IslandPathversion 1.0

IslandPath Analysis: Methanococcus jannaschii DSM2661



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.69 STD DEV: 3.75
Methanococcus jannaschii complete genome - 0..1664970
1729 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.69        2216..3343     	 -	375	15668173	MJ0001	MJ0001	E	aspartate aminotransferase (aspB1)	
2	 31.69        3340..4071     	 -	243	15668174	MJ0002	MJ0002	R	M. jannaschii predicted coding region MJ0002	
3	 26.54 -1     4911..5381     	 +	156	15668175	MJ0003	MJ0003	S	M. jannaschii predicted coding region MJ0003	
4	 31.56        5378..6109     	 +	243	15668176	MJ0004	MJ0004	I	(R)-2-hydroxyglutaryl-CoA dehydratase activator	
5	 35.18        6111..7250     	 -	379	15668177	MJ0005	MJ0005	C	formate dehydrogenase, beta subunit	
6	 32.63        7338..8474     	 -	378	15668178	MJ0006	MJ0006	C	formate dehydrogenase, alpha subunit	
7	 34.49        8884..10005    	 +	373	15668179	MJ0007	MJ0007	E	2-hydroxyglutaryl-CoA dehydratase, subunit beta (hgdB)	
8	 30.77       10075..10737    	 +	220	15668180	MJ0008	MJ0008	G	M. jannaschii predicted coding region MJ0008	
9	 32.37       10743..11573    	 +	276	15668181	MJ0009	MJ0009	-	M. jannaschii predicted coding region MJ0009	
10	 33.64       11581..12867    	 +	428	15668182	MJ0010	MJ0010	G	BcpC phosphonopyruvate decarboxylase	
11	 29.46       12869..13462    	 +	197	15668183	MJ0011	MJ0011	-	M. jannaschii predicted coding region MJ0011	
12	 34.98       13424..14332    	 -	302	15669879	-	MJ0012m	L	transposase-related protein	
13	 31.29       14348..14836    	 -	162	15668184	MJ0013	MJ0013	L	M. jannaschii predicted coding region MJ0013	
14	 32.87       14817..15458    	 -	213	15668185	MJ0014	MJ0014	L	conserved hypothetical protein	
15	 31.99       15511..15807    	 +	98	15668186	MJ0015	MJ0015	E	conserved hypothetical protein	
16	 32.20       16240..16416    	 -	58	15668187	MJ0016	MJ0016	-	M. jannaschii predicted coding region MJ0016	
17	 33.18       16806..17450    	 +	214	15668188	MJ0017	MJ0017	L	transposase, similar to IS240	
18	 28.19       17658..19232    	 +	524	15668189	MJ0018	MJ0018	-	M. jannaschii predicted coding region MJ0018	
19	 34.39       19229..21121    	 -	630	15668190	MJ0019	MJ0019	J	Glu-tRNA amidotransferase (gatB)	
20	 33.49       21148..22401    	 -	417	15668191	MJ0020	MJ0020	E	asparaginase (ansA)	
21	 31.03       22762..23889    	 +	375	15668192	MJ0021	MJ0021	R	conserved hypothetical protein	
22	 30.39       24003..25091    	 +	362	15668193	MJ0022	MJ0022	H	cobalamin biosynthesis protein (cbiD)	
23	 26.05 -1    25284..25640    	 +	118	15668194	MJ0023	MJ0023	-	M. jannaschii predicted coding region MJ0023	
24	 27.86 -1    25686..26105    	 -	139	15668195	MJ0024	MJ0024	S	conserved hypothetical protein	
25	 32.35       26106..27122    	 -	338	15668196	MJ0025	MJ0025	K	hypothetical protein	
26	 27.64 -1    27134..27958    	 -	274	15668197	MJ0026	MJ0026	J	proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family	
27	 25.59 -1    28018..28572    	 -	184	15668198	MJ0027	MJ0027	-	M. jannaschii predicted coding region MJ0027	
28	 32.08       28514..29473    	 -	319	15668199	MJ0028	MJ0028	H	thiamine monphosphate kinase (thiL)	
29	 37.50 +1    29838..31085    	 +	415	15669896	-	MJ0029	C	coenzyme F420-reducing hydrogenase, alpha subunit, selenocysteine-containing	
30	 33.33       31255..31806    	 +	183	15668200	MJ0030	MJ0030	C	coenzyme F420-reducing hydrogenase, delta subunit (frcD)	
31	 38.96 +1    31799..32491    	 +	230	15668201	MJ0031	MJ0031	C	coenzyme F420-reducing hydrogenase, gamma subunit	
32	 37.04 +1    32511..33374    	 +	287	15668202	MJ0032	MJ0032	C	coenzyme F420-reducing hydrogenase, beta subunit (frhB)	
33	 34.69       33629..35248    	 +	539	15668203	MJ0033	MJ0033	C	succinate dehydrogenase, flavoprotein subunit (sdhA)	
34	 34.28       35437..36387    	 -	316	15668204	MJ0034	MJ0034	R	conserved hypothetical protein	
35	 34.53       36529..37281    	 -	250	15668205	MJ0035	MJ0035	R	ABC transporter subunit	
36	 38.96 +1    37551..38012    	 +	153	15668206	MJ0036	MJ0036	J	SSU ribosomal protein S15P (rpsO)	
37	 29.01       38073..38789    	 +	238	15668207	MJ0037	MJ0037	R	conserved hypothetical protein	
38	 30.28       38790..39443    	 -	217	15668208	MJ0038	MJ0038	J	conserved hypothetical protein	
39	 31.61       39651..39998    	 -	115	15668209	MJ0039	MJ0039	S	conserved hypothetical protein	
40	 37.04 +1    40098..40394    	 -	98	15668210	MJ0040	MJ0040	J	LSU ribosomal protein L21E	
41	 31.28       40474..41838    	 -	454	15668211	MJ0041	MJ0041	J	conserved hypothetical protein	
42	 31.64       41880..42527    	 -	215	15668212	MJ0042	MJ0042	-	M. jannaschii predicted coding region MJ0042	
43	 31.98       42755..45112    	 +	785	15668213	MJ0043	MJ0043	S	intein containing hypothetical protein	
44	 29.50       45117..45899    	 -	260	15668214	MJ0044	MJ0044	R	conserved hypothetical protein	
45	 26.73 -1    45904..46569    	 -	221	15668215	MJ0045	MJ0045	Q	conserved hypothetical protein	
46	 28.24       46566..47351    	 -	261	15668216	MJ0046	MJ0046	Q	conserved hypothetical protein	
47	 31.39       47370..48656    	 -	428	15668217	MJ0047	MJ0047	J	putative mRNA 3'-end processing factor 1	
48	 33.65       48846..49163    	 +	105	15668218	MJ0047.1	MJ0047.1	-	M. jannaschii predicted coding region MJ0047.1	
49	 32.75       49516..50202    	 -	228	15668219	MJ0048	MJ0048	J	conserved hypothetical protein	
50	 33.71       50206..50469    	 -	87	15668220	MJ0049	MJ0049	J	LSU ribosomal protein L31E	
51	 32.83       51047..52237    	 -	396	15668221	MJ0050	MJ0050	E	group II decarboxylase	
52	 37.07 +1    52347..52694    	 +	115	15668222	MJ0051	MJ0051	S	conserved hypothetical protein	
53	 30.94       52706..53374    	 -	222	15668223	MJ0052	MJ0052	R	conserved hypothetical protein	
54	 27.34 -1    53385..54068    	 -	227	15668224	MJ0053	MJ0053	R	M. jannaschii predicted coding region MJ0053	
55	 31.80       54156..55001    	 -	281	15668225	MJ0054	MJ0054	S	conserved hypothetical protein	
56	 32.31       55080..55763    	 -	227	15668226	MJ0055	MJ0055	H	GTP cyclohydrolase II (ribA)	
57	 28.95       55756..56166    	 -	136	15668227	MJ0056	MJ0056	K	conserved hypothetical protein	
58	 34.04       56182..57462    	 -	426	15668228	MJ0057	MJ0057	P	Na+/H+ antiporter	
59	 37.59 +1    57588..58763    	 -	391	15668229	MJ0058	MJ0058	P	ammonium transporter (amtB)	
60	 37.46 +1    58979..59317    	 +	112	15668230	MJ0059	MJ0059	E	nitrogen regulatory protein P-II (glnB)	
61	 32.02       59467..60225    	 +	252	15668231	MJ0060	MJ0060	F	methylthioadenosine phosphorylase (mtaP)	
62	 24.28 -1    60363..60605    	 +	80	15668232	MJ0061	MJ0061	C	ferredoxin	
63	 29.01       60618..61241    	 +	207	15668233	MJ0062	MJ0062	J	hypothetical protein	
64	 24.73 -1    61313..61858    	 +	181	15668234	MJ0063	MJ0063	-	M. jannaschii predicted coding region MJ0063	
65	 25.96 -1    61888..62457    	 +	189	15668235	MJ0064	MJ0064	-	M. jannaschii predicted coding region MJ0064	
66	 29.49       62460..63551    	 -	363	15668236	MJ0065	MJ0065	S	conserved hypothetical protein	
67	 31.53       63654..65096    	 -	480	15668237	MJ0066	MJ0066	E	sulfate adenylate transferase, subunit 2 (cysD)	
68	 33.01       65160..65471    	 +	103	15668238	MJ0067	MJ0067	S	M. jannaschii predicted coding region MJ0067	
69	 33.62       65514..65861    	 -	115	15668239	MJ0068	MJ0068	S	conserved hypothetical protein	
70	 36.99 +1    66007..66909    	 +	300	15668240	MJ0069	MJ0069	E	acetylglutamate kinase (argB)	
71	 28.92       66966..67214    	 +	82	15668241	MJ0070	MJ0070	-	M. jannaschii predicted coding region MJ0070	
72	 26.74 -1    67211..67483    	 +	90	15668242	MJ0071	MJ0071	S	conserved hypothetical protein	
73	 28.15       67562..67696    	 +	44	15668243	MJ0072	MJ0072	-	M. jannaschii predicted coding region MJ0072	
74	 28.01       67729..68010    	 +	93	15668244	MJ0073	MJ0073	-	M. jannaschii predicted coding region MJ0073	
75	 27.86 -1    68013..69089    	 -	358	15668245	MJ0074	MJ0074	-	M. jannaschii predicted coding region MJ0074	
76	 30.15       69233..70330    	 -	365	15668246	MJ0075	MJ0075	-	M. jannaschii predicted coding region MJ0075	
77	 29.59       70391..71539    	 -	382	15668247	MJ0077	MJ0077	S	conserved hypothetical protein	
78	 30.12       71620..71961    	 +	113	15668248	MJ0076	MJ0076	-	conserved hypothetical protein)	
79	 26.44 -1    72051..72674    	 -	207	15668249	MJ0078	MJ0078	-	M. jannaschii predicted coding region MJ0078	
80	 29.75       72664..73806    	 -	380	15668250	MJ0079	MJ0079	R	regulatory protein, putative (moxR)	
81	 32.03       73799..74182    	 -	127	15668251	MJ0080	MJ0080	K	conserved hypothetical protein	
82	 39.73 +2    74670..76013    	 +	447	15668252	MJ0081	MJ0081	S	methyl coenzyme M reductase II, subunit beta (mrtB)	
83	 38.33 +1    76026..76826    	 +	266	15668253	MJ0082	MJ0082	S	methyl coenzyme M reductase II, subunit gamma (mtrG)	
84	 39.90 +2    76826..78484    	 +	552	15668254	MJ0083	MJ0083	S	methyl coenzyme M reductase II, subunit alpha (mtrA)	
85	 32.67       78746..79495    	 +	249	15668255	MJ0084	MJ0084	D	CODH nickel-insertion accessory protein (cooC)	
86	 35.29       79630..80751    	 +	373	15668256	MJ0085	MJ0085	P	iron transport periplasmic binding protein, putative (ceuE)	
87	 30.21       80788..81906    	 +	372	15668257	MJ0086	MJ0086	Q	unspecified methyltransferase	
88	 36.38 +1    81930..82979    	 +	349	15668258	MJ0087	MJ0087	P	hemin permease (hemU)	
89	 25.97 -1    82998..83540    	 +	180	15668259	MJ0088	MJ0088	-	M. jannaschii predicted coding region MJ0088	
90	 31.90       83541..84305    	 +	254	15668260	MJ0089	MJ0089	P	ferric enterobactin transport ATP-binding protein	
91	 33.17       84386..85609    	 +	407	15668261	MJ0090	MJ0090	O	collagenase (prtC)	
92	 34.54       85705..86613    	 +	302	15668262	MJ0091	MJ0091	P	Na+/Ca+ exchanger protein, putative	
93	 34.97       86613..88082    	 +	489	15668263	MJ0092	MJ0092	C	heterodisulfide reductase, subunit D (hdrD)	
94	 28.67       88089..88517    	 -	142	15668264	MJ0093	MJ0093	S	M. jannaschii predicted coding region MJ0093	
95	 34.62       88561..89493    	 -	310	15668265	MJ0094	MJ0094	S	methyl coenzyme M reductase II, operon protein C (mtrC)	
96	 31.23       89565..89945    	 -	126	15668266	MJ0095	MJ0095	-	M. jannaschii predicted coding region MJ0095	
97	 28.90       89964..90752    	 -	262	15668267	MJ0096	MJ0096	-	M. jannaschii predicted coding region MJ0096	
98	 33.80       91045..91476    	 -	143	15668268	MJ0097	MJ0097	J	translation initiation factor aIF-2, subunit beta, putative (aIF2B)	
99	 32.80       91672..91857    	 -	61	15668269	MJ0098	MJ0098	J	LSU ribosomal protein L37E	
100	 32.58       92902..93297    	 -	131	15668270	MJ0099	MJ0099	C	ferredoxin II	

 
 31.69 MEAN 
 
 3.75  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.