IslandPath Analysis: Mycoplasma penetrans



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans, complete genome - 0..1358633
1037 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 23.18           1..1359     	 +	452	26553453	-	MYPE10	L	chromosomal replication initiator protein	
2	 25.33        1450..2586     	 +	378	26553454	-	MYPE20	L	DNA polymerase III subunit beta	
3	 29.13        3002..4951     	 +	649	26553455	-	MYPE30	L	DNA gyrase subunit B	
4	 29.08        4970..7483     	 +	837	26553456	-	MYPE40	L	DNA gyrase subunit A	
5	 26.90        8390..8995     	 +	201	26553457	-	MYPE50	L	transposase	
6	 23.58        9286..9654     	 +	122	26553458	-	MYPE60	L	transposase	
7	 18.82 -2     9776..9961     	 +	61	26553459	-	MYPE70	-	transposase	
8	 27.66       12011..12838    	 +	275	26553460	-	MYPE80	D	Soj protein	
9	 23.79       12851..13678    	 +	275	26553461	-	MYPE90	-	hypothetical protein	
10	 25.51       13682..14167    	 +	161	26553462	-	MYPE100	J	rRNA methylase	
11	 29.63 +1    14264..14506    	 -	80	26553463	-	MYPE110	-	hypothetical protein	
12	 27.23       14624..15082    	 -	152	26553464	-	MYPE120	-	hypothetical protein	
13	 23.07       15438..16343    	 -	301	26553465	-	MYPE130	J	pseudouridine synthase	
14	 25.26       16424..16906    	 +	160	26553466	-	MYPE140	O	peroxiredoxin	
15	 24.19       17109..18683    	 +	524	26553467	-	MYPE150	-	hypothetical protein	
16	 28.44       18805..19704    	 +	299	26553468	-	MYPE160	M	UTP-glucose-1-phosphate uridylyltransferase	
17	 25.18       19895..21451    	 -	518	26553469	-	MYPE170	-	transposase	
18	 29.29       21634..24378    	 +	914	26553470	-	MYPE180	-	hypothetical protein	
19	 28.43       24393..28433    	 +	1346	26553471	-	MYPE190	-	hypothetical protein	
20	 25.96       28477..31512    	 +	1011	26553472	-	MYPE200	G	phosphoglycerate mutase	
21	 26.58       31521..32438    	 +	305	26553473	-	MYPE210	G	triose phosphate isomerase	
22	 22.27 -1    32759..34078    	 +	439	26553474	-	MYPE220	J	cysteinyl-tRNA synthetase	
23	 22.32 -1    34086..34802    	 +	238	26553475	-	MYPE230	J	rRNA methylase	
24	 20.65 -1    34793..35407    	 +	204	26553476	-	MYPE240	-	conserved hypothetical protein	
25	 30.98 +1    35628..36095    	 +	155	26553477	-	MYPE250	J	ribosomal protein L11	
26	 29.18       36106..37116    	 +	336	26553478	-	MYPE260	J	ribosomal protein L1	
27	 21.05 -1    37157..38092    	 -	311	26553479	-	MYPE270	M	glycosyltransferase	
28	 23.46       38104..38559    	 -	151	26553480	-	MYPE280	-	hypothetical protein	
29	 34.04 +2    39162..39584    	 +	140	26553481	-	MYPE290	J	ribosomal protein S12	
30	 28.63       39599..40066    	 +	155	26553482	-	MYPE300	J	ribosomal protein S7	
31	 32.94 +1    40085..42133    	 +	682	26553483	-	MYPE310	J	elongation factor G	
32	 35.78 +2    42293..43477    	 +	394	26553484	-	MYPE320	J	elongation factor Tu	
33	 35.00 +2    43741..44757    	 +	338	26553485	-	MYPE330	-	hypothetical protein	
34	 27.40       44860..45213    	 +	117	26553486	-	MYPE340	-	conserved hypothetical protein	
35	 20.94 -1    45182..45544    	 +	120	26553487	-	MYPE350	I	holo-acyl carrier protein synthase	
36	 28.09       45685..45951    	 +	88	26553488	-	MYPE360	-	hypothetical protein	
37	 26.08       46091..46903    	 +	270	26553489	-	MYPE370	I	1-acyl-sn-glycerol-3-phosphate acyltransferase	
38	 23.97       46920..47795    	 +	291	26553490	-	MYPE380	S	conserved hypothetical protein	
39	 30.30 +1    47785..48378    	 +	197	26553491	-	MYPE390	K	conserved hypothetical protein	
40	 28.51       48388..48615    	 +	75	26553492	-	MYPE400	S	conserved hypothetical protein	
41	 22.99       48615..49175    	 +	186	26553493	-	MYPE410	R	predicted GTP-binding protein	
42	 24.40       49185..51803    	 +	872	26553494	-	MYPE420	J	valyl-tRNA synthetase	
43	 24.84       52584..53678    	 +	364	26553495	-	MYPE430	R	predicted competence protein	
44	 20.89 -1    53570..55570    	 +	666	26553496	-	MYPE440	-	conserved hypothetical protein	
45	 20.23 -1    55583..56521    	 +	312	26553497	-	MYPE450	L	conserved hypothetical protein	
46	 27.01       56499..57842    	 +	447	26553498	-	MYPE460	-	putative integral membrane protein	
47	 26.21       57935..58846    	 +	303	26553499	-	MYPE470	-	putative integral membrane protein	
48	 28.27       58901..59137    	 -	78	26553500	-	MYPE480	J	ribosomal protein S20	
49	 24.78       59212..60006    	 +	264	26553501	-	MYPE490	-	conserved hypothetical protein	
50	 25.29       59967..60923    	 +	318	26553502	-	MYPE500	J	methionyl-tRNA formyltransferase	
51	 29.45       60933..62735    	 +	600	26553503	-	MYPE510	M	GTP-binding membrane protein	
52	 27.30       62857..64464    	 +	535	26553504	-	MYPE520	F	CTP synthetase	
53	 22.42 -1    64475..65299    	 +	274	26553505	-	MYPE530	R	predicted GTPase	
54	 24.16       65383..65916    	 +	177	26553506	-	MYPE540	L	conserved hypothetical protein	
55	 18.75 -2    66016..66447    	 +	143	26553507	-	MYPE550	-	hypothetical protein	
56	 28.71       66469..67377    	 +	302	26553508	-	MYPE560	C	ATP synthase subunit A	
57	 32.49 +1    67456..67692    	 +	78	26553509	-	MYPE570	C	ATP synthase subunit C	
58	 25.85       67714..68301    	 +	195	26553510	-	MYPE580	C	ATP synthase subunit B	
59	 22.05 -1    68318..68884    	 +	188	26553511	-	MYPE590	C	ATP synthase subunit delta	
60	 28.34       68887..70428    	 +	513	26553512	-	MYPE600	C	ATP synthase subunit alpha	
61	 24.27       70439..71299    	 +	286	26553513	-	MYPE610	C	ATP synthase subunit gamma	
62	 28.20       71301..73637    	 +	778	26553514	-	MYPE620	C	ATP synthase subunit beta	
63	 23.28       73649..74056    	 +	135	26553515	-	MYPE630	C	ATP synthase subunit epsilon	
64	 27.55       74150..74443    	 +	97	26553516	-	MYPE640	J	ribosomal protein L31	
65	 28.98       74531..75610    	 +	359	26553517	-	MYPE650	J	peptide chain release factor 1	
66	 23.94       75576..76448    	 +	290	26553518	-	MYPE660	J	S-adenosylmethionine-dependent methyltransferase	
67	 22.12 -1    76451..77092    	 +	213	26553519	-	MYPE670	J	predicted translation factor	
68	 26.21       77058..77534    	 +	158	26553520	-	MYPE680	G	ribose 5-phosphate and galactose-6-phosphate isomerase	
69	 23.79       77536..78258    	 +	240	26553521	-	MYPE690	T	putative two-component response regulator	
70	 29.90 +1    78521..79102    	 +	193	26553522	-	MYPE700	R	predicted intracellular protease	
71	 26.35       79238..80254    	 +	338	26553523	-	MYPE710	K	heat-inducible transcription repressor	
72	 18.68 -2    80229..80774    	 +	181	26553524	-	MYPE720	-	hypothetical protein	
73	 25.50       80780..82618    	 +	612	26553525	-	MYPE730	H	deoxyxylulose-5-phosphate synthase	
74	 21.32 -1    82797..83687    	 +	296	26553526	-	MYPE740	-	conserved hypothetical protein	
75	 22.42 -1    83702..84031    	 -	109	26553527	-	MYPE750	-	hypothetical protein	
76	 27.78       84059..84310    	 +	83	26553528	-	MYPE760	O	nitrogen fixation protein	
77	 28.64       84320..86344    	 +	674	26553529	-	MYPE770	G	transketolase	
78	 28.79       86502..87998    	 +	498	26553530	-	MYPE780	G	pyruvate kinase	
79	 29.70 +1    88217..92344    	 +	1375	26553531	-	MYPE790	K	DNA-directed RNA polymerase subunit beta	
80	 29.04       92365..96231    	 +	1288	26553532	-	MYPE800	K	DNA-directed RNA polymerase subunit beta'	
81	 27.44       96331..96771    	 +	146	26553533	-	MYPE810	J	ribosomal protein L13	
82	 30.53 +1    96789..97181    	 +	130	26553534	-	MYPE820	J	ribosomal protein S9	
83	 23.74       97919..98137    	 +	72	26553535	-	MYPE830	-	hypothetical protein	
84	 22.69       98295..98510    	 +	71	26553536	-	MYPE835	-	hypothetical protein	
85	 26.16       98853..99674    	 +	273	26553537	-	MYPE840	R	predicted haloacid dehalogenase-like hydrolase	
86	 28.74      100051..102228   	 -	725	26553538	-	MYPE850	F	ribonucleoside diphosphate reductase subunit alpha	
87	 26.44      102261..102710   	 -	149	26553539	-	MYPE860	F	ribonucleotide reductase	
88	 30.10 +1   102713..103732   	 -	339	26553540	-	MYPE870	F	ribonucleotide diphosphate reductase subunit beta	
89	 26.25      104027..109387   	 +	1786	26553541	-	MYPE880	-	predicted permeases	
90	 26.77      109575..114956   	 +	1793	26553542	-	MYPE890	-	predicted permeases	
91	 27.07      115033..116757   	 -	574	26553543	-	MYPE900	V	conserved hypothetical protein	
92	 24.01      116865..117722   	 -	285	26553544	-	MYPE910	-	putative membrane integrated oxidoreductase	
93	 23.93      117724..118446   	 -	240	26553545	-	MYPE920	-	hypothetical protein	
94	 20.62 -1   118459..118875   	 -	138	26553546	-	MYPE930	-	hypothetical protein	
95	 29.99 +1   119066..120202   	 +	378	26553547	-	MYPE940	H	S-adenosylmethionine synthetase	
96	 20.67 -1   120286..120885   	 -	199	26553548	-	MYPE950	-	hypothetical protein	
97	 25.52      121160..122272   	 -	370	26553549	-	MYPE960	V	ABC transporter ATP-binding protein	
98	 26.76      122274..124313   	 -	679	26553550	-	MYPE970	-	predicted integral membrane protein	
99	 26.74      124534..124806   	 +	90	26553551	-	MYPE980	O	chaperonin GroES	
100	 29.98 +1   124836..126473   	 +	545	26553552	-	MYPE990	O	chaperonin GroEL	

 
 26.11 MEAN 
 
 3.47  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.