IslandPath Analysis: Helicobacter pylori J99



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.57   STD DEV: 3.53
Helicobacter pylori, strain J99 complete genome - 0..1643831
1491 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.01          51..467      	 -	138	15611072	nusB	jhp0001	K	TRANSCRIPTION TERMINATION	
2	 44.80 +1      469..939      	 -	156	15611073	ribE	jhp0002	H	RIBOFLAVIN SYNTHASE BETA CHAIN	
3	 42.72         949..1779     	 -	276	15611074	kdsA	jhp0003	M	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase	
4	 39.19        1766..2431     	 -	221	15611075	icfA	jhp0004	P	Carbonic anhydrase	
5	 39.91        2552..3235     	 +	227	15611076	pyrF	jhp0005	F	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	
6	 43.44 +1     3235..4065     	 +	276	15611077	panC	jhp0006	H	PANTOATE--BETA-ALANINE LIGASE	
7	 43.25 +1     5436..7443     	 -	668	15611078	jhp0007	jhp0007	-	putative Outer membrane protein	
8	 45.83 +1     7758..9398     	 -	546	15611079	groEL	jhp0008	O	60kDa chaperone	
9	 40.90        9423..9779     	 -	118	15611080	groES	jhp0009	O	10kDa chaperone	
10	 39.29       10067..11746    	 +	559	15611081	dnaG	jhp0010	L	DNA PRIMASE	
11	 40.93       11743..12795    	 +	350	15611082	jhp0011	jhp0011	J	putative	
12	 38.53       12885..13712    	 +	275	15611083	jhp0012	jhp0012	-	putative	
13	 39.36       13859..14140    	 +	93	15611084	jhp0013	jhp0013	-	putative	
14	 32.95 -1    14140..14403    	 +	87	15611085	jhp0014	jhp0014	-	putative	
15	 37.35       14405..16768    	 +	787	15611086	virB4_1	jhp0015	N	DNA transfer protein	
16	 40.00       17008..18417    	 +	469	15611087	jhp0016	jhp0016	S	putative	
17	 41.20       18524..19489    	 +	321	15611088	cheV_1	jhp0017	N	putative chemotaxis protein	
18	 43.84 +1    19486..20703    	 +	405	15611089	nspC	jhp0018	E	putative carboxynorspermidine decarboxylase	
19	 44.10 +1    20764..21339    	 -	191	15611090	jhp0019	jhp0019	I	putative	
20	 40.46       21350..22921    	 -	523	15611091	jhp0020	jhp0020	R	putative	
21	 45.01 +1    23538..25610    	 -	690	15611092	jhp0021	jhp0021	-	putative Outer membrane protein	
22	 44.57 +1    26315..27595    	 -	426	15611093	gltA	jhp0022	C	CITRATE SYNTHASE	
23	 43.74 +1    27796..29073    	 +	425	15611094	icd	jhp0023	C	ISOCITRATE DEHYDROGENASE	
24	 38.26       29138..29665    	 +	175	15611095	jhp0024	jhp0024	-	putative	
25	 38.81       29642..30298    	 -	218	15611096	bioD	jhp0025	H	DETHIOBIOTIN SYNTHETASE	
26	 35.57 -1    30302..31999    	 -	565	15611097	jhp0026	jhp0026	-	putative	
27	 38.65       32111..32524    	 +	137	15611098	jhp0027	jhp0027	-	putative	
28	 41.39       32526..32798    	 +	90	15611099	jhp0028	jhp0028	S	putative	
29	 39.66       32798..35026    	 +	742	15611100	clpA	jhp0029	O	ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT	
30	 41.81       35016..35369    	 +	117	15611101	panD	jhp0030	H	ASPARTATE 1-DECARBOXYLASE	
31	 41.91       35372..35674    	 +	100	15611102	jhp0031	jhp0031	S	putative	
32	 40.38       35671..36678    	 +	335	15611103	jhp0032	jhp0032	-	putative	
33	 39.49       36686..37741    	 +	351	15611104	jhp0033	jhp0033	N	putative	
34	 41.94       37867..38610    	 +	247	15611105	comB1	jhp0034	N	DNA transformation competancy	
35	 35.87 -1    38610..39596    	 +	328	15611106	comB2	jhp0035	N	DNA transformation compentancy	
36	 42.44       39589..40719    	 +	376	15611107	comB3	jhp0036	N	DNA transformation compentancy	
37	 38.92       40789..42201    	 +	470	15611108	manC	jhp0037	M	phosphomannose isomerase/GDP-mannose pyrophosphorylase	
38	 42.15       42242..43387    	 +	381	15611109	gmd	jhp0038	M	GDP-D-mannose dehydratase	
39	 40.73       43380..44312    	 +	310	15611110	jhp0039	jhp0039	M	putative SUGAR NUCLEOTIDE BIOSYNTHESIS	
40	 42.94       45190..46188    	 -	332	15611111	hypE	jhp0040	O	HYDROGENASE EXPRESSION/FORMATION PROTEIN	
41	 41.82       46191..48464    	 -	757	15611112	jhp0041	jhp0041	O	putative TRANSCRIPTIONAL REGULATOR	
42	 40.48       48440..49432    	 -	330	15611113	jhp0042	jhp0042	E	putative	
43	 39.68       49491..50183    	 -	230	15611114	jhp0043	jhp0043	L	putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)	
44	 38.17       50161..50718    	 -	185	15611115	jhp0044	jhp0044	-	putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)	
45	 32.56 -1    51152..52183    	 -	343	15611116	jhp0045	jhp0045	L	putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)	
46	 31.67 -2    52193..52975    	 -	260	15611117	jhp0046	jhp0046	-	putative TYPE II restriction enzyme	
47	 42.32       53403..54893    	 -	496	15611118	putP	jhp0047	E	sodium/proline symporter	
48	 40.56       54920..58477    	 -	1185	15611119	putA	jhp0048	C	Proline/pyrroline-5-carboxylate dehydrogenase	
49	 39.05       58798..59007    	 +	69	15611120	jhp0049	jhp0049	-	putative	
50	 33.48 -1    59335..59997    	 +	220	15611121	jhp0050	jhp0050	-	putative	
51	 35.81 -1    60127..60489    	 +	120	15611122	jhp0051	jhp0051	-	putative	
52	 40.24       60490..61473    	 +	327	15611123	jhp0052	jhp0052	-	putative	
53	 37.73       61484..61915    	 +	143	15611124	jhp0053	jhp0053	-	putative	
54	 39.90       62096..63664    	 +	522	15611125	jhp0054	jhp0054	-	putative	
55	 41.77       63665..63901    	 +	78	15611126	jhp0055	jhp0055	-	putative	
56	 40.00       63898..64467    	 +	189	15611127	jhp0056	jhp0056	-	putative	
57	 40.23       64483..64743    	 +	86	15611128	jhp0057	jhp0057	-	putative	
58	 39.25       64754..66256    	 +	500	15611129	jhp0058	jhp0058	-	putative	
59	 35.95 -1    66226..66645    	 +	139	15611130	jhp0059	jhp0059	-	putative	
60	 40.68       66647..67000    	 +	117	15611131	jhp0060	jhp0060	-	putative	
61	 40.07       66993..69413    	 +	806	15611132	jhp0061	jhp0061	D	putative	
62	 43.73 +1    69487..70284    	 -	265	15611133	ureH	jhp0062	O	UREASE ACCESSORY PROTEIN	
63	 44.33 +1    70284..70883    	 -	199	15611134	ureG	jhp0063	O	UREASE ACCESSORY PROTEIN	
64	 41.37       70912..71682    	 -	256	15611135	ureF	jhp0064	O	UREASE ACCESSORY PROTEIN	
65	 40.74       71706..72218    	 -	170	15611136	ureE	jhp0065	O	UREASE ACCESSORY PROTEIN	
66	 44.05 +1    72220..72807    	 -	195	15611137	ureI	jhp0066	-	urea transporter	
67	 44.91 +1    73031..74740    	 -	569	15611138	ureB	jhp0067	E	UREASE BETA SUBUNIT	
68	 42.26       74744..75460    	 -	238	15611139	ureA	jhp0068	E	UREASE ALPHA SUBUNIT	
69	 36.38       75814..76305    	 -	163	15611140	lspA	jhp0069	N	LIPOPROTEIN SIGNAL PEPTIDASE	
70	 42.38       76299..77636    	 -	445	15611141	glmM	jhp0070	G	phosphoglucosamine mutase	
71	 39.63       77726..77995    	 +	89	15611142	rpsT	jhp0071	J	30S RIBOSOMAL PROTEIN S20	
72	 43.06       78114..79172    	 +	352	15611143	prfA	jhp0072	J	PEPTIDE CHAIN RELEASE FACTOR 1	
73	 42.71       79586..80353    	 +	255	15611144	jhp0073	jhp0073	-	putative Outer membrane protein	
74	 42.75       80604..82376    	 +	590	15611145	jhp0074	jhp0074	-	putative	
75	 38.72       82800..84821    	 -	673	15611146	jhp0075	jhp0075	N	methyl-accepting chemotaxis protein (MCP)	
76	 42.31       84971..85360    	 -	129	15611147	rpsI	jhp0076	J	30S RIBOSOMAL PROTEIN S9	
77	 41.55       85357..85782    	 -	141	15611148	rplM	jhp0077	J	50S RIBOSOMAL PROTEIN L13	
78	 35.45 -1    86134..86322    	 -	62	15611149	jhp0078	jhp0078	-	putative	
79	 41.02       86329..87681    	 -	450	15611150	jhp0079	jhp0079	R	putative	
80	 40.90       87735..89108    	 -	457	15611151	jhp0080	jhp0080	M	putative	
81	 39.98       89128..91173    	 -	681	15611152	rpoD	jhp0081	K	RNA POLYMERASE SIGMA FACTOR (SIGMA-70)	
82	 42.42       91396..92088    	 -	230	15611153	jhp0082	jhp0082	F	putative	
83	 43.12 +1    92102..93031    	 -	309	15611154	fabD	jhp0083	I	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE	
84	 39.45       94286..95119    	 +	277	15611155	jhp0085	jhp0085	L	TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)	
85	 40.89       95139..96039    	 -	299	15611156	jhp0086	jhp0086	-	putative ALPHA(1,2)FUCOSYLTRANSFERASE	
86	 37.48       96135..96665    	 -	176	15611157	jhp0087	jhp0087	-	putative	
87	 39.47       96738..97682    	 +	314	15611158	jhp0088	jhp0088	C	putative keto-acid dehydrogenase	
88	 40.76       97806..98519    	 -	237	15611159	jhp0089	jhp0089	-	putative	
89	 41.20       98623..100083   	 -	486	15611160	thrC	jhp0090	E	THREONINE SYNTHASE	
90	 40.24      100277..102304   	 +	675	15611161	jhp0091	jhp0091	N	methyl-accepting chemotaxis protein (MCP)	
91	 38.93      102304..103410   	 +	368	15611162	jhp0092	jhp0092	S	putative	
92	 35.96 -1   103627..104388   	 +	253	15611163	jhp0093	jhp0093	-	putative	
93	 37.93      104371..105153   	 -	260	15611164	jhp0094	jhp0094	M	putative	
94	 41.65      105185..106879   	 -	564	15611165	jhp0095	jhp0095	N	methyl-accepting chemotaxis protein (MCP)	
95	 40.84      107095..108840   	 -	581	15611166	cpdB	jhp0096	F	2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE	
96	 44.88 +1   108981..109439   	 -	152	15611167	jhp0097	jhp0097	T	putative	
97	 47.86 +2   109477..110619   	 -	380	15611168	metB	jhp0098	E	putative CYSTATHIONINE GAMMA-SYNTHASE	
98	 46.19 +1   110644..111561   	 -	305	15611169	cysK	jhp0099	E	CYSTEINE SYNTHASE	
99	 40.74      111680..112138   	 +	152	15611170	jhp0100	jhp0100	-	putative	
100	 43.26 +1   112512..114374   	 -	620	15611171	dnaK	jhp0101	O	70kDa chaperone	

 
 39.57 MEAN 
 
 3.53  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.