IslandPath Analysis: Methanopyrus kandleri AV19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.82   STD DEV: 4.58
Methanopyrus kandleri AV19, complete genome - 0..1694969
1687 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.32         748..1806     	 -	352	20093441	RCL1	MK0001	-	RNA phosphate cyclase	
2	 59.88        1888..2403     	 -	171	20093442	IbpA	MK0002	-	Molecular chaperone (small heat shock protein)	
3	 61.85        2357..3415     	 -	352	20093443	-	MK0003	-	Predicted GTPase	
4	 61.95        3490..3807     	 +	105	20093444	RPP1A	MK0004	-	Ribosomal protein L12E/L44/L45	
5	 60.01        3811..5343     	 -	510	20093445	-	MK0005	-	Replication factor C (ATPase involved in DNA replication)	
6	 60.90        5349..7256     	 -	635	20093446	-	MK0006	-	Replication factor C (ATPase involved in DNA replication) intein containing	
7	 60.31        7315..8682     	 -	455	20093447	TIP49	MK0007	-	DNA helicase TIP49, TBP-interacting protein	
8	 55.19 -1     8796..9161     	 +	121	20093448	DsrE	MK0008	-	Uncharacterized conserved protein involved in intracellular sulfur reduction	
9	 59.20        9299..10450    	 +	383	20093449	-	MK0009	-	Uncharacterized protein specific for M.kandleri, MK-36 family	
10	 61.04       10400..11074    	 -	224	20093450	-	MK0010	-	Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family	
11	 59.86       11167..12018    	 +	283	20093451	Mtd	MK0011	-	F420 dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase	
12	 60.29       11999..12547    	 -	182	20093452	-	MK0012	-	Uncharacterized protein conserved in archaea	
13	 61.47       12672..13748    	 +	358	20093453	Hmd	MK0013	-	N5,N10-methylenetetrahydromethanopterin dehydrogenase  (H2-forming)	
14	 59.68       13791..14549    	 +	252	20093454	-	MK0014	-	Uncharacterized protein conserved in archaea	
15	 61.02       14518..15279    	 +	253	20093455	-	MK0015	-	Uncharacterized conserved protein	
16	 60.60       15236..16306    	 +	356	20093456	-	MK0016	-	Predicted enzyme related to biotin synthase	
17	 63.74       16252..17787    	 +	511	20093457	-	MK0017	-	Uncharacterized protein conserved in archaea, FLPA ortholog	
18	 63.35       17781..18263    	 +	160	20093458	-	MK0018	-	Uncharacterized protein conserved in archaea	
19	 60.41       18347..19369    	 +	340	20093459	-	MK0019	-	Predicted protease related to collagenase	
20	 59.72       19326..19685    	 +	119	20093460	-	MK0020	-	Predicted metal-binding protein	
21	 59.92       20108..20878    	 -	256	20093461	Pnp	MK0021	-	Purine nucleoside phosphorylase	
22	 59.97       20875..21456    	 -	193	20093462	Cmk	MK0022	-	Cytidylate kinase	
23	 62.28       21460..21801    	 -	113	20093463	RPL34A	MK0023	-	Ribosomal protein L34E	
24	 56.05 -1    21809..22345    	 -	178	20093464	-	MK0024	-	Uncharacterized membrane protein	
25	 59.55       22359..22934    	 -	191	20093465	AdkA	MK0025	-	Archaeal adenylate kinase	
26	 57.95       22954..24330    	 -	458	20093466	SecY	MK0026	-	Preprotein translocase subunit SecY	
27	 61.72       24397..24861    	 -	154	20093467	RplO	MK0027	-	Ribosomal protein L15	
28	 61.78       24876..25325    	 -	149	20093468	RpmD	MK0028	-	Ribosomal protein L30/L7E	
29	 61.67       25473..26153    	 -	226	20093469	RpsE	MK0029	-	Ribosomal protein S5	
30	 61.25       26170..26778    	 -	202	20093470	RplR	MK0030	-	Ribosomal protein L18	
31	 61.56       26782..27231    	 -	149	20093471	RPL19A	MK0031	-	Ribosomal protein L19E	
32	 56.77       27295..27900    	 -	201	20093472	-	MK0032	-	C4-type Zn-finger-containing protein	
33	 54.37 -1    27917..28900    	 -	327	20093473	-	MK0033	-	2-Phosphoglycerate kinase fused to conserved uncharacterized domain	
34	 51.15 -2    28904..29251    	 -	115	20093474	-	MK0034	-	Uncharacterized conserved protein	
35	 61.36       29245..30336    	 -	363	20093475	-	MK0035	-	Uncharacterized conserved protein	
36	 62.27       30390..30980    	 -	196	20093476	-	MK0036	-	Small, Ras-like GTPase	
37	 58.20       31183..31749    	 +	188	20093477	-	MK0037	-	Predicted hydrolase of the HD superfamily	
38	 55.84 -1    31721..32782    	 +	353	20093478	-	MK0038	-	Predicted RNA-binding protein	
39	 59.82       33253..34011    	 -	252	20093479	-	MK0039	-	RecA-superfamily ATPase implicated in signal transduction	
40	 62.14       34081..35229    	 +	382	20093480	-	MK0040	-	Uncharacterized conserved protein	
41	 59.31       35263..37083    	 +	606	20093481	-	MK0041	-	Uncharacterized conserved protein	
42	 61.53       37451..38404    	 -	317	20093482	-	MK0042	-	Uncharacterized protein	
43	 56.18 -1    38495..39829    	 -	444	20093483	-	MK0043	-	tRNA/rRNA cytosine-C5-methylase	
44	 61.01       40642..41649    	 -	335	20093484	-	MK0044	-	Uncharacterized Fe-S oxidoreductase	
45	 61.50       41815..42918    	 +	367	20093485	-	MK0045	-	Predicted GTPase of the YlqF family	
46	 60.62       43093..43638    	 +	181	20093486	-	MK0046	-	SAM-dependent methyltransferase	
47	 59.93       43671..44753    	 -	360	20093487	-	MK0047	-	Pyruvate-formate lyase-activating enzyme	
48	 59.97       44786..45367    	 +	193	20093488	-	MK0048	-	Uncharacterized conserved protein	
49	 60.45       45367..49032    	 +	1221	20093489	-	MK0049	-	Reverse gyrase	
50	 58.41       49029..49949    	 +	306	20093490	-	MK0050	-	Uncharacterized protein	
51	 57.73       49918..50835    	 -	305	20093491	-	MK0051	-	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	
52	 52.92 -1    50862..51494    	 +	210	20093492	GlpG	MK0052	-	Predicted membrane serine protease of the Rhomboid superfamily	
53	 62.19       51991..53284    	 +	431	20093493	AmtB	MK0053	-	Ammonia permease	
54	 62.43       53306..53659    	 +	117	20093494	-	MK0054	-	Nitrogen regulatory protein PII	
55	 58.39       53735..54652    	 -	305	20093495	-	MK0055	-	Fe-S oxidoreductase	
56	 62.77       55284..55847    	 -	187	20093496	-	MK0056	-	Uncharacterized protein conserved in archaea	
57	 60.44       55840..56433    	 -	197	20093497	-	MK0057	-	Uncharacterized conserved protein	
58	 53.69 -1    56430..56768    	 -	112	20093498	RPB11	MK0058	-	DNA-directed RNA polymerase, subunit L	
59	 60.79       56784..57464    	 -	226	20093499	-	MK0059	-	Uncharacterized protein conserved in archaea	
60	 60.41       57457..58047    	 -	196	20093500	-	MK0060	-	Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)	
61	 63.05       58044..59066    	 -	340	20093501	RecJ	MK0061	-	Single-stranded DNA-specific exonuclease	
62	 60.49       59083..59697    	 -	204	20093502	-	MK0062	-	Predicted RNA methylase	
63	 58.20       59694..59882    	 -	62	20093503	-	MK0063	-	Zn-ribbon containing protein	
64	 58.55       59908..60720    	 +	270	20093504	-	MK0064	-	Uncharacterized protein	
65	 58.20       60717..61094    	 -	125	20093505	-	MK0065	-	Uncharacterized protein	
66	 54.19 -1    61097..61705    	 -	202	20093506	TolQ	MK0066	-	Biopolymer transport protein	
67	 58.35       61681..62895    	 -	404	20093507	-	MK0067	-	Uncharacterized membrane protein	
68	 55.77 -1    62910..63524    	 -	204	20093508	-	MK0068	-	Uncharacterized protein	
69	 55.43 -1    63592..63867    	 -	91	20093509	-	MK0069	-	Uncharacterized protein	
70	 58.56       63864..65960    	 -	698	20093510	-	MK0070	-	Superfamily I DNA/RNA helicase	
71	 57.74       66184..66945    	 +	253	20093511	-	MK0071	-	ATP-utilizing enzymes of the PP-loop superfamily	
72	 57.01       66957..68126    	 -	389	20093512	-	MK0072	-	Uncharacterized protein specific for M.kandleri, MK-21 family	
73	 59.50       68133..69011    	 -	292	20093513	NadA	MK0073	-	Quinolinate synthase	
74	 58.51       69027..69896    	 -	289	20093514	-	MK0074	-	Predicted metal-dependent hydrolase of the urease superfamily	
75	 61.65       69998..70933    	 +	311	20093515	-	MK0075	-	Uncharacterized protein	
76	 60.39       70930..71757    	 +	275	20093516	-	MK0076	-	Uncharacterized domain specific for M.kandleri, MK-33 family	
77	 59.15       71931..73088    	 +	385	20093517	-	MK0077	-	Predicted GTPase or GTP-binding protein	
78	 61.56       73121..74119    	 +	332	20093518	-	MK0078	-	Predicted carbohydrate kinase of the FGGY family	
79	 56.46       74116..74928    	 +	270	20093519	TyrA_1	MK0079	-	Prephenate dehydratase	
80	 57.61       74941..75492    	 +	183	20093520	PorG_1	MK0080	-	Pyruvate:ferredoxin oxidoreductase, gamma subunit	
81	 51.85 -1    75485..75754    	 +	89	20093521	PorD	MK0081	-	Pyruvate:ferredoxin oxidoreductase, delta subunit	
82	 58.16       75767..76918    	 +	383	20093522	PorA_1	MK0082	-	Pyruvate:ferredoxin oxidoreductase, alpha subunit	
83	 60.49       76931..77821    	 +	296	20093523	PorB_1	MK0083	-	Pyruvate:ferredoxin oxidoreductase, beta subunit	
84	 62.31       77794..78321    	 +	175	20093524	-	MK0084	-	Fe-S-cluster-containing hydrogenase component	
85	 62.72       78242..79153    	 +	303	20093525	TtdA	MK0085	-	Fumarate hydratase class I, N-terminal domain	
86	 63.30       79158..79691    	 +	177	20093526	FumA	MK0086	-	Fumarate hydratase class I, C-terminal domain	
87	 61.47       79695..80291    	 +	198	20093527	-	MK0087	-	Uncharacterized protein conserved in archaea	
88	 61.06       80293..82308    	 -	671	20093528	-	MK0088	-	Predicted RNA-binding protein homologous to eukaryotic snRNP	
89	 58.21       82341..83522    	 -	393	20093529	-	MK0089	-	CBS-domain-containing protein	
90	 57.97       83620..83895    	 +	91	20093530	-	MK0090	-	Uncharacterized membrane protein, conserved in archaea	
91	 60.72       83902..85701    	 +	599	20093531	-	MK0091	-	Predicted ABC-class ATPase, RNase L inhibitor homolog	
92	 60.33       86099..86650    	 -	183	20093532	-	MK0092	-	Predicted phosphoesterase	
93	 62.74       86682..87470    	 -	262	20093533	-	MK0093	-	Uncharacterized conserved protein	
94	 61.85       87467..88255    	 -	262	20093534	-	MK0094	-	Predicted dinucleotide-utilizing enzyme	
95	 61.32       88185..88820    	 -	211	20093535	-	MK0095	-	Uncharacterized conserved protein	
96	 58.33       88832..89203    	 -	123	20093536	-	MK0096	-	Uncharacterized conserved protein	
97	 62.53       89216..90763    	 +	515	20093537	-	MK0097	-	Predicted carbamoyl transferase, NodU family	
98	 63.98       90768..91475    	 +	235	20093538	RibD	MK0098	-	Pyrimidine reductase	
99	 60.22       91472..91828    	 +	118	20093539	-	MK0099	-	Zn-ribbon-containing protein	
100	 61.84       91983..93164    	 +	393	20093540	-	MK0100	-	Uncharacterized protein specific for M.kandleri, MK-36 family	

 
 60.82 MEAN 
 
 4.58  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.