IslandPath Analysis: Methanosarcina acetivorans str. C2A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.25   STD DEV: 5.60
Methanosarcina acetivorans str. C2A, complete genome - 0..5751492
4540 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 45.53         266..1528     	 -	420	20088900	cdc6	MA0001	-	cell division control protein 6	
2	 31.48 -2     3358..3735     	 -	125	20088901	-	MA0002	-	predicted protein	
3	 42.91        3805..5349     	 +	514	20088902	-	MA0003	-	sodium:proline symporter	
4	 38.37 -1     7361..8134     	 -	257	20088903	istB	MA0004	-	IstB helper protein	
5	 41.37        8131..9375     	 -	414	20088904	-	MA0005	-	transposase	
6	 45.37        9571..10758    	 +	395	20088905	-	MA0006	-	pyridoxal-dependent decarboxylase	
7	 44.75       11359..12453    	 +	364	20088906	-	MA0007	-	conserved hypothetical protein	
8	 46.95       13031..14572    	 +	513	20088907	traB	MA0008	-	TraB family protein	
9	 40.74       14788..15084    	 -	98	20088908	-	MA0009	-	predicted protein	
10	 47.65       15444..16337    	 -	297	20088909	ftr	MA0010	-	formylmethanofuran-tetrahydromethanopterin N-formyltransferase	
11	 41.67       17080..17559    	 -	159	20088910	cheD2	MA0011	-	chemotaxis protein CheD	
12	 38.12 -1    17684..18310    	 -	208	20088911	cheC2	MA0012	-	chemotaxis protein CheC	
13	 37.16 -1    18403..19551    	 -	382	20088912	cheR	MA0013	-	cheR methyltransferase	
14	 41.93       19622..21529    	 -	635	20088913	cheA2	MA0014	-	chemotaxis sensor histidine kinase	
15	 47.99       21713..22783    	 -	356	20088914	cheB2	MA0015	-	chemotaxis protein-glutamate methylesterase	
16	 40.66       23127..23522    	 -	131	20088915	cheY2	MA0016	-	chemotaxis response regulator	
17	 24.17 -2    24606..25085    	 -	159	20088916	dyhC	MA0017	-	dynein heavy chain	
18	 41.99       25197..25577    	 +	126	20088917	-	MA0018	-	response regulator receiver	
19	 43.87       25764..27983    	 +	739	20088918	mcp-2	MA0019	-	methyl-accepting chemotaxis protein	
20	 43.78       28098..28652    	 +	184	20088919	cheW2	MA0020	-	chemotaxis signal transduction coupling protein	
21	 45.99       28662..30131    	 +	489	20088920	-	MA0021	-	high-affinity gluconate transporter (gluconate permease)	
22	 41.62       30217..30723    	 +	168	20088921	-	MA0022	-	iron dependent repressor	
23	 43.74       31065..32102    	 +	345	20088922	znuA	MA0023	-	zinc ABC transporter, solute-binding lipoprotein	
24	 49.67       32254..33018    	 +	254	20088923	znuC	MA0024	-	zinc ABC transporter, ATP-binding protein	
25	 46.30       33066..33890    	 +	274	20088924	znuB	MA0025	-	zinc ABC transporter, permease protein	
26	 42.98       34650..35105    	 +	151	20088925	-	MA0026	-	predicted protein	
27	 34.50 -1    35473..36759    	 +	428	20088926	-	MA0027	-	predicted protein	
28	 31.03 -2    37138..37572    	 -	144	20088927	-	MA0028	-	predicted protein	
29	 45.67       37882..39162    	 -	426	20088928	-	MA0029	-	predicted protein	
30	 45.34       40272..41054    	 -	260	20088929	-	MA0030	-	predicted protein	
31	 54.43 +1    41309..42199    	 -	296	20088930	porB	MA0031	-	pyruvate synthase, subunit beta	
32	 51.90 +1    42196..43407    	 -	403	20088931	porA	MA0032	-	pyruvate synthase, subunit alpha	
33	 44.44       43407..43667    	 -	86	20088932	porD	MA0033	-	pyruvate synthase, subunit delta	
34	 48.45       43664..44212    	 -	182	20088933	porG	MA0034	-	pyruvate synthase, subunit gamma	
35	 46.40       44772..45743    	 -	323	20088934	-	MA0035	-	conserved hypothetical protein	
36	 45.88       46129..46686    	 -	185	20088935	sec11	MA0036	-	signal sequence peptidase	
37	 48.39       47306..49258    	 +	650	20088936	-	MA0037	-	DNA-directed DNA polymerase, subunit 1	
38	 41.44       49629..50060    	 +	143	20088937	-	MA0038	-	predicted protein	
39	 40.18       50047..50922    	 +	291	20088938	-	MA0039	-	conserved hypothetical protein	
40	 49.13       51146..52183    	 +	345	20088939	-	MA0040	-	conserved hypothetical protein	
41	 43.37       52548..52826    	 -	92	20088940	-	MA0041	-	predicted protein	
42	 49.84       53371..54618    	 +	415	20088941	erf1	MA0042	-	peptide chain release factor	
43	 50.94 +1    54809..56512    	 +	567	20088942	argS	MA0043	-	arginyl-tRNA synthetase	
44	 34.67 -1    56493..56717    	 +	74	20088943	-	MA0044	-	predicted protein	
45	 41.98       56925..57329    	 +	134	20088944	-	MA0045	-	predicted protein	
46	 44.68       57569..58264    	 +	231	20088945	-	MA0046	-	predicted protein	
47	 45.85       58313..59023    	 +	236	20088946	-	MA0047	-	predicted protein	
48	 42.67       59191..59415    	 +	74	20088947	-	MA0048	-	predicted protein	
49	 48.41       59484..59735    	 +	83	20088948	-	MA0049	-	conserved hypothetical protein	
50	 47.20       59888..61279    	 +	463	20088949	-	MA0050	-	conserved hypothetical protein	
51	 40.55       61555..63327    	 -	590	20088950	-	MA0051	-	predicted protein	
52	 35.00 -1    63628..63927    	 +	99	20088951	-	MA0052	-	predicted protein	
53	 46.26       64281..65324    	 +	347	20088952	-	MA0053	-	conserved hypothetical protein	
54	 46.28       65547..66581    	 +	344	20088953	-	MA0054	-	conserved hypothetical protein	
55	 43.86       67212..67382    	 -	56	20088954	-	MA0055	-	conserved hypothetical protein	
56	 44.44       68394..68609    	 +	71	20088955	-	MA0056	-	conserved hypothetical protein	
57	 45.37       68667..68882    	 +	71	20088956	-	MA0057	-	conserved hypothetical protein	
58	 48.15       68941..69156    	 +	71	20088957	-	MA0058	-	conserved hypothetical protein	
59	 46.76       69205..69420    	 +	71	20088958	-	MA0059	-	conserved hypothetical protein	
60	 38.02 -1    69654..70379    	 -	241	20088959	-	MA0060	-	predicted protein	
61	 42.01       70391..71347    	 -	318	20088960	-	MA0061	-	predicted protein	
62	 47.65       71483..71908    	 +	141	20088961	-	MA0062	-	predicted protein	
63	 46.96       72017..72823    	 -	268	20088962	ssuB	MA0063	-	sulfonate ABC transporter, ATP-binding protein	
64	 44.11       72783..73571    	 -	262	20088963	ssuC	MA0064	-	sulfonate ABC transporter, permease protein	
65	 48.03       73710..74723    	 -	337	20088964	ssuA	MA0065	-	sulfonate ABC transporter, solute-binding protein	
66	 33.33 -1    74811..75035    	 -	74	20088965	-	MA0066	-	predicted protein	
67	 45.02       75144..75665    	 +	173	20088966	-	MA0067	-	conserved hypothetical protein	
68	 45.38       75866..79369    	 -	1167	20088967	-	MA0068	-	hypothetical protein (multi-domain)	
69	 49.46       79587..80603    	 -	338	20088968	hypE	MA0069	-	hydrogenase expression/formation protein	
70	 38.22 -1    80707..80931    	 +	74	20088969	-	MA0070	-	predicted protein	
71	 46.16       81193..81987    	 -	264	20088970	-	MA0071	-	radical activating enzyme	
72	 48.39       82020..84404    	 -	794	20088971	nrdD	MA0072	-	anaerobic ribonucleoside-triphosphate reductase	
73	 41.32       84671..85033    	 +	120	20088972	-	MA0073	-	predicted protein	
74	 45.77       85394..86197    	 +	267	20088973	radA	MA0074	-	DNA repair protein	
75	 46.50       86407..87507    	 -	366	20088974	-	MA0075	-	myo-inositol-1-phosphate synthase	
76	 49.09       88156..89202    	 +	348	20088975	eif2B1	MA0076	-	translation initiation factor 2B, subunit 1	
77	 50.29 +1    89765..90631    	 +	288	20088976	-	MA0077	-	predicted protein	
78	 33.84 -1    90829..92013    	 +	394	20088977	-	MA0078	-	predicted protein	
79	 33.77 -1    91916..94453    	 +	845	20088978	-	MA0079	-	hypothetical protein (multi-domain)	
80	 49.81       94605..96728    	 +	707	20088979	-	MA0080	-	conserved hypothetical protein	
81	 48.59       97659..99749    	 +	696	20088980	ppk	MA0081	-	polyphosphate kinase	
82	 34.76 -1    99815..100024   	 +	69	20088981	-	MA0082	-	predicted protein	
83	 48.47      100217..101848   	 +	543	20088982	ppx	MA0083	-	exopolyphosphatase	
84	 45.33      101895..104570   	 -	891	20088983	-	MA0084	-	hypothetical protein (multi-domain)	
85	 48.84      105273..106394   	 +	373	20088984	cdc6	MA0085	-	cell division control protein 6, subunit A	
86	 51.78 +1   106733..108391   	 -	552	20088985	hsp60-1	MA0086	-	Hsp60	
87	 45.25      109117..110610   	 +	497	20088986	-	MA0087	-	DnaK protein	
88	 43.82      110727..111479   	 +	250	20088987	-	MA0088	-	DnaJ protein	
89	 45.72      111532..112209   	 -	225	20088988	-	MA0089	-	conserved hypothetical protein	
90	 51.05 +1   112231..113850   	 -	539	20088989	pheRS	MA0090	-	phenylalanyl-tRNA synthetase, subunit alpha	
91	 44.23      114214..114846   	 -	210	20088990	-	MA0091	-	translin family protein	
92	 42.18      115645..115938   	 -	97	20088991	-	MA0092	-	conserved hypothetical protein	
93	 50.70 +1   116131..116844   	 +	237	20088992	-	MA0093	-	predicted protein	
94	 35.09 -1   116947..117288   	 -	113	20088993	-	MA0094	-	predicted protein	
95	 34.50 -1   118418..119704   	 -	428	20088994	-	MA0095	-	predicted protein	
96	 47.89      119810..122275   	 -	821	20088995	-	MA0096	-	helicase	
97	 51.93 +1   122464..124302   	 -	612	20088996	glyS	MA0097	-	glycyl-tRNA synthetase	
98	 36.81 -1   124580..125614   	 +	344	20088997	-	MA0098	-	predicted protein	
99	 36.86 -1   125996..126307   	 +	103	20088998	-	MA0099	-	conserved hypothetical protein	
100	 42.68      126603..126923   	 +	106	20088999	-	MA0100	-	nucleotidyltransferase	

 
 44.25 MEAN 
 
 5.60  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.