IslandPath Analysis: Lactobacillus plantarum WCFS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.06   STD DEV: 4.00
Lactobacillus plantarum WCFS1, complete genome - 0..3308274
3009 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 44.52           1..1368     	 +	455	28376975	dnaA	lp_0001	-	chromosomal replication initiation protein DnaA	
2	 42.54        1546..2685     	 +	379	28376976	dnaN	lp_0002	-	DNA-directed DNA polymerase III, beta chain	
3	 42.74        3210..3443     	 +	77	28376977	-	lp_0004	-	unknown	
4	 45.24        3444..4568     	 +	374	28376978	recF	lp_0005	-	DNA repair and genetic recombination protein RecF	
5	 45.92        4565..6511     	 +	648	28376979	gyrB	lp_0006	-	DNA gyrase, B subunit	
6	 46.29        6676..9237     	 +	853	28376980	gyrA	lp_0007	-	DNA gyrase, A subunit	
7	 39.67 -1     9860..10159    	 +	99	28376981	rpsF	lp_0009	-	ribosomal protein S6	
8	 41.96       10196..10798    	 +	200	28376982	ssb	lp_0010	-	single-strand binding protein	
9	 44.30       10837..11073    	 +	78	28376983	rpsR	lp_0011	-	ribosomal protein S18	
10	 44.36       11254..13266    	 +	670	28376984	-	lp_0012	-	exopolyphosphatase-related protein (putative)	
11	 44.59       13279..13731    	 +	150	28376985	rplI	lp_0013	-	ribosomal protein L9	
12	 47.72       13747..15171    	 +	474	28376986	dnaC	lp_0014	-	replicative DNA helicase DnaC	
13	 44.04       15393..16616    	 +	407	28376987	-	lp_0015	-	transport protein	
14	 43.62       16629..17435    	 +	268	28376988	proB	lp_0016	-	glutamate 5-kinase	
15	 48.91       17454..18692    	 +	412	28376989	proA	lp_0017	-	glutamate-5-semialdehyde dehydrogenase	
16	 44.84       19153..20769    	 +	538	28376990	-	lp_0018	-	lipoprotein precursor, peptide binding protein OppA homolog	
17	 38.10 -1    20774..21025    	 -	83	28376991	-	lp_0019	-	unknown	
18	 47.72       21099..23003    	 +	634	28376992	glgB	lp_0020	-	1,4-alpha-glucan branching enzyme	
19	 45.00       22993..24132    	 +	379	28376993	glgC	lp_0021	-	glucose-1-phosphate adenylyltransferase, subunit	
20	 46.72       24129..25301    	 +	390	28376994	glgD	lp_0022	-	glucose-1-phosphate adenylyltransferase, subunit	
21	 47.99       25294..26733    	 +	479	28376995	glgA	lp_0023	-	starch (bacterial glycogen) synthase	
22	 47.98       26753..29149    	 +	798	28376996	glgP	lp_0024	-	glycogen phosphorylase	
23	 49.17 +1    29167..30984    	 +	605	28376997	amy1	lp_0025	-	alpha-amylase	
24	 47.53       31317..32084    	 +	255	28376998	-	lp_0026	-	hydrolase, HAD superfamily, Cof family	
25	 48.81       32236..32907    	 -	223	28376999	pgmB1	lp_0027	-	beta-phosphoglucomutase	
26	 46.82       32925..35645    	 -	906	28377000	map1	lp_0028	-	maltose phosphorylase	
27	 47.11       36033..36482    	 -	149	28377001	-	lp_0030	-	unknown	
28	 40.80 -1    36680..36880    	 +	66	28377002	cspL	lp_0031	-	cold shock protein CspL	
29	 45.30       36963..37196    	 +	77	28377003	-	lp_0032	-	unknown	
30	 45.76       37770..38477    	 +	235	28377004	rrp1	lp_0036	-	response regulator	
31	 43.20       38491..40365    	 +	624	28377005	hpk1	lp_0037	-	histidine protein kinase; sensor protein	
32	 42.31       40346..41671    	 +	441	28377006	-	lp_0038	-	unknown	
33	 45.03       41683..42537    	 +	284	28377007	-	lp_0039	-	unknown	
34	 44.12       42895..43710    	 +	271	28377008	-	lp_0041	-	hydrolase	
35	 45.05       43821..45083    	 +	420	28377009	htrA	lp_0043	-	serine protease HtrA	
36	 43.33       45638..46117    	 +	159	28377010	-	lp_0045	-	unknown	
37	 33.85 -2    46600..47175    	 +	191	28377011	-	lp_0046	-	transcription regulator	
38	 41.23       47239..48669    	 +	476	28377012	aldH	lp_0047	-	aldehyde dehydrogenase	
39	 45.50       48877..49509    	 +	210	28377013	-	lp_0048	-	unknown	
40	 47.31       49758..50408    	 +	216	28377014	pnb	lp_0050	-	p-nitrobenzoate reductase	
41	 41.46       50524..50892    	 +	122	28377015	-	lp_0052	-	unknown	
42	 43.72       50960..51787    	 -	275	28377016	-	lp_0053	-	unknown	
43	 40.29 -1    51804..52637    	 -	277	28377017	-	lp_0054	-	unknown	
44	 45.91       52791..55160    	 -	789	28377018	-	lp_0055	-	fumarate reductase, flavoprotein subunit precursor	
45	 42.87       55625..57040    	 +	471	28377019	-	lp_0056	-	cation transport protein	
46	 47.35       57132..58037    	 +	301	28377020	-	lp_0057	-	transcription regulator	
47	 45.31       58107..58532    	 -	141	28377021	-	lp_0058	-	unknown	
48	 50.23 +1    58868..59293    	 +	141	28377022	arsC	lp_0059	-	arsenate reductase	
49	 46.69       59613..60473    	 +	286	28377023	-	lp_0060	-	short-chain dehydrogenase/oxidoreductase	
50	 46.34       60505..61350    	 +	281	28377024	-	lp_0061	-	acetoacetate decarboxylase (putative)	
51	 46.02       61378..62031    	 +	217	28377025	-	lp_0062	-	nitroreductase	
52	 45.96       62200..63735    	 +	511	28377026	-	lp_0063	-	unknown	
53	 46.40       63662..63883    	 -	73	28377027	-	lp_0064	-	unknown	
54	 44.94       64066..64737    	 +	223	28377028	pgmB2	lp_0066	-	beta-phosphoglucomutase	
55	 47.10       64823..65839    	 -	338	28377029	bsh2	lp_0067	-	choloylglycine hydrolase	
56	 45.68       66113..67456    	 +	447	28377030	-	lp_0068	-	integral membrane protein	
57	 45.92       67605..68351    	 +	248	28377031	ptp1	lp_0069	-	protein-tyrosine phosphatase	
58	 47.04       68424..69671    	 -	415	28377032	-	lp_0070	-	4-hydroxyphenylacetate-3-hydroxylase	
59	 44.74       69747..69860    	 -	37	28377033	-	lp_0071	-	unknown	
60	 45.51       69943..70443    	 -	166	28377034	-	lp_0072	-	unknown	
61	 49.33 +1    70536..71204    	 +	222	28377035	-	lp_0073	-	unknown	
62	 40.65 -1    71292..72248    	 -	318	28377036	-	lp_0074	-	unknown	
63	 42.75       72330..72977    	 +	215	28377037	-	lp_0075	-	acyl carrier protein phosphodiesterase (putative)	
64	 49.58 +1    73239..75257    	 +	672	28377038	fusA1	lp_0076	-	elongation factor G	
65	 47.60       75275..75961    	 +	228	28377039	-	lp_0077	-	unknown	
66	 46.89       75967..76851    	 +	294	28377040	-	lp_0078	-	transport protein	
67	 46.34       77039..77530    	 +	163	28377041	-	lp_0080	-	acetyltransferase (GNAT) family (putative)	
68	 47.85       77561..78235    	 -	224	28377042	-	lp_0081	-	intracellular protease/amidase (putative)	
69	 45.67       78281..79285    	 -	334	28377043	-	lp_0082	-	oxidoreductase	
70	 44.66       79467..79775    	 +	102	28377044	-	lp_0083	-	transcription regulator	
71	 45.39       79946..81280    	 -	444	28377045	-	lp_0085	-	cation efflux protein (putative)	
72	 47.91       82631..83515    	 +	294	28377046	pepI	lp_0088	-	prolyl aminopeptidase	
73	 45.78       83697..84443    	 -	248	28377047	-	lp_0089	-	unknown	
74	 39.77 -1    84613..85047    	 +	144	28377048	-	lp_0091	-	unknown	
75	 44.77       85149..86792    	 -	547	28377049	-	lp_0092	-	extracellular protein, peptide binding protein OppA homolog	
76	 46.67       87460..88209    	 +	249	28377050	-	lp_0096	-	unknown	
77	 46.15       88467..89246    	 +	259	28377051	-	lp_0098	-	adenylyl transferase (putative)	
78	 39.32 -1    89314..89547    	 -	77	28377052	-	lp_0099	-	unknown	
79	 47.68       89568..90299    	 -	243	28377053	-	lp_0100	-	cobalt ABC transporter, ATP-binding protein (putative)	
80	 46.59       90301..91122    	 -	273	28377054	-	lp_0101	-	cobalt transport protein	
81	 51.00 +1    91097..92098    	 -	333	28377055	cbiM	lp_0102	-	cobalamin biosynthesis protein	
82	 40.69 -1    92098..92763    	 -	221	28377056	-	lp_0103	-	transcription regulator	
83	 44.86       93016..94290    	 +	424	28377057	-	lp_0104	-	unknown	
84	 52.90 +1    94292..95032    	 +	246	28377058	-	lp_0105	-	NCAIR mutase, PurE-related protein	
85	 44.07       96329..97045    	 +	238	28377059	glpF1	lp_0108	-	glycerol uptake facilitator protein	
86	 46.33       97070..97900    	 +	276	28377060	-	lp_0109	-	unknown	
87	 52.25 +1    98100..99077    	 -	325	28377061	-	lp_0111	-	oxidoreductase	
88	 49.12 +1    99433..100224   	 +	263	28377062	thiM	lp_0113	-	hydroxyethylthiazole kinase	
89	 51.52 +1   100250..101074   	 +	274	28377063	thiD	lp_0114	-	phosphomethylpyrimidine kinase	
90	 52.45 +1   101064..101717   	 +	217	28377064	thiE	lp_0115	-	thiamine-phosphate pyrophosphorylase	
91	 49.08 +1   101717..102916   	 +	399	28377065	-	lp_0116	-	purine-cytosine transport protein	
92	 51.28 +1   102998..103738   	 +	246	28377066	-	lp_0117	-	unknown	
93	 49.22 +1   103981..105573   	 +	530	28377067	-	lp_0118	-	unknown	
94	 45.01      105689..106159   	 -	156	28377068	-	lp_0119	-	NTP pyrophosphohydrolase	
95	 44.32      106392..107756   	 +	454	28377069	-	lp_0120	-	amino acid transport protein	
96	 46.54      107784..108563   	 +	259	28377070	-	lp_0121	-	unknown	
97	 50.06 +1   108588..109370   	 +	260	28377071	hpo	lp_0122	-	halo peroxidase	
98	 49.32 +1   109566..112304   	 -	912	28377072	pacL1	lp_0124	-	cation transporting P-type ATPase	
99	 46.25      112589..113347   	 +	252	28377073	-	lp_0125	-	purine nucleoside phosphorylase (putative)	
100	 43.08      113390..113584   	 -	64	28377074	-	lp_0126	-	stress-responsive transcription regulator (putative)	

 
 45.06 MEAN 
 
 4.00  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.