IslandPath Analysis: Leptospira interrogans chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.09   STD DEV: 4.66
Leptospira interrogans serovar lai str. 56601 chromosome II, complete sequence - 0..358943
367 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.84 +1       15..2531     	 +	838	24217062	-	LB001	-	conserved hypothetical protein	
2	 38.37        2491..3423     	 +	310	24217063	metF	LB002	-	5,10-methylenetetrahydrofolate reductase	
3	 29.63 -1     3716..3823     	 -	35	24217064	-	LB004	-	hypothetical protein	
4	 32.41        3779..3886     	 +	35	24217065	-	LB003	-	hypothetical protein	
5	 37.58        4066..4890     	 -	274	24217066	-	LB005	-	conserved hypothetical protein	
6	 30.63        4975..5085     	 +	36	24217067	-	LB006	-	hypothetical protein	
7	 36.82        5239..5754     	 +	171	24217068	-	LB007	-	conserved hypothetical protein	
8	 37.32        5762..6112     	 +	116	24217069	-	LB008	-	conserved hypothetical protein	
9	 37.46        6083..6373     	 -	96	24217070	-	LB009	-	hypothetical protein	
10	 37.24        6410..7279     	 +	289	24217071	hemA	LB010	-	glutamyl-tRNA reductase	
11	 38.56        7249..8892     	 +	547	24217072	hemC	LB011	-	porphobilinogen deaminase	
12	 39.83 +1     8861..9814     	 +	317	24217073	hemB	LB012	-	porphobilinogen synthase	
13	 40.09 +1     9811..11142    	 +	443	24217074	hemL	LB013	-	glutamate-1-semialdehyde aminotransferase	
14	 35.73       11142..12059    	 +	305	24217075	-	LB014	-	two-component hybrid sensor and regulator	
15	 40.55 +1    12056..12748    	 +	230	24217076	-	LB015	-	two-component response regulator	
16	 37.04       12708..13760    	 +	350	24217077	hemE	LB016	-	uroporphyrinogen decarboxylase	
17	 38.40       13667..15106    	 +	479	24217078	hemF	LB017	-	oxygen-independent coproporphyrinogen III oxidase	
18	 39.33       15186..16169    	 +	327	24217079	-	LB018	-	conserved hypothetical protein	
19	 26.24 -1    16244..16384    	 +	46	24217080	-	LB019	-	hypothetical protein	
20	 37.93       16381..17664    	 +	427	24217081	hemG	LB020	-	protoporphyrinogen oxidase	
21	 38.52       17941..18075    	 -	44	24217082	-	LB021	-	hypothetical protein	
22	 36.59       18395..19468    	 +	357	24217083	-	LB022	-	transposase	
23	 35.02       19839..20135    	 -	98	24217084	-	LB023	-	ferrochelatase	
24	 36.65       20176..20748    	 -	190	24217085	-	LB024	-	ferrochelatase	
25	 36.83       21008..22150    	 -	380	24217086	-	LB025	-	hypothetical protein	
26	 38.13       22312..23229    	 +	305	24217087	parA3	LB026	-	ParA protein	
27	 36.30       23222..23929    	 +	235	24217088	parB3	LB027	-	ParB protein	
28	 41.13 +1    24029..24631    	 +	200	24217089	-	LB028	-	putative reductase	
29	 28.70 -1    24684..24791    	 -	35	24217090	-	LB029	-	hypothetical protein	
30	 33.25       25233..26396    	 -	387	24217091	-	LB030	-	probable intercellular adhesion protein C	
31	 39.18       26476..26817    	 -	113	24217092	-	LB032	-	hypothetical protein	
32	 38.33       26492..26851    	 +	119	24217093	-	LB031	-	cyclic nucleotide dependent protein kinase	
33	 27.62 -1    26903..27112    	 -	69	24217094	-	LB033	-	unknown protein confirmed by proteomics	
34	 39.95 +1    27247..28002    	 +	251	24217095	-	LB034	-	3-oxoacyl-(acyl carrier protein) reductase	
35	 36.96       27978..28529    	 +	183	24217096	amsI	LB035	-	low molecular weight phosphotyrosine protein phosphatase	
36	 40.90 +1    28559..29827    	 +	422	24217097	ndh	LB036	-	NADH dehydrogenase	
37	 36.82       29824..30282    	 +	152	24217098	-	LB037	-	putative sucrose/H+ symporter	
38	 36.42       30314..30475    	 -	53	24217099	-	LB038	-	hypothetical protein	
39	 32.84       30707..31315    	 -	202	24217100	-	LB039	-	hypothetical protein	
40	 29.96 -1    31361..31627    	 -	88	24217101	-	LB040	-	hypothetical protein	
41	 35.76       31683..32507    	 +	274	24217102	-	LB041	-	3-oxoacyl-(acyl carrier protein) reductase	
42	 37.59       32517..32939    	 +	140	24217103	-	LB042	-	hypothetical protein	
43	 39.78 +1    33001..33372    	 +	123	24217104	-	LB043	-	unknown protein confirmed by proteomics	
44	 33.89       33697..34767    	 +	356	24217105	-	LB044	-	hypothetical protein	
45	 34.41       35199..35384    	 -	61	24217106	-	LB045	-	hypothetical protein	
46	 31.16       35388..35525    	 -	45	24217107	-	LB046	-	hypothetical protein	
47	 37.64       36004..37326    	 +	440	24217108	-	LB047	-	conserved hypothetical protein	
48	 36.87       37916..38989    	 +	357	24217109	-	LB048	-	putative transposase	
49	 34.00       39952..40101    	 +	49	24217110	-	LB049	-	hypothetical protein	
50	 36.59       40098..40712    	 +	204	24217111	-	LB050	-	hypothetical protein	
51	 38.92       40773..41846    	 +	357	24217112	-	LB051	-	magnesium chelatase, putative	
52	 34.90       41853..42683    	 +	276	24217113	-	LB052	-	conserved hypothetical protein	
53	 33.45       42680..43549    	 +	289	24217114	-	LB053	-	hypothetical protein	
54	 36.76       43522..44484    	 +	320	24217115	vwa1	LB054	-	von Willebrand factor type A domain containing protein	
55	 35.54       44481..45524    	 +	347	24217116	vwa2	LB055	-	von Willebrand factor type A domain containing protein	
56	 35.22       45467..46210    	 +	247	24217117	-	LB056	-	TPR-repeat-containing protein	
57	 36.56       46207..47850    	 +	547	24217118	batD	LB057	-	BatD	
58	 37.12       47847..49670    	 +	607	24217119	htpG2	LB058	-	heat shock protein HtpG	
59	 35.61       49688..50257    	 +	189	24217120	-	LB059	-	hypothetical protein	
60	 32.32       50238..50729    	 -	163	24217121	-	LB060	-	hypothetical protein	
61	 40.59 +1    50959..52557    	 +	532	24217122	-	LB061	-	conserved hypothetical protein	
62	 34.78       52565..52909    	 -	114	24217123	-	LB062	-	anti-anti-sigma factor	
63	 35.78       52906..53925    	 -	339	24217124	-	LB063	-	conserved hypothetical protein	
64	 30.56       53937..54044    	 -	35	24217125	-	LB064	-	hypothetical protein	
65	 35.29       54100..54918    	 +	272	24217126	-	LB065	-	hypothetical protein	
66	 33.75       54915..55394    	 +	159	24217127	-	LB066	-	hypothetical protein	
67	 28.95 -1    55509..55622    	 +	37	24217128	-	LB067	-	hypothetical protein	
68	 37.71       55772..56593    	 +	273	24217129	-	LB068	-	fatty acid desaturase	
69	 34.53       57309..57893    	 +	194	24217130	-	LB069	-	hypothetical protein	
70	 37.94       59172..59822    	 +	216	24217131	-	LB070	-	conserved hypothetical protein	
71	 36.14       60390..60638    	 +	82	24217132	-	LB071	-	hypothetical protein	
72	 35.30       61294..61851    	 +	185	24217133	-	LB072	-	hypothetical protein	
73	 40.97 +1    61981..62949    	 -	322	24217134	-	LB073	-	lysine arginine ornithine transport system kinase	
74	 41.33 +1    62957..64969    	 -	670	24217135	mcm2	LB074	-	methylmalonyl-CoA mutase	
75	 36.19       65000..65104    	 -	34	24217136	-	LB076	-	hypothetical protein	
76	 33.33       65076..66413    	 +	445	24217137	-	LB075	-	conserved hypothetical protein	
77	 33.48       67553..68245    	 +	230	24217138	-	LB077	-	hypothetical protein	
78	 33.43       68865..69938    	 -	357	24217139	-	LB078	-	TPR-repeat-containing protein	
79	 38.35       70067..70345    	 +	92	24217140	hisE	LB079	-	phosphoribosyl-ATP pyrophosphohydrolase	
80	 31.21       70349..72280    	 +	643	24217141	-	LB080	-	conserved hypothetical protein	
81	 20.16 -2    72258..72386    	 +	42	24217142	-	LB081	-	hypothetical protein	
82	 42.22 +1    72749..73513    	 +	254	24217143	-	LB082	-	3-ketoacyl-acyl carrier protein reductase	
83	 41.88 +1    74006..74239    	 +	77	24217144	acp	LB083	-	acyl carrier protein	
84	 35.22       74293..75036    	 +	247	24217145	-	LB084	-	ribonuclease III	
85	 37.59       75411..75998    	 +	195	24217146	-	LB085	-	MutT/nudix family protein	
86	 37.02       75995..77080    	 +	361	24217147	aroB	LB086	-	3-dehydroquinate synthase	
87	 35.71       77080..77961    	 +	293	24217148	-	LB087	-	conserved hypothetical protein	
88	 29.87 -1    78288..78662    	 +	124	24217149	-	LB088	-	hypothetical protein	
89	 39.43       79179..80735    	 +	518	24217150	-	LB089	-	Uncharacterized FAD-dependent dehydrogenase	
90	 41.67 +1    80785..81324    	 +	179	24217151	-	LB090	-	conserved hypothetical protein	
91	 32.92       81632..81871    	 -	79	24217152	-	LB091	-	hypothetical protein	
92	 37.23       81925..82335    	 -	136	24217153	-	LB092	-	hypothetical protein	
93	 36.48       82392..84329    	 -	645	24217154	fadD	LB093	-	probable long-chain-fatty-acid--CoA ligase	
94	 35.58       84491..87430    	 +	979	24217155	cyaA17	LB094	-	adenylate cyclase	
95	 27.78 -1    87459..87566    	 -	35	24217156	-	LB095	-	hypothetical protein	
96	 39.44       87988..88740    	 -	250	24217157	-	LB096	-	conserved hypothetical protein	
97	 35.08       88780..90210    	 -	476	24217158	-	LB098	-	Predicted xylanase/chitin deacetilase	
98	 37.72       90205..90318    	 +	37	24217159	-	LB097	-	hypothetical protein	
99	 40.31 +1    90403..90918    	 -	171	24217160	-	LB099	-	hypothetical protein	
100	 34.59       91165..91323    	 +	52	24217161	-	LB100	-	hypothetical protein	

 
 35.09 MEAN 
 
 4.66  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.