IslandPath Analysis: Lactococcus lactis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.70   STD DEV: 3.50
Lactococcus lactis subsp. lactis, complete genome - 0..2365589
2267 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 37.43         358..1725     	 +	455	15671983	dnaA	L0274	L	replication initiation protein DnaA	
2	 31.93 -1     1882..3024     	 +	380	15671984	dnaN	L0275	L	DNA polymerase III, beta chain (EC 2.7.7.7)	
3	 31.91 -1     3130..6429     	 +	1099	15671985	rexB	L0252	L	subunit B of ATP-dependent exonuclease	
4	 32.34        6422..10033    	 +	1203	15671986	rexA	L0251	L	subunit A of ATP-dependent exonuclease	
5	 35.13       10280..10837    	 -	185	15671987	yabA	L10283	K	transcriptional regulator	
6	 38.35       11119..12234    	 +	371	15671988	yyaL	L0161	R	GTP-binding protein	
7	 30.86 -1    12346..12669    	 +	107	15671989	yabB	L12334	K	transcriptional regulator	
8	 40.29 +1    12924..13268    	 +	114	15671990	yabC	L12912	-	UNKNOWN PROTEIN	
9	 29.17 -1    13281..15272    	 +	663	15671991	yabD	L13272	-	UNKNOWN PROTEIN	
10	 31.92 -1    15274..15909    	 +	211	15671992	yabE	L15262	R	ABC transporter ATP-binding protein	
11	 29.72 -1    16110..16580    	 +	156	15671993	yabF	L16101	F	HYPOTHETICAL PROTEIN	
12	 37.21       16598..17164    	 +	188	15671994	pth	L0365	J	peptidyl-tRNA hydrolase (EC 3.1.1.29)	
13	 35.54       17165..20650    	 +	1161	15671995	mfd	L0263	L	transcription-repair coupling factor	
14	 32.48       20810..21280    	 +	156	15671996	yacI	L20795	-	UNKNOWN PROTEIN	
15	 31.13 -1    21351..21668    	 +	105	15671997	yacB	L1001	J	conserved hypothetical protein	
16	 31.47 -1    21697..22071    	 +	124	15671998	yacC	L21634	-	HYPOTHETICAL PROTEIN	
17	 30.25 -1    22071..22394    	 +	107	15671999	yacD	L22059	-	HYPOTHETICAL PROTEIN	
18	 33.85       22532..23881    	 +	449	15672000	yacG	L22496	-	HYPOTHETICAL PROTEIN	
19	 32.00 -1    23878..25149    	 +	423	15672001	mesJ	L1002	D	cell cycle protein MesJ	
20	 31.70 -1    25130..25681    	 +	183	15672002	hpt	L25115	F	hypoxantine-guanine phosphorybosyltransferase (EC 2.4.2.8)	
21	 40.23 +1    25887..27974    	 +	695	15672003	ftsH	L0204	O	cell division protein FtsH	
22	 31.89 -1    30922..32859    	 +	645	15672004	mtlR	L30901	K	LysR family transcriptional regulator	
23	 32.87       32907..33338    	 +	143	15672005	mtlF	L32907	G	mannitol-specific PTS system IIA component (EC 2.7.1.69)	
24	 33.59       33476..34633    	 +	385	15672006	mtlD	L33416	G	mannitol 1-phosphate 5-dehydrogenase (EC 1.1.1.17)	
25	 41.05 +1    35516..35839    	 -	107	15672007	ps101	L35519	-	prophage ps1 protein 01, hypothetical regulator	
26	 38.69       35864..36274    	 -	136	15672008	ps102	L35867	-	prophage ps1 protein 02	
27	 40.54 +1    36271..36714    	 -	147	15672009	ps103	L36274	L	prophage ps1 protein 03, terminase subunit	
28	 40.03 +1    36847..37428    	 -	193	15672010	ps104	L36850	-	prophage ps1 protein 04	
29	 40.52 +1    37664..39292    	 -	542	15672011	ps105	L37667	R	prophage ps1 protein 05, DNA primase	
30	 42.14 +1    39303..40097    	 -	264	15672012	ps106	L39306	-	prophage ps1 protein 06	
31	 40.91 +1    40101..40430    	 -	109	15672013	ps107	L40104	-	prophage ps1 protein 07	
32	 41.18 +1    40608..40862    	 -	84	15672014	ps108	L40611	-	prophage ps1 protein 08	
33	 40.00 +1    40859..41098    	 -	79	15672015	ps109	L40862	-	prophage ps1 protein 09	
34	 35.46       41141..41422    	 -	93	15672016	ps110	L41144	-	prophage ps1 protein 10	
35	 29.76 -1    41419..41670    	 -	83	15672017	ps111	L41422	K	prophage ps1 protein 11, transcriptional regulator	
36	 36.40       41667..42188    	 -	173	15672018	ps112	L41670	-	prophage ps1 protein 12	
37	 36.41       42192..42386    	 -	64	15672019	ps113	L42195	-	prophage ps1 protein 13	
38	 32.52       42462..43202    	 -	246	15672020	ps114	L42465	S	prophage ps1 protein 14	
39	 37.98       43689..44075    	 +	128	15672021	ps115	L43680	K	prophage ps1 protein 15, transcriptional regulator	
40	 39.64 +1    44085..44639    	 +	184	15672022	ps116	L44085	-	prophage ps1 protein 16	
41	 19.48 -2    44750..44980    	 +	76	15672023	ps117	L44747	-	prophage ps1 protein 17	
42	 32.82       45053..45247    	 +	64	15672024	ps118	L45035	-	prophage ps1 protein 18	
43	 29.63 -1    45399..45641    	 +	80	15672025	ps119	L45351	-	prophage ps1 protein 19	
44	 31.56 -1    45777..46001    	 +	74	15672026	ps120	L45702	-	prophage ps1 protein 20	
45	 40.74 +1    47370..47585    	 +	71	15672027	ps121	L47364	-	prophage ps1 protein 21	
46	 33.66       47988..48293    	 +	101	15672028	ps122	L47979	-	prophage ps1 protein 22	
47	 36.71       48543..49727    	 +	394	15672029	ps123	L48477	L	prophage ps1 protein 23, integrase	
48	 30.00 -1    50180..50629    	 +	149	15672030	yafE	L50174	K	HYPOTHETICAL PROTEIN	
49	 34.98       50706..50948    	 +	80	15672031	yafF	L50682	S	UNKNOWN PROTEIN	
50	 35.21       51029..52411    	 -	460	15672032	yafB	L1004	P	sulfate transporter	
51	 34.41       52656..53027    	 +	123	15672033	yafG	L52494	L	HYPOTHETICAL PROTEIN	
52	 34.36       53161..53844    	 +	227	15672034	-	L0466	L	transposase of IS1077A	
53	 38.85       53900..54661    	 -	253	15672035	tra904A	L0457	L	transposase of IS904A	
54	 37.80       54757..55047    	 -	96	15672036	yafI	L54760	L	HYPOTHETICAL PROTEIN	
55	 41.67 +1    55126..55389    	 -	87	15672037	yafJ	L55129	-	HYPOTHETICAL PROTEIN	
56	 32.38       55599..56120    	 +	173	15672038	yafC	L1005	R	HYPOTHETICAL PROTEIN	
57	 37.07       56584..57759    	 +	391	15672039	araT	L56488	E	aromatic amino acid specific aminotransferase	
58	 34.13       57858..58613    	 +	251	15672040	yafD	L1006	L	HYPOTHETICAL PROTEIN	
59	 39.25 +1    58971..60389    	 -	472	15672041	pdhD	L0036	C	lipoamide dehydrogenase component of PDH complex (EC 1.8.1.4)	
60	 40.59 +1    60583..62181    	 -	532	15672042	pdhC	L0035	C	dihydrolipoamide acetyltransferase component of PDH complex (EC 2.3.1.12)	
61	 40.98 +1    62174..63154    	 -	326	15672043	pdhB	L0034	C	PDH E1 component beta subunit (EC 1.2.4.1)	
62	 41.33 +1    63157..64281    	 -	374	15672044	pdhA	L0033	C	PDH E1 component alpha subunit (EC 1.2.4.1)	
63	 37.92       64370..65371    	 -	333	15672045	lplL	L64373	H	lipoate-protein ligase	
64	 33.92       65571..66416    	 -	281	15672046	yagA	L1007	C	conserved hypothetical protein	
65	 31.49 -1    66497..67147    	 -	216	15672047	yagB	L1008	R	conserved hypothetical protein	
66	 38.79       67264..68289    	 -	341	15672048	trpS	L0358	J	tryptophanyl-tRNA synthetase (EC 6.1.1.2)	
67	 38.81       68791..69228    	 +	145	15672049	osmC	L68759	O	osmotically inducible protein	
68	 35.54       69389..70702    	 +	437	15672050	yagE	L69353	E	amino acid permease	
69	 25.64 -2    70762..71112    	 +	116	15672051	yahC	L70747	-	UNKNOWN PROTEIN	
70	 39.86 +1    71171..72166    	 -	331	15672052	plsX	L71174	I	fatty acid/phospholipid synthesis protein	
71	 35.42       72269..73081    	 -	270	15672053	yahA	L1009	R	conserved hypothetical protein	
72	 38.16       73207..74844    	 -	545	15672054	yahG	L73210	R	ABC transporter ATP binding protein	
73	 39.89 +1    75972..77252    	 -	426	15672055	cysD	L75975	E	O-acetylhomoserine sulfhydrylase	
74	 38.97       77479..78312    	 -	277	15672056	yahI	L77482	Q	short-chain type dehydrogenase	
75	 38.03       78713..79180    	 +	155	15672057	yahB	L1010	T	conserved hypothetical protein	
76	 35.59       79537..80157    	 +	206	15672058	yahD	L79507	R	HYPOTHETICAL PROTEIN	
77	 38.72       80208..81377    	 +	389	15672059	yaiA	L80191	E	HYPOTHETICAL PROTEIN	
78	 38.41       81388..81978    	 +	196	15672060	yaiB	L81206	R	HYPOTHETICAL PROTEIN	
79	 35.75       82576..84723    	 +	715	15672061	lcnC	L82520	Q	lactococcin A ABC transporter ATP binding and permease protein	
80	 35.58       84738..86159    	 +	473	15672062	lcnD	L84721	-	lactococcin A ABC transporter permease protein	
81	 26.27 -2    86620..87072    	 +	150	15672063	yaiE	L86606	-	transporter	
82	 27.70 -2    87111..87767    	 +	218	15672064	yaiF	L87100	R	HYPOTHETICAL PROTEIN	
83	 31.91 -1    87870..88151    	 -	93	15672065	yaiI	L87874	-	UNKNOWN PROTEIN	
84	 30.14 -1    88652..88870    	 +	72	15672066	yaiG	L88635	-	HYPOTHETICAL PROTEIN	
85	 26.02 -2    89117..89827    	 +	236	15672067	yaiH	L89118	R	HYPOTHETICAL PROTEIN	
86	 26.49 -2    90253..90705    	 +	150	15672068	yajA	L90239	-	transporter	
87	 36.19       91052..91891    	 -	279	15672069	tra981A	L0432	L	transposase of IS981A	
88	 36.78       91903..92163    	 -	86	15672070	yajE	L186703	L	transposase	
89	 28.05 -2    92200..92805    	 -	201	15672071	yajF	L92204	R	HYPOTHETICAL PROTEIN	
90	 36.40       93882..94142    	 -	86	15672072	yajG	L93886	L	transposase	
91	 26.02 -2    94253..94621    	 +	122	15672073	yajB	L94197	-	UNKNOWN PROTEIN	
92	 28.71 -1    94841..95143    	 -	100	15672074	yajH	L94845	-	UNKNOWN PROTEIN	
93	 31.33 -1    95879..96028    	 -	49	15672075	rpmGB	L0096	J	50S ribosomal protein L33	
94	 44.25 +2    96058..96231    	 -	57	15672076	rpmF	L00096	J	50S ribosomal protein L32	
95	 39.45 +1    96595..98376    	 +	593	15672077	cadA	L96595	P	cadmium efflux ATPase	
96	 32.95       98429..99214    	 -	261	15672078	parA	L0210	K	chromosome partitioning protein	
97	 37.94       99269..100528   	 -	419	15672079	cshA	L99272	L	chromosome segregation helicase	
98	 35.17      100572..101060   	 -	162	15672080	ybaH	L100575	K	acetyl transferase	
99	 33.55      101212..101679   	 +	155	15672081	ybaA	L101209	-	UNKNOWN PROTEIN	
100	 37.84      101709..103262   	 +	517	15672082	ybaB	L101706	R	ABC transporter ATP binding protein	

 
 35.70 MEAN 
 
 3.50  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.