19086    	 +	791	15828488	-	MYPU_0170	G	PTS SYSTEM, GLUCOSE-SPECIFIC IIABC COMPONENT (EIIABC-GLC) (GLUCOSE-PERMEASE IIABC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, ABC COMPONENT)(EII-GLC/EIII-GLC)	
18	 22.99       19400..20608    	 +	402	15828489	-	MYPU_0180	L	TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138 (Mycoplasma pulmonis)	
19	 26.64       21109..23409    	 +	766	15828490	-	MYPU_0190	-	LIPOPROTEIN	
20	 24.17       24591..24950    	 +	119	15828491	-	MYPU_0200	-	unknown; predicted coding region	
21	 29.02       25127..26494    	 +	455	15828492	-	MYPU_0210	C	DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)	
22	 30.67       26515..27489    	 +	324	15828493	-	MYPU_0220	R	MGPA-LIKE (Mycoplasma genitalium) PROTEIN	
23	 31.66 +1    27742..29178    	 +	478	15828494	-	MYPU_0230	R	NADH OXIDASE (NOXASE)	
24	 30.21       29335..31866    	 +	843	15828495	-	MYPU_0240	-	LIPOPROTEIN	
25	 29.83       31869..32639    	 +	256	15828496	-	MYPU_0250	-	LIPOPROTEIN	
26	 28.23       32643..34445    	 +	600	15828497	-	MYPU_0260	-	ABC TRANSPORTER ATP-BINDING PROTEIN	
27	 30.23       34385..35449    	 +	354	15828498	-	MYPU_0270	G	ABC TRANSPORTER PERMEASE PROTEIN	
28	 29.75       35388..36392    	 +	334	15828499	-	MYPU_0280	G	ABC TRANSPORTER PERMEASE PROTEIN	
29	 26.88       36397..36582    	 +	61	15828500	-	MYPU_0290	-	unknown; predicted coding region	
30	 23.31       36626..37114    	 +	162	15828501	-	MYPU_0300	-	unknown; predicted coding region	
31	 24.07       37419..37742    	 +	107	15828502	-	MYPU_0310	-	unknown; predicted coding region	
32	 26.69       37708..38745    	 +	345	15828503	-	MYPU_0320	H	LIPOATE-PROTEIN LIGASE A	
33	 28.75       38663..39535    	 +	290	15828504	-	MYPU_0330	R	ESTERASE/LIPASE 2	
34	 29.15       39561..40826    	 +	421	15828505	-	MYPU_0340	J	SERYL-TRNA SYNTHETASE (SERINE--TRNA LIGASE)	
35	 30.98       40826..41632    	 +	268	15828506	-	MYPU_0350	R	ESTERASE/LIPASE 1	
36	 28.22       41636..42457    	 +	273	15828507	-	MYPU_0360	R	ESTERASE/LIPASE 1	
37	 27.01       42461..43282    	 +	273	15828508	-	MYPU_0370	R	ESTERASE/LIPASE 1	
38	 29.60       43306..44109    	 +	267	15828509	-	MYPU_0380	R	ESTERASE/LIPASE 1	
39	 21.59 -1    44365..45990    	 +	541	15828510	-	MYPU_0390	Q	ABC TRANSPORTER ATP-BINDING PROTEIN	
40	 22.92 -1    45965..46684    	 +	239	15828511	-	MYPU_0400	Q	ABC TRANSPORTER PERMEASE PROTEIN (MDR HOMOLOG)	
41	 21.67 -1    46741..47580    	 +	279	15828512	-	MYPU_0410	Q	ABC TRANSPORTER ATP-BINDING	
42	 20.62 -1    47605..48831    	 -	408	15828513	-	MYPU_0420	-	conserved hypothetical protein	
43	 26.60       48813..49703    	 -	296	15828514	-	MYPU_0430	L	CPG DNA METHYLASE (CYTOSINE-SPECIFIC METHYLTRANSFERASE)	
44	 26.51       49651..50031    	 -	126	15828515	-	MYPU_0440	-	CPG DNA METHYLASE (CYTOSINE-SPECIFIC METHYLTRANSFERASE)	
45	 26.55       50136..51005    	 +	289	15828516	-	MYPU_0450	J	METHIONYL-TRNA FORMYLTRANSFERASE	
46	 33.24 +1    51034..52083    	 +	349	15828517	-	MYPU_0460	G	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	
47	 25.47       52127..52393    	 -	88	15828518	-	MYPU_0470	-	unknown; predicted coding region	
48	 25.24       52206..53144    	 +	312	15828519	-	MYPU_0480	-	unknown; predicted coding region	
49	 25.97       53235..55745    	 +	836	15828520	-	MYPU_0490	L	DNA POLYMERASE III SUBUNIT GAMMA AND TAU	
50	 27.72       55738..56040    	 +	100	15828521	-	MYPU_0500	S	conserved hypothetical protein	
51	 25.00       56053..56628    	 +	191	15828522	-	MYPU_0510	L	RECOMBINATION PROTEIN RECR	
52	 29.08       56612..57316    	 +	234	15828523	-	MYPU_0520	F	THYMIDYLATE KINASE (DTMP KINASE)	
53	 23.60       57333..58226    	 +	297	15828524	-	MYPU_0530	L	DNA POLYMERASE III SUBUNITS GAMMA AND TAU	
54	 28.70       58219..58887    	 +	222	15828525	-	MYPU_0540	R	conserved hypothetical protein	
55	 28.33       59090..60787    	 -	565	15828526	-	MYPU_0550	F	5'-NUCLEOTIDASE PRECURSOR	
56	 25.06       60793..61215    	 -	140	15828527	-	MYPU_0560	-	LIPOPROTEIN	
57	 26.16       61414..62598    	 +	394	15828528	-	MYPU_0570	-	LIPOPROTEIN	
58	 18.69 -2    63374..64582    	 +	402	15828529	-	MYPU_0580	-	unknown; predicted coding region	
59	 23.56       64840..65739    	 +	299	15828530	-	MYPU_0590	-	unknown; predicted coding region	
60	 17.48 -2    65724..66644    	 +	306	15828531	-	MYPU_0600	-	unknown; predicted coding region	
61	 25.35       67316..67741    	 +	141	15828532	-	MYPU_0610	-	unknown; predicted coding region	
62	 19.50 -1    67762..68730    	 +	322	15828533	-	MYPU_0620	-	unknown; predicted coding region	
63	 20.29 -1    68967..69518    	 +	183	15828534	-	MYPU_0630	-	unknown; predicted coding region	
64	 24.30       69521..70018    	 +	165	15828535	-	MYPU_0640	R	ABC TRANSPORTER ATP-BINDING PROTEIN	
65	 19.79 -1    70034..71458    	 +	474	15828536	-	MYPU_0650	-	ABC TRANSPORTER PERMEASE PROTEIN	
66	 22.68 -1    71473..73752    	 +	759	15828537	-	MYPU_0660	R	ABC TRANSPORTER ATP-BINDING PROTEIN	
67	 26.34       74114..74914    	 +	266	15828538	-	MYPU_0670	-	LIPOPROTEIN	
68	 31.94 +1    75081..76010    	 -	309	15828539	-	MYPU_0680	O	conserved hypothetical protein	
69	 30.15       76135..77577    	 +	480	15828540	-	MYPU_0690	L	ATP-DEPENDENT RNA HELICASE	
70	 20.29 -1    78401..78607    	 -	68	15828541	-	MYPU_0700	-	unknown; predicted coding region	
71	 23.12       79639..79824    	 +	61	15828542	-	MYPU_0710	-	unknown; predicted coding region	
72	 17.86 -2    79960..80127    	 +	55	15828543	-	MYPU_0720	-	unknown; predicted coding region	
73	 24.28       80311..81006    	 -	231	15828544	-	MYPU_0730	-	predicted coding region	
74	 17.70 -2    81360..81602    	 -	80	15828545	-	MYPU_0740	-	unknown; predicted coding region	
75	 18.30 -2    81640..81792    	 +	50	15828546	-	MYPU_0750	-	unknown; predicted coding region	
76	 19.58 -1    82641..82829    	 +	62	15828547	-	MYPU_0760	-	unknown; predicted coding region	
77	 23.93       82741..83655    	 +	304	15828548	-	MYPU_0770	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT R3 (FRAGMENT)	
78	 25.88       83710..84849    	 +	379	15828549	-	MYPU_0780	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT R3 (FRAGMENT)	
79	 23.85       85156..85482    	 -	108	15828550	-	MYPU_0790	-	unknown; predicted coding region	
80	 27.17       85553..85828    	 +	91	15828551	-	MYPU_0800	-	unknown; predicted coding region	
81	 25.00       85856..86239    	 +	127	15828552	-	MYPU_0810	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT)	
82	 28.03       86433..87431    	 +	332	15828553	-	MYPU_0820	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT)	
83	 20.74 -1    87468..88547    	 +	359	15828554	-	MYPU_0830	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT S3A	
84	 23.11       88549..89595    	 -	348	15828555	-	MYPU_0840	L	RESTRICTION-MODIFICATION ENZYME SUBUNIT S3B	
85	 28.25       89890..90381    	 -	163	15828556	-	MYPU_0850	-	unknown; predicted coding region	
86	 25.53       90469..90942    	 +	157	15828557	-	MYPU_0860	R	conserved hypothetical protein	
87	 24.67       90932..91312    	 -	126	15828558	-	MYPU_0870	L	DNA-BINDING PROTEIN HU	
88	 28.90       91276..92583    	 -	435	15828559	-	MYPU_0880	R	GTP-BINDING PROTEIN	
89	 28.57       92561..93232    	 -	223	15828560	-	MYPU_0890	F	CYTIDYLATE KINASE (CK) (CYTIDINE MONOPHOSPHATE KINASE) (CMP KINASE)	
90	 20.37 -1    93239..93670    	 -	143	15828561	-	MYPU_0900	-	unknown; predicted coding region	
91	 27.50       93745..93864    	 -	39	15828562	-	MYPU_0910	-	unknown; predicted coding region	
92	 29.26       93935..95749    	 +	604	15828563	-	MYPU_0920	-	LIPOPROTEIN	
93	 29.46       95918..98341    	 -	807	15828564	-	MYPU_0930	J	LEUCYL-TRNA SYNTHETASE (LEUCINE--TRNA LIGASE)	
94	 26.81       98487..99620    	 +	377	15828565	-	MYPU_0940	S	conserved hypothetical protein	
95	 26.30       99647..100783   	 +	378	15828566	-	MYPU_0950	L	METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE (6-O-METHYLGUANINE-DNA METHYLTRANSFERASE) (O-6-METHYLGUANINE-DNA-ALKYLTRANSFERASE)	
96	 29.79      100778..102751   	 -	657	15828567	-	MYPU_0960	L	EXCINUCLEASE ABC SUBUNIT B	
97	 26.89      102808..103257   	 +	149	15828568	-	MYPU_0970	H	LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN KDTB HOMOLOG	
98	 31.68 +1   103276..104730   	 -	484	15828569	-	MYPU_0980	-	MULTIPLE SUGAR ABC TRANSPORTER PROTEIN, LIPOPROTEIN	
99	 24.93      104711..106471   	 -	586	15828570	-	MYPU_0990	-	MULTIPLE SUGAR ABC TRANSPORTER ATP-BINDING PROTEIN	
100	 26.07      106472..107338   	 -	288	15828571	-	MYPU_1000	G	MULTIPLE SUGAR ABC TRANSPORTER PERMEASE PROTEIN	

 
 27.05 MEAN 
 
 4.11  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.