IslandPath Analysis: Leptospira interrogans chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence - 0..4332241
4360 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 31.53         234..1565     	 +	443	24212701	dnaA	LA0001	-	chromosomal replication initiator protein	
2	 32.17        3221..4342     	 +	373	24212702	dnaN	LA0002	-	DNA polymerase III beta subunit	
3	 30.69        5004..6101     	 +	365	24212703	recF	LA0003	-	RecF protein	
4	 32.26        6098..6562     	 +	154	24212704	-	LA0004	-	conserved hypothetical protein	
5	 37.19        6626..8545     	 +	639	24212705	gyrB1	LA0005	-	DNA gyrase subunit B	
6	 36.45        8564..11068    	 +	834	24212706	gyrA1	LA0006	-	DNA gyrase subunit A	
7	 37.47       11073..12062    	 +	329	24212707	-	LA0007	-	conserved hypothetical protein	
8	 43.19 +1    12069..12413    	 +	114	24212708	-	LA0008	-	hypothetical protein	
9	 34.28       12655..13392    	 +	245	24212709	-	LA0009	-	unknown	
10	 35.33       13744..14745    	 -	333	24212710	-	LA0010	-	hypothetical protein	
11	 41.35 +1    15156..15716    	 -	186	24212711	-	LA0011	-	putative lipoprotein	
12	 33.27       15795..17402    	 +	535	24212712	-	LA0012	-	hypothetical protein	
13	 32.55       17424..18317    	 +	297	24212713	-	LA0013	-	transcriptional regulator, Fis family	
14	 31.40       18259..19347    	 -	362	24212714	-	LA0014	-	conserved hypothetical protein	
15	 25.00 -2    19556..19663    	 +	35	24212715	-	LA0015	-	hypothetical protein	
16	 40.74 +1    19919..20134    	 +	71	24212716	-	LA0016	-	hypothetical protein	
17	 31.74       20125..20688    	 -	187	24212717	-	LA0017	-	Maf-like protein	
18	 32.67       20740..21645    	 +	301	24212718	-	LA0018	-	hypothetical protein	
19	 31.55       21790..22293    	 +	167	24212719	-	LA0019	-	hypothetical protein	
20	 38.71       22298..23041    	 +	247	24212720	-	LA0020	-	3-oxoacyl-[acyl-carrier protein] reductase	
21	 32.51       23057..23665    	 +	202	24212721	-	LA0021	-	predicted translation factor SUA5	
22	 40.29 +1    24156..25838    	 +	560	24212722	-	LA0022	-	conserved hypothetical protein	
23	 32.18       26414..26587    	 -	57	24212723	-	LA0023	-	hypothetical protein	
24	 31.40       26668..27030    	 -	120	24212724	-	LA0024	-	conserved hypothetical protein	
25	 36.51       27957..28082    	 -	41	24212725	-	LA0026	-	hypothetical protein	
26	 40.53 +1    28064..29077    	 +	337	24212726	fliG1	LA0025	-	flagellar motor switch protein FliG	
27	 30.39       29142..31418    	 +	758	24212727	cyaA1	LA0027	-	adenylate cyclase	
28	 19.88 -2    31868..32038    	 +	56	24212728	-	LA0028	-	hypothetical protein	
29	 29.93 -1    32041..32598    	 +	185	24212729	-	LA0029	-	hypothetical protein	
30	 30.40       32546..33772    	 +	408	24212730	-	LA0030	-	unknown protein	
31	 40.57 +1    33997..34701    	 +	234	24212731	-	LA0031	-	unknown protein	
32	 36.67       34705..35064    	 +	119	24212732	-	LA0032	-	hypothetical protein	
33	 40.16 +1    35061..35909    	 -	282	24212733	suhB1	LA0033	-	inositol monophophatase family protein	
34	 33.22       35929..36840    	 -	303	24212734	-	LA0034	-	hypothetical protein	
35	 35.76       37450..39426    	 -	658	24212735	-	LA0035	-	beta-galactosidase I	
36	 33.90       39454..39630    	 -	58	24212736	-	LA0037	-	hypothetical protein	
37	 35.78       39612..40469    	 +	285	24212737	-	LA0036	-	Heat shock protein HSP33	
38	 29.67 -1    40477..41049    	 +	190	24212738	-	LA0038	-	conserved hypothetical protein	
39	 34.20       41031..41726    	 +	231	24212739	-	LA0039	-	conserved hypothetical protein	
40	 32.75       41732..43978    	 +	748	24212740	-	LA0040	-	VacB protein	
41	 34.11       44138..44650    	 +	170	24212741	-	LA0041	-	hypothetical protein	
42	 39.16       44654..46267    	 +	537	24212742	-	LA0042	-	GMC oxidoreductase	
43	 32.67       46409..47917    	 +	502	24212743	-	LA0043	-	TPR-repeat-containing proteins	
44	 25.69 -1    47932..48075    	 +	47	24212744	-	LA0044	-	hypothetical protein	
45	 30.35       48128..48832    	 -	234	24212745	aroD	LA0045	-	3-dehydroquinate dehydratase	
46	 35.91       48836..49804    	 -	322	24212746	kpsF	LA0046	-	Polysialic acid capsule expression protein kpsF	
47	 34.07       49788..50327    	 -	179	24212747	nusG	LA0047	-	transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin	
48	 30.83       50311..50790    	 -	159	24212748	-	LA0048	-	hypothetical protein	
49	 35.81       51872..53569    	 +	565	24212749	aer	LA0049	-	aerotaxis sensor receptor, flavoprotein	
50	 37.43       54175..55053    	 +	292	24212750	-	LA0050	-	conserved hypothetical protein	
51	 37.91       55050..55988    	 +	312	24212751	-	LA0051	-	dTDPglucose 4,6-dehydratase	
52	 39.83       56062..57231    	 +	389	24212752	pntA	LA0052	-	NAD(P) transhydrogenase subunit alpha	
53	 39.29       57190..57726    	 -	178	24212753	-	LA0053	-	predicted phosphatase	
54	 36.29       57723..59042    	 -	439	24212754	hisS1	LA0054	-	histidyl-tRNA synthetase	
55	 35.68       59049..60197    	 -	382	24212755	-	LA0055	-	unknown protein	
56	 36.09       60207..62270    	 -	687	24212756	-	LA0056	-	outer membrane protein OmpA family	
57	 32.62       62364..63206    	 +	280	24212757	folP	LA0057	-	dihydropteroate synthase	
58	 28.99 -1    63644..63781    	 -	45	24212758	-	LA0058	-	hypothetical protein	
59	 30.14 -1    63975..65225    	 -	416	24212759	-	LA0059	-	TPR-repeat-containing protein	
60	 34.11       65283..66185    	 -	300	24212760	-	LA0060	-	TPR-repeat-containing protein	
61	 36.54       66235..67200    	 +	321	24212761	-	LA0061	-	conserved hypothetical protein	
62	 39.97 +1    67903..68610    	 -	235	24212762	cysE1	LA0062	-	Serine acetyltransferase	
63	 36.25       68812..69738    	 +	308	24212763	-	LA0063	-	conserved hypothetical protein	
64	 35.45       69702..71117    	 +	471	24212764	-	LA0064	-	conserved hypothetical protein	
65	 31.60       71912..73294    	 -	460	24212765	dinF	LA0065	-	DNA-damage-inducible protein F	
66	 36.53       73311..74594    	 -	427	24212766	gltT	LA0066	-	Proton/sodium-glutamate symport protein	
67	 34.68       74734..77919    	 +	1061	24212767	-	LA0067	-	conserved hypothetical protein	
68	 34.79       77912..78802    	 +	296	24212768	-	LA0068	-	hypothetical protein	
69	 28.07 -1    79400..79627    	 +	75	24212769	-	LA0069	-	hypothetical protein	
70	 33.52       79673..82879    	 +	1068	24212770	-	LA0070	-	conserved hypothetical protein	
71	 39.34       83593..84075    	 -	160	24212771	-	LA0071	-	unknown protein	
72	 35.06       84139..84660    	 -	173	24212772	-	LA0072	-	probable dCTP deaminase  dcd	
73	 37.93       84661..85443    	 -	260	24212773	ech1	LA0073	-	enoyl-CoA hydratase	
74	 36.10       85476..86270    	 +	264	24212774	-	LA0074	-	hypothetical protein	
75	 41.67 +1    87157..87384    	 +	75	24212775	-	LA0075	-	hypothetical protein	
76	 33.58       87472..87870    	 -	132	24212776	-	LA0076	-	Glyoxalase/Bleomycin resistance protein/Dioxygenase family protein	
77	 31.22       87950..89038    	 -	362	24212777	-	LA0077	-	conserved hypothetical protein	
78	 35.79       89035..90540    	 -	501	24212778	-	LA0078	-	conserved hypothetical protein	
79	 31.67       90575..90694    	 -	39	24212779	-	LA0079	-	hypothetical protein	
80	 32.54       90672..90797    	 -	41	24212780	-	LA0081	-	hypothetical protein	
81	 31.47       90769..91518    	 +	249	24212781	-	LA0080	-	putative haloacid dehalogenase-like hydrolase	
82	 34.98       91507..92358    	 -	283	24212782	-	LA0082	-	S-adenosylmethionine-dependent methyltransferase	
83	 39.83       92497..93342    	 +	281	24212783	dapF	LA0083	-	diaminopimelate epimerase	
84	 36.29       93349..94059    	 -	236	24212784	-	LA0084	-	putative acyltransferase	
85	 41.75 +1    94092..94376    	 -	94	24212785	-	LA0085	-	unknown protein	
86	 39.64       94349..94459    	 -	36	24212786	-	LA0086	-	hypothetical protein	
87	 36.87       95097..96170    	 +	357	24212787	-	LA0087	-	transposase	
88	 41.06 +1    96152..96397    	 -	81	24212788	-	LA0088	-	unknown protein	
89	 31.03       96819..96992    	 -	57	24212789	-	LA0090	-	hypothetical protein	
90	 28.74 -1    96862..97035    	 +	57	24212790	-	LA0089	-	unknown protein	
91	 33.91       97163..97510    	 +	115	24212791	-	LA0091	-	conserved hypothetical protein	
92	 32.29       97514..98089    	 -	191	24212792	-	LA0092	-	Sensory transduction histidine kinases	
93	 40.45 +1    98281..98814    	 -	177	24212793	-	LA0093	-	conserved hypothetical protein	
94	 27.62 -1    99185..100006   	 -	273	24212794	-	LA0094	-	hypothetical protein	
95	 35.20      100722..101042   	 -	106	24212795	-	LA0095	-	hypothetical protein	
96	 35.12      101086..101532   	 -	148	24212796	-	LA0097	-	hypothetical protein	
97	 42.98 +1   101513..101626   	 +	37	24212797	-	LA0096	-	hypothetical protein	
98	 33.09      101861..103108   	 +	415	24212798	-	LA0098	-	RNA methyltransferase	
99	 30.33      103386..104051   	 +	221	24212799	-	LA0099	-	hypothetical protein	
100	 38.49      104945..106225   	 +	426	24212800	-	LA0100	-	putative outermembrane protein	

 
 35.02 MEAN 
 
 4.84  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.