IslandPath Analysis: Methanosarcina mazei strain Goe1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.57   STD DEV: 4.98
Methanosarcina mazei strain Goe1, complete genome - 0..4096345
3371 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 47.04         522..2126     	 +	534	21226103	-	MM0001	-	Dipeptide ABC transporter, binding protein	
2	 44.53        2677..4284     	 +	535	21226104	-	MM0002	-	Dipeptide ABC transporter, binding protein	
3	 32.39 -2     4334..4546     	 +	70	21226105	-	MM0003	-	hypothetical protein	
4	 44.31        4615..5607     	 +	330	21226106	dppB	MM0004	-	Dipeptide ABC transporter, permease protein	
5	 44.64        5630..6487     	 +	285	21226107	dppC	MM0005	-	Dipeptide ABC transporter, permease protein	
6	 41.62        6523..7500     	 +	325	21226108	dppD	MM0006	-	Dipeptide ABC transporter, ATP-binding protein	
7	 41.18        7490..8101     	 +	203	21226109	dppF	MM0007	-	Dipeptide ABC transporter, ATP-binding protein	
8	 49.48 +1     8186..9343     	 -	385	21226110	-	MM0008	-	conserved protein	
9	 51.12 +1     9608..10900    	 -	430	21226111	-	MM0009	-	conserved protein	
10	 47.42       11087..11299    	 -	70	21226112	-	MM0010	-	hypothetical protein	
11	 43.14       12748..13155    	 +	135	21226113	-	MM0011	-	conserved protein	
12	 37.98 -1    14436..14801    	 +	121	21226114	-	MM0012	-	RNA signal recognition particle 4.5S RNA	
13	 39.23       15146..15637    	 +	163	21226115	-	MM0013	-	conserved protein	
14	 37.37 -1    16177..16548    	 +	123	21226116	-	MM0014	-	Undecaprenyl pyrophosphate synthetase	
15	 44.94       16763..17365    	 -	200	21226117	-	MM0015	-	methyltransferase	
16	 48.63 +1    18916..19098    	 +	60	21226118	-	MM0016	-	translation initiation factor 1A	
17	 47.08       19760..20581    	 -	273	21226119	ubiE	MM0017	-	Ubiquinone/menaquinone biosynthesis methyltransferase	
18	 37.46 -1    21863..22201    	 +	112	21226120	-	MM0018	-	conserved protein	
19	 40.43       22682..23977    	 -	431	21226121	-	MM0019	-	conserved protein	
20	 35.91 -1    24297..25307    	 -	336	21226122	-	MM0020	-	conserved protein	
21	 37.60 -1    25929..26186    	 +	85	21226123	-	MM0021	-	conserved protein	
22	 41.39       26685..26957    	 +	90	21226124	-	MM0022	-	hypothetical protein	
23	 43.11       26958..27182    	 +	74	21226125	-	MM0023	-	conserved protein	
24	 41.67       27399..27710    	 +	103	21226126	-	MM0024	-	hypothetical protein	
25	 40.28       27707..28066    	 +	119	21226127	-	MM0025	-	hypothetical protein	
26	 38.46 -1    28927..29472    	 -	181	21226128	-	MM0026	-	conserved protein	
27	 36.21 -1    29820..30167    	 -	115	21226129	-	MM0027	-	conserved protein	
28	 33.60 -2    30530..33127    	 +	865	21226130	-	MM0028	-	Superfamily I DNA and RNA helicase	
29	 34.83 -1    33708..34109    	 +	133	21226131	-	MM0029	-	conserved protein	
30	 30.66 -2    34526..35647    	 -	373	21226132	-	MM0030	-	O-linked N-acetylglucosamine transferase	
31	 41.76       36332..36604    	 +	90	21226133	-	MM0031	-	hypothetical protein	
32	 46.22       36605..36829    	 +	74	21226134	-	MM0032	-	conserved protein	
33	 37.63 -1    36987..37358    	 -	123	21226135	-	MM0033	-	conserved protein	
34	 25.50 -2    37836..38780    	 -	314	21226136	-	MM0034	-	hypothetical protein	
35	 32.96 -2    39205..41862    	 -	885	21226137	-	MM0035	-	conserved protein	
36	 32.49 -2    42333..44348    	 +	671	21226138	-	MM0036	-	hypothetical protein	
37	 51.81 +1    44603..45847    	 -	414	21226139	-	MM0037	-	Argininosuccinate synthase	
38	 50.25 +1    46169..49390    	 -	1073	21226140	-	MM0038	-	Carbamoyl-phosphate synthase large chain	
39	 49.74 +1    49390..50529    	 -	379	21226141	-	MM0039	-	Carbamoyl-phosphate synthase small chain	
40	 42.57       51425..52777    	 +	450	21226142	otaA	MM0040	-	Glycine betaine transporter, ATP-binding protein	
41	 47.17       52774..53604    	 +	276	21226143	otaB	MM0041	-	Glycine betaine transporter, permease protein	
42	 47.45       53778..54698    	 +	306	21226144	otaC	MM0042	-	Glycine betaine transporter, substrate-binding protein	
43	 40.37       55009..57651    	 -	880	21226145	-	MM0043	-	conserved protein	
44	 45.31       58247..59089    	 +	280	21226146	-	MM0044	-	hypothetical protein	
45	 41.83       59399..60481    	 +	360	21226147	-	MM0045	-	hypothetical protein	
46	 50.10 +1    60558..61070    	 +	170	21226148	-	MM0046	-	hypothetical protein	
47	 49.65 +1    61663..63090    	 -	475	21226149	-	MM0047	-	Acetylornithine aminotransferase	
48	 48.61 +1    63093..64571    	 -	492	21226150	-	MM0048	-	Aldehyde dehydrogenase	
49	 42.93       65089..65484    	 -	131	21226151	-	MM0049	-	conserved protein	
50	 47.11       66148..68049    	 -	633	21226152	-	MM0050	-	Glutamyl-tRNA(Gln) amidotransferase	
51	 41.73       68755..69171    	 +	138	21226153	-	MM0051	-	hypothetical protein	
52	 35.58 -1    69361..70605    	 -	414	21226154	-	MM0052	-	Transposase	
53	 34.27 -1    70675..70887    	 -	70	21226155	-	MM0053	-	hypothetical protein	
54	 45.97       71424..71882    	 +	152	21226156	-	MM0054	-	Universal stress protein	
55	 50.37 +1    72307..73809    	 -	500	21226157	-	MM0055	-	tungsten formylmethanofuran dehydrogenase subunit F	
56	 50.25 +1    73806..76187    	 -	793	21226158	-	MM0056	-	Heterodisulfate reductase, subunit A	
57	 45.39       77008..77289    	 +	93	21226159	-	MM0057	-	Ferredoxin-thioredoxin reductase, catalytic chain	
58	 49.46 +1    77762..78226    	 +	154	21226160	-	MM0058	-	tungsten formylmethanofuran dehydrogenase subunit G	
59	 46.02       78236..79480    	 +	414	21226161	-	MM0059	-	tungsten formylmethanofuran dehydrogenase subunit B	
60	 44.61       79480..79878    	 +	132	21226162	-	MM0060	-	tungsten formylmethanofuran dehydrogenase subunit D	
61	 39.65       80012..80296    	 +	94	21226163	-	MM0061	-	conserved protein	
62	 47.15       80558..81223    	 -	221	21226164	-	MM0062	-	SAM-dependent methyltransferases	
63	 43.22       81389..82753    	 -	454	21226165	-	MM0063	-	surface layer protein B	
64	 42.45       83342..85348    	 -	668	21226166	-	MM0064	-	surface layer protein B	
65	 23.27 -2    85364..85522    	 -	52	21226167	-	MM0065	-	hypothetical protein	
66	 41.75       85907..89065    	 -	1052	21226168	-	MM0066	-	conserved protein	
67	 48.09       89713..91257    	 -	514	21226169	-	MM0067	-	hypothetical protein	
68	 49.27 +1    91254..92966    	 -	570	21226170	-	MM0068	-	N-methylhydantoinase (ATP-hydrolyzing)	
69	 45.94       93523..94458    	 -	311	21226171	-	MM0069	-	Sodium-dependent transporter	
70	 44.95       94842..95573    	 +	243	21226172	-	MM0070	-	putative ribosomal RNA methyltransferase	
71	 44.54       95590..96258    	 +	222	21226173	-	MM0071	-	conserved protein	
72	 49.06 +1    96455..98158    	 -	567	21226174	-	MM0072	-	Thermosome subunit	
73	 47.80       98569..99273    	 -	234	21226175	-	MM0073	-	Ribose 5-phosphate isomerase	
74	 48.84 +1    99386..100720   	 -	444	21226176	-	MM0074	-	Aspartyl-tRNA synthetase	
75	 42.74      101277..101648   	 +	123	21226177	-	MM0075	-	conserved protein	
76	 40.61      101875..102135   	 +	86	21226178	-	MM0076	-	hypothetical protein	
77	 44.92      102801..103499   	 +	232	21226179	-	MM0077	-	hypothetical protein	
78	 44.15      103957..104409   	 -	150	21226180	-	MM0078	-	Xanthine-guanine phosphoribosyltransferase	
79	 46.60      105080..105976   	 +	298	21226181	-	MM0079	-	conserved protein	
80	 43.94      106128..107258   	 -	376	21226182	-	MM0080	-	hypothetical protein	
81	 48.68 +1   107742..109103   	 -	453	21226183	-	MM0081	-	hypothetical cytosolic protein	
82	 47.31      109130..109408   	 -	92	21226184	-	MM0082	-	Phosphoserine phosphatase	
83	 15.96 -2   109586..109798   	 -	70	21226185	-	MM0083	-	hypothetical protein	
84	 42.75      109844..110374   	 -	176	21226186	-	MM0084	-	Shikimate kinase	
85	 39.62      110609..110974   	 -	121	21226187	-	MM0085	-	conserved protein	
86	 49.25 +1   111384..111917   	 -	177	21226188	-	MM0086	-	hypothetical protein	
87	 47.44      112009..113532   	 -	507	21226189	-	MM0087	-	Pyrimidine-nucleoside phosphorylase	
88	 45.21      113888..114763   	 -	291	21226190	-	MM0088	-	Transporter	
89	 38.16 -1   115136..115342   	 -	68	21226191	-	MM0089	-	hypothetical protein	
90	 39.92      115984..116226   	 -	80	21226192	-	MM0090	-	conserved protein	
91	 46.56      117271..118449   	 -	392	21226193	-	MM0091	-	ABC transporter permease protein	
92	 46.13      118499..119647   	 -	382	21226194	-	MM0092	-	conserved protein	
93	 46.80      120209..121708   	 +	499	21226195	-	MM0093	-	Cobyric acid synthase	
94	 52.79 +1   122045..122599   	 -	184	21226196	-	MM0094	-	hypothetical protein	
95	 39.39      123133..123825   	 +	230	21226197	-	MM0095	-	conserved protein	
96	 35.62 -1   124395..125663   	 +	422	21226198	-	MM0096	-	Transposase	
97	 49.15 +1   125736..126740   	 -	334	21226199	-	MM0097	-	Ornithine cyclodeaminase	
98	 45.01      126929..127639   	 +	236	21226200	-	MM0098	-	conserved protein	
99	 49.51 +1   127683..128300   	 -	205	21226201	-	MM0099	-	O-linked N-acetylglucosamine transferase	
100	 44.36      128355..128735   	 -	126	21226202	-	MM0100	-	conserved protein	

 
 43.57 MEAN 
 
 4.98  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.