IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae, complete genome - 0..816394
689 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.86 -1      692..1834     	 +	380	13507740	dnaN	MPN001	L	DNA polymerase III beta subunit	
2	 42.58        1838..2767     	 +	309	13507741	xdj1	MPN002	O	similar to j-domain of DnaJ	
3	 45.67 +1     2869..4821     	 +	650	13507742	gyrB	MPN003	L	DNA gyrase subunit B	
4	 45.56 +1     4821..7340     	 +	839	13507743	gyrA	MPN004	L	DNA gyrase subunit A	
5	 45.37 +1     7312..8574     	 +	420	13507744	serS	MPN005	J	seryl-tRNA synthetase	
6	 45.50 +1     8579..9211     	 +	210	13507745	-	MPN006	F	thymidylate kinase	
7	 42.52        9184..9945     	 +	253	13507746	holB	MPN007	L	similar to DNA-polymerase subunits	
8	 41.91        9947..11275    	 +	442	13507747	thdF	MPN008	R	thiophene and furan oxidation protein	
9	 39.69       11275..12060    	 +	261	13507748	yabD	MPN009	L	hydrolase	
10	 36.62       12257..12652    	 +	131	13507749	-	MPN010	-	hypothetical protein	
11	 28.16 -2    12838..13533    	 -	231	13507750	-	MPN011	-	conserved hypothetical protein	
12	 31.36 -1    13558..14265    	 -	235	13507751	D12_orf235	MPN012	-	conserved hypothetical protein	
13	 39.66       14992..15765    	 +	257	13507752	-	MPN013	-	hypothetical protein	
14	 35.21 -1    15867..16505    	 +	212	13507753	dnaE	MPN014	L	conserved hypothetical protein	
15	 36.01       16482..17339    	 -	285	13507754	-	MPN015	H	conserved hypothetical protein	
16	 38.29       17339..18205    	 -	288	13507755	rimK	MPN016	H	similar to ribosomal S6 modification protein	
17	 42.35       18180..18989    	 -	269	13507756	mtd1	MPN017	H	5,10-methylene-tetrahydrofolate dehydrogenase	
18	 41.99       19325..21196    	 +	623	13507757	pmd1	MPN018	Q	transport ATP-binding protein	
19	 42.47       21108..23012    	 +	634	13507758	msbA	MPN019	Q	transport ATP-binding protein	
20	 41.97       23022..26114    	 +	1030	13507759	yb95	MPN020	K	similar to helicases	
21	 45.52 +1    26160..27332    	 +	390	13507760	dnaJ	MPN021	O	heat shock protein DnaJ	
22	 43.55       27316..28245    	 +	309	13507761	pip	MPN022	R	proline iminopeptidase	
23	 41.78       28245..29783    	 +	512	13507762	metS	MPN023	J	methionyl-tRNA synthetase	
24	 40.59       29804..30244    	 +	146	13507763	rpoE	MPN024	K	DNA-directed RNA polymerase delta subunit	
25	 43.83       30244..31110    	 +	288	13507764	tsr	MPN025	G	fructose-bisphosphate aldolase	
26	 42.98       31111..32199    	 +	362	13507765	yyaF	MPN026	R	similar to GTPases	
27	 40.48       32202..33026    	 -	274	13507766	-	MPN027	J	hypothetical protein	
28	 39.78       33059..33958    	 +	299	13507767	trsB	MPN028	M	sugar transferase	
29	 41.54       33979..34551    	 +	190	13507768	efp	MPN029	J	elongation factor P	
30	 41.81       34469..34975    	 +	168	13507769	-	MPN030	K	conserved hypothetical protein	
31	 41.83       34975..35586    	 +	203	13507770	-	MPN031	-	conserved hypothetical protein	
32	 38.84       35810..36136    	 -	108	13507771	-	MPN032	R	hydrolase	
33	 42.51       36140..36760    	 -	206	13507772	upp	MPN033	F	uracil phosphoribosyltransferase	
34	 43.91       36800..41131    	 -	1443	13507773	polC	MPN034	L	DNA polymerase III (dnaE) alpha chain	
35	 41.93       41409..43409    	 +	666	13507774	-	MPN035	-	conserved hypothetical protein	
36	 39.71       43581..45602    	 +	673	13507775	-	MPN036	-	conserved hypothetical protein	
37	 33.56 -1    45770..46213    	 +	147	13507776	-	MPN037	-	hypothetical protein	
38	 34.19 -1    46442..46792    	 -	116	13507777	-	MPN038	-	hypothetical protein	
39	 36.38       47194..48210    	 +	338	13507778	-	MPN039	-	conserved hypothetical protein	
40	 36.54       48105..48416    	 -	103	13507779	-	MPN040	-	conserved hypothetical protein	
41	 36.01       48670..49230    	 +	186	13507780	-	MPN041	-	conserved hypothetical protein	
42	 37.10       49292..51310    	 +	672	13507781	-	MPN042	-	conserved hypothetical protein	
43	 40.00       51634..52428    	 +	264	13507782	glpF	MPN043	G	glycerol uptake facilitator	
44	 43.23       52475..53050    	 -	191	13507783	tdk	MPN044	F	thymidine kinase	
45	 45.22 +1    53077..54321    	 +	414	13507784	hisS	MPN045	J	histidyl-tRNA synthetase	
46	 42.95       54293..55966    	 +	557	13507785	aspS	MPN046	J	aspartyl-tRNA synthetase	
47	 41.89       55942..57297    	 +	451	13507786	-	MPN047	H	similar to nicotinate phosphoribosyl transferase	
48	 37.83       57886..59442    	 +	518	13507787	-	MPN048	-	membrane export protein family	
49	 38.18       59619..61517    	 +	632	13507788	-	MPN049	-	membrane export protein family	
50	 40.21       61977..63503    	 -	508	13507789	glpK	MPN050	C	glycerol kinase	
51	 39.39       63494..64648    	 -	384	13507790	glpD	MPN051	R	glycerol-3-phospate dehydrogenase	
52	 35.66       64831..66804    	 +	657	13507791	-	MPN052	N	putative lipoprotein, MG040 homolog, from M. genitalium	
53	 38.58       66822..67088    	 +	88	13507792	ptsH	MPN053	G	phosphocarrier protein HPr	
54	 30.11 -2    68627..68998    	 +	123	13507793	-	MPN054	-	conserved hypothetical protein	
55	 38.44       70404..72086    	 +	560	13507794	potA	MPN055	E	spermidine/putrescine transport ATP-binding prot	
56	 38.68       72088..72948    	 +	286	13507795	potB	MPN056	E	spermidine/putrescine transport system permease	
57	 39.84       72941..73801    	 +	286	13507796	potI	MPN057	E	spermidine/putrescine transport system permease	
58	 38.20       73786..75243    	 +	485	13507797	-	MPN058	E	conserved hypothetical protein	
59	 43.33       75243..76202    	 +	319	13507798	gcp	MPN059	O	o-sialoglycoprotein endopeptidase	
60	 42.97       76186..77337    	 +	383	13507799	metX	MPN060	H	S-adenosylmethionine synthetase 2	
61	 44.05       77625..78977    	 -	450	13507800	ffh	MPN061	N	signal recognition particle protein	
62	 46.58 +1    79033..79749    	 +	238	13507801	deoD	MPN062	F	purine-nucleoside phosphorylase	
63	 41.93       79753..80427    	 +	224	13507802	deoC	MPN063	F	deoxyribose-phosphate aldolase	
64	 42.81       80414..81679    	 +	421	13507803	deoA	MPN064	F	thymidine phosphorylase	
65	 40.30       81690..82091    	 +	133	13507804	cdd	MPN065	F	cytidine deaminase	
66	 42.64       82081..83745    	 +	554	13507805	cpsG	MPN066	G	two functions are possible, as both enzymes are homologous to each other: phosphomannomutase or phosphoglucomutase	
67	 41.12       83713..84675    	 -	320	13507806	nusG	MPN067	K	transcription antitermination factor	
68	 37.04       84683..85060    	 -	125	13507807	SecE	MPN068	N	Preprotein translocase subunit SecE	
69	 36.73       85066..85212    	 -	48	13507808	rpmG2	MPN069	J	ribosomal protein L33 type2	
70	 39.06       85228..85611    	 -	127	13507809	-	MPN070	-	hypothetical protein	
71	 42.48       85598..86428    	 -	276	13507810	yabC	MPN071	R	hypothetical protein (yabC) homolog; similar to Swiss-Prot Accession Number P37544, from B. subtilis	
72	 40.41       86410..86946    	 -	178	13507811	yabF	MPN072	L	similar to nucelotidyl transferase/polynicleotide cleavage	
73	 43.19       86925..88091    	 -	388	13507812	prs	MPN073	F	phosphoribosylpyrophosphate synthetase	
74	 39.19       87898..88341    	 -	147	13507813	-	MPN074	O	hypothetical protein (A43259) homolog; similar to GenBank Accession Number A43259, from E. hirae	
75	 37.00       88348..89247    	 +	299	13507814	ywdF	MPN075	M	Glycosyl Transferase	
76	 42.12       89299..90993    	 -	564	13507815	uhpT	MPN076	G	HYPOTHETICAL PROTEIN	
77	 40.16       91199..92839    	 -	546	13507816	-	MPN077	G	hypothetical protein	
78	 42.35       93191..95275    	 +	694	13507817	fruA	MPN078	G	fructose-permease IIBC component	
79	 40.20       95268..96170    	 +	300	13507818	fruK	MPN079	G	1-phosphofructokinase	
80	 40.88       96407..100567   	 +	1386	13507819	-	MPN080	-	Probably ABC transporter membrane protein subunit	
81	 42.13      100567..101964   	 +	465	13507820	glnQ	MPN081	R	glutamine transport ATP-binding protein	
82	 45.04      101985..103931   	 +	648	13507821	tklB	MPN082	G	transketolase 1	
83	 40.89      103941..105542   	 +	533	13507822	-	MPN083	-	only a conserved hypothetical,MG067 homolog, from M. genitalium	
84	 38.60      105592..107166   	 +	524	13507823	-	MPN084	-	conserved hypothetical protein	
85	 27.74 -2   107273..108595   	 +	440	13507824	-	MPN085	-	adhesin P1 (group2) homolog	
86	 27.67 -2   108857..109174   	 +	105	13507825	-	MPN086	-	adhesin P1 (group2) homolog	
87	 28.70 -2   109346..109798   	 +	150	13507826	-	MPN087	-	adhesin P1 (group2) homolog	
88	 31.05 -1   110813..111118   	 +	101	13507827	-	MPN088	-	hypothetical protein	
89	 35.22 -1   111610..112617   	 +	335	13507828	hsdS	MPN089	L	hypothetical protein	
90	 30.91 -1   112772..113761   	 +	329	13507829	-	MPN090	-	adhesin P1 (group2) homolog	
91	 52.04 +2   113838..114254   	 +	138	13507830	-	MPN091	-	conserved hypothetical protein	
92	 51.15 +2   114572..115093   	 +	173	13507831	-	MPN092	-	involved in cytadherence	
93	 53.20 +2   114948..115853   	 +	301	13507832	-	MPN093	-	involved in cytadherence	
94	 37.12      116287..116709   	 +	140	13507833	-	MPN094	-	hypothetical protein	
95	 42.48      123290..124054   	 +	254	13507834	-	MPN095	E	aa_permeases	
96	 41.38      124054..124848   	 +	264	13507835	-	MPN096	E	aa_permeases	
97	 38.01      125024..126649   	 +	541	13507836	-	MPN097	-	conserved hypothetical protein	
98	 39.64      126947..127390   	 +	147	13507837	-	MPN098	-	conserved hypothetical protein	
99	 54.21 +2   128076..129119   	 +	347	13507838	-	MPN099	-	hypothetical protein	
100	 36.41      129458..130009   	 +	183	13507839	-	MPN100	-	hypothetical protein	

 
 40.26 MEAN 
 
 4.85  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.