IslandPath Analysis: Listeria monocytogenes strain EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes strain EGD, complete genome - 0..2944528
2846 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.95         318..1673     	 +	451	16802049	dnaA	lmo0001	L	Chromosomal replication initiation protein DnaA	
2	 34.38 -1     1867..3012     	 +	381	16802050	dnaN	lmo0002	L	DNA polymerase III, beta chain	
3	 39.43        3121..4464     	 +	447	16802051	-	lmo0003	Q	conserved hypothetical protein	
4	 39.64        4644..4865     	 +	73	16802052	-	lmo0004	S	similar to B. subtilis YaaA protein	
5	 39.71        4869..5981     	 +	370	16802053	RecF	lmo0005	L	RecF protein	
6	 40.24        6030..7970     	 +	646	16802054	gyrB	lmo0006	L	DNA gyrase subunit B	
7	 39.90        8065..10593    	 +	842	16802055	gyrA	lmo0007	L	DNA gyrase subunit A	
8	 38.94       10728..12242    	 +	504	16802056	-	lmo0008	I	similar to cardiolipin synthase	
9	 34.10 -1    12258..12776    	 +	172	16802057	-	lmo0009	J	similar to spermidine N1-acetyltransferase	
10	 38.70       12918..13886    	 +	322	16802058	-	lmo0010	I	similar to mevalonate kinase	
11	 40.02       13843..14814    	 +	323	16802059	-	lmo0011	I	similar to mevalonate diphosphate decarboxylase	
12	 39.54       14795..15874    	 +	359	16802060	-	lmo0012	I	similar to mevalonate kinases	
13	 38.39       16219..17325    	 +	368	16802061	qoxA	lmo0013	C	AA3-600 quinol oxidase subunit II	
14	 40.71       17344..19323    	 +	659	16802062	qoxB	lmo0014	C	AA3-600 quinol oxidase subunit I	
15	 38.40       19311..19922    	 +	203	16802063	qoxC	lmo0015	C	AA3-600 quinol oxidase subunit III	
16	 37.84       19924..20256    	 +	110	16802064	qoxD	lmo0016	C	highly similar to quinol oxidase aa3-600 chain IV	
17	 35.84       20308..21426    	 -	372	16802065	-	lmo0017	M	similar to Bacillus anthracis CapA protein (polyglutamate capsule biosynthesis)	
18	 39.61       21652..23085    	 +	477	16802066	-	lmo0018	G	beta-glucosidase	
19	 38.93       23132..23953    	 -	273	16802067	-	lmo0019	-	lmo0019	
20	 31.85 -1    24194..24934    	 +	246	16802068	-	lmo0020	K	similar to transcriptional regulator (GntR family)	
21	 39.80       24950..25351    	 +	133	16802069	-	lmo0021	G	similar to PTS system, fructose-specific IIA component	
22	 37.22       25351..25839    	 +	162	16802070	-	lmo0022	G	similar to PTS system, fructose-specific IIB component	
23	 41.67 +1    25862..26665    	 +	267	16802071	-	lmo0023	G	similar to PTS system, fructose-specific IIC component	
24	 38.77       26640..27467    	 +	275	16802072	-	lmo0024	G	similar to PTS system, mannose-specific IID component	
25	 40.57       27495..28199    	 +	234	16802073	-	lmo0025	G	similar to phosphoheptose isomerase	
26	 38.63       28254..28895    	 +	213	16802074	-	lmo0026	P	similar to E. coli copper homeostasis protein CutC	
27	 38.32       29100..31004    	 +	634	16802075	-	lmo0027	G	similar to PTS system, beta-glucosides specific enzyme IIABC	
28	 36.42       31088..31963    	 +	291	16802076	-	lmo0028	S	similar to E. coli microcin C7 self-immunity protein (MccF)	
29	 40.71       32197..32535    	 +	112	16802077	-	lmo0029	-	lmo0029	
30	 36.42       32571..33380    	 -	269	16802078	-	lmo0030	R	conserved hypothetical protein	
31	 37.12       33397..34452    	 -	351	16802079	-	lmo0031	K	transcriptional regulator LacI family	
32	 41.30       34654..35619    	 +	321	16802080	-	lmo0032	K	similar to xylose repressor	
33	 40.99       35616..38018    	 +	800	16802081	-	lmo0033	-	similar to endoglucanase	
34	 38.80       38031..39383    	 +	450	16802082	-	lmo0034	G	similar to PTS system, cellobiose-specific IIC component	
35	 38.77       39385..40470    	 +	361	16802083	-	lmo0035	M	similar to Glucosamine--fructose-6-phosphate aminotransferase (C-terminal domain)	
36	 37.13       40705..41730    	 +	341	16802084	-	lmo0036	E	similar to ornithine carbamoyltransferase	
37	 37.09       41803..43188    	 +	461	16802085	-	lmo0037	E	similar to amino acid transporter	
38	 39.19       43175..44266    	 +	363	16802086	-	lmo0038	E	conserved hypothetical protein	
39	 40.98       44282..45223    	 +	313	16802087	-	lmo0039	E	similar to carbamate kinase	
40	 39.01       45325..46434    	 +	369	16802088	-	lmo0040	E	conserved hypothetical protein	
41	 33.08 -1    46451..47230    	 +	259	16802089	-	lmo0041	K	conserved hypothetical protein, hypothetical regulator	
42	 33.48 -1    47335..47994    	 +	219	16802090	-	lmo0042	S	similar to E. coli DedA protein	
43	 38.44       48074..49306    	 +	410	16802091	-	lmo0043	E	similar to arginine deiminase	
44	 35.71       49585..49878    	 +	97	16802092	rpsF	lmo0044	J	ribosomal protein S6	
45	 41.15       49934..50470    	 +	178	16802093	ssb	lmo0045	L	highly similar to single-strand binding protein (SSB)	
46	 39.58       50514..50753    	 +	79	16802094	rpsR	lmo0046	J	ribosomal protein S18	
47	 32.03 -1    50907..51518    	 +	203	16802095	-	lmo0047	S	lmo0047	
48	 35.61       51775..52389    	 +	204	16802096	-	lmo0048	-	similar to Staphylococcus two-component sensor histidine kinase AgrB	
49	 29.01 -2    52373..52534    	 +	53	16802097	-	lmo0049	-	lmo0049	
50	 32.10 -1    52630..53925    	 +	431	16802098	-	lmo0050	T	similar to sensor histidine kinase (AgrC from Staphylococcus)	
51	 35.25       53944..54672    	 +	242	16802099	-	lmo0051	K	similar to 2-components response regulator protein (AgrA from Staphylococcus)	
52	 42.50 +1    54839..56812    	 +	657	16802100	-	lmo0052	R	highly similar to B. subtilis YybT protein	
53	 35.12       56815..57261    	 +	148	16802101	rplI	lmo0053	J	50S ribosomal protein L9	
54	 42.79 +1    57286..58638    	 +	450	16802102	dnaC	lmo0054	L	highly similar to replicative DNA helicases	
55	 39.29       58897..60189    	 +	430	16802103	purA	lmo0055	F	highly similar to adenylosuccinate synthetase	
56	 38.10       60506..60799    	 +	97	16802104	-	lmo0056	-	similar to a small heat shock protein of Clostridium acetobutylicum	
57	 36.33       60948..64154    	 +	1068	16802105	-	lmo0057	S	similar to B. subtilis YueB protein	
58	 38.18       64144..64659    	 +	171	16802106	-	lmo0058	-	lmo0058	
59	 33.33 -1    64677..64928    	 +	83	16802107	-	lmo0059	-	similar to B. subtilis YukD protein	
60	 35.42       64950..66146    	 +	398	16802108	-	lmo0060	-	similar to B. subtilis YukC protein	
61	 40.00       66160..70656    	 +	1498	16802109	-	lmo0061	D	highly similar to B. subtilis YukA protein	
62	 34.60 -1    70676..71071    	 +	131	16802110	-	lmo0062	-	lmo0062	
63	 36.00       71064..71363    	 +	99	16802111	-	lmo0063	-	lmo0063	
64	 35.33       71360..72061    	 +	233	16802112	-	lmo0064	-	lmo0064	
65	 37.24       72062..72394    	 +	110	16802113	-	lmo0065	-	lmo0065	
66	 41.98 +1    72408..74222    	 +	604	16802114	-	lmo0066	-	similar to toxin components	
67	 32.53 -1    74239..75228    	 +	329	16802115	-	lmo0067	O	similar to dinitrogenase reductase ADP-ribosylation system	
68	 32.10 -1    75342..75665    	 +	107	16802116	-	lmo0068	-	lmo0068	
69	 37.07       75832..76125    	 +	97	16802117	-	lmo0069	-	lmo0069	
70	 27.39 -2    76262..76984    	 +	240	16802118	-	lmo0070	-	lmo0070	
71	 36.05       77149..77406    	 +	85	16802119	-	lmo0071	-	lmo0071	
72	 34.80       77863..78066    	 +	67	16802120	-	lmo0072	-	Hypothetical	
73	 30.18 -2    78090..78374    	 +	94	16802121	-	lmo0073	-	lmo0073	
74	 26.44 -2    78362..78811    	 +	149	16802122	-	lmo0074	-	lmo0074	
75	 46.25 +2    79047..79820    	 +	257	16802123	-	lmo0075	G	similar to carboxyphosphonoenolpyruvate phosphonomutase	
76	 41.31       79817..80869    	 +	350	16802124	-	lmo0076	F	similar to E. coli Ada protein (O6-methylguanine-DNA methyltransferase)	
77	 38.03       80892..81530    	 -	212	16802125	-	lmo0077	S	conserved hypothetical protein	
78	 44.31 +1    81661..82617    	 +	318	16802126	-	lmo0078	C	similar to phosphoglycerate dehydrogenase	
79	 37.12       82959..84437    	 +	492	16802127	-	lmo0079	-	lmo0079	
80	 32.83 -1    84451..84849    	 +	132	16802128	-	lmo0080	-	lmo0080	
81	 28.52 -2    85025..85627    	 +	200	16802129	-	lmo0081	L	lmo0081	
82	 31.80 -1    85902..86228    	 +	108	16802130	-	lmo0082	-	lmo0082	
83	 40.65       86323..86691    	 -	122	16802131	-	lmo0083	K	similar to transcription regulator (merR family)	
84	 42.28 +1    86747..87730    	 -	327	16802132	-	lmo0084	C	similar to oxidoreductases	
85	 31.16 -2    88121..88810    	 +	229	16802133	-	lmo0085	T	lmo0085	
86	 34.86       88888..94767    	 +	1959	16802134	-	lmo0086	-	lmo0086	
87	 35.50       94764..97070    	 +	768	16802135	-	lmo0087	-	lmo0087	
88	 42.39 +1    97127..97369    	 +	80	16802136	-	lmo0088	C	similar to ATP synthase C chain	
89	 34.98       97381..98412    	 +	343	16802137	-	lmo0089	C	weakly similar to ATP synthase delta chain	
90	 39.14       98409..99905    	 +	498	16802138	-	lmo0090	C	similar to ATP synthase alpha chain	
91	 38.16       99902..100771   	 +	289	16802139	-	lmo0091	C	similar to ATP synthase gamma chain	
92	 39.97      100772..102142   	 +	456	16802140	-	lmo0092	C	similar to ATP synthase beta chain	
93	 38.58      102155..102478   	 +	107	16802141	-	lmo0093	C	similar to ATP synthase epsilon chain	
94	 34.94      102468..103028   	 +	186	16802142	-	lmo0094	-	lmo0094	
95	 34.91      103204..103836   	 +	210	16802143	-	lmo0095	-	lmo0095	
96	 40.37      104134..105099   	 +	321	16802144	-	lmo0096	G	similar to PTS system mannose-specific, factor IIAB	
97	 43.00 +1   105123..105929   	 +	268	16802145	-	lmo0097	G	similar to PTS system mannose-specific, factor IIC	
98	 40.57      105951..106862   	 +	303	16802146	-	lmo0098	G	similar to PTS system mannose-specific, factor IID	
99	 38.46      106988..107377   	 +	129	16802147	-	lmo0099	-	lmo0099	
100	 35.61      107499..107849   	 +	116	16802148	-	lmo0100	-	lmo0100	

 
 38.00 MEAN 
 
 3.37  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.