IslandPath Analysis: Helicobacter pylori 26695



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.13   STD DEV: 3.75
Helicobacter pylori 26695 complete genome - 0..1667867
1576 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.01         217..633      	 -	138	15644635	-	HP0001	K	hypothetical protein	
2	 45.65 +1      635..1105     	 -	156	15644636	-	HP0002	H	riboflavin synthase beta chain (ribE)	
3	 42.84        1115..1945     	 -	276	15644637	-	HP0003	M	3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase (kdsA)	
4	 40.09        1932..2597     	 -	221	15644638	-	HP0004	P	carbonic anhydrase (icfA)	
5	 39.91        2719..3402     	 +	227	15644639	-	HP0005	F	orotidine 5'-phosphate decarboxylase (pyrF)	
6	 41.03        3403..4233     	 +	276	15644640	-	HP0006	H	pantoate-beta-alanine ligase (panC)	
7	 48.61 +2     4697..4768     	 +	23	15644641	-	HP0007	-	hypothetical protein	
8	 23.81 -2     4937..5020     	 +	27	15644642	-	HP0008	-	hypothetical protein	
9	 42.52        5241..7145     	 -	634	15646197	omp1	HP0009	-	outer membrane protein	
10	 45.28 +1     7603..9243     	 -	546	15644643	-	HP0010	O	chaperone and heat shock protein (groEL)	
11	 41.74        9268..9624     	 -	118	15644644	-	HP0011	O	co-chaperone (groES)	
12	 40.18        9911..11590    	 +	559	15644645	-	HP0012	L	DNA primase (dnaG)	
13	 40.55       11587..12639    	 +	350	15644646	-	HP0013	J	hypothetical protein	
14	 38.89       12728..13555    	 +	275	15644647	-	HP0014	-	hypothetical protein	
15	 39.72       13702..13983    	 +	93	15644648	-	HP0015	-	hypothetical protein	
16	 35.23 -1    13983..14246    	 +	87	15644649	-	HP0016	-	hypothetical protein	
17	 37.69       14248..16611    	 +	787	15644650	-	HP0017	N	virB4 homolog (virB4)	
18	 40.00       16863..18272    	 +	469	15644651	-	HP0018	S	hypothetical protein	
19	 40.37       18380..19345    	 +	321	15644652	-	HP0019	T	chemotaxis protein (cheV)	
20	 42.78       19342..20559    	 +	405	15644653	-	HP0020	E	carboxynorspermidine decarboxylase (nspC)	
21	 44.68 +1    20569..21141    	 -	190	15644654	-	HP0021	I	hypothetical protein	
22	 39.97       21152..22717    	 -	521	15644655	-	HP0022	R	conserved hypothetical integral membrane protein	
23	 37.50       22773..22892    	 +	39	15644656	-	HP0023	-	hypothetical protein	
24	 32.26 -1    22903..22995    	 +	30	15644657	-	HP0024	-	hypothetical protein	
25	 44.29 +1    23324..25459    	 -	711	15644658	-	HP0025	-	outer membrane protein (omp2)	
26	 44.81 +1    26078..27358    	 -	426	15644659	-	HP0026	C	citrate synthase (gltA)	
27	 42.80       27557..28834    	 +	425	15644660	-	HP0027	C	isocitrate dehydrogenase (icd)	
28	 37.45       28901..29434    	 +	177	15644661	-	HP0028	-	conserved hypothetical secreted protein	
29	 40.03       29411..30067    	 -	218	15644662	-	HP0029	H	dethiobiotin synthetase (bioD)	
30	 36.70       30071..31852    	 -	593	15644663	-	HP0030	-	hypothetical protein	
31	 39.37       31961..32374    	 +	137	15644664	-	HP0031	-	hypothetical protein	
32	 43.12 +1    32405..32680    	 +	91	15644665	-	HP0032	S	conserved hypothetical protein	
33	 39.44       32680..34905    	 +	741	15644666	-	HP0033	O	ATP-dependent C1p protease (clpA)	
34	 42.94 +1    34895..35248    	 +	117	15644667	-	HP0034	H	aspartate 1-decarboxylase (panD)	
35	 40.82       35251..35544    	 +	97	15644668	-	HP0035	S	conserved hypothetical protein	
36	 39.40       35544..36548    	 +	334	15644669	-	HP0036	-	hypothetical protein	
37	 38.16       36556..37611    	 +	351	15644670	-	HP0037	N	NADH-ubiquinone oxidoreductase subunit	
38	 39.97       37738..38475    	 +	245	15644671	-	HP0038	N	hypothetical protein	
39	 36.70       38472..39453    	 +	326	15646206	-	HP0039m	N	Component of conjugal plasmid transfer system	
40	 38.98       39446..39817    	 +	123	15644672	-	HP0041	N	hypothetical protein	
41	 43.02 +1    39880..40581    	 +	233	15644673	-	HP0042	N	trbI protein	
42	 39.14       40651..42063    	 +	470	15644674	-	HP0043	M	mannose-6-phosphate isomerase (pmi) or (algA)	
43	 40.75       42105..43250    	 +	381	15644675	-	HP0044	M	GDP-D-mannose dehydratase (rfbD)	
44	 41.48       43243..44175    	 +	310	15644676	-	HP0045	M	nodulation protein (nolK)	
45	 39.86       44299..44436    	 +	45	15644677	-	HP0046	-	hypothetical protein	
46	 41.34       45041..46039    	 -	332	15644678	-	HP0047	O	hydrogenase expression/formation protein (hypE)	
47	 41.77       46042..48351    	 -	769	15644679	-	HP0048	O	transcriptional regulator (hypF)	
48	 40.18       48291..49283    	 -	330	15644680	-	HP0049	E	hypothetical protein	
49	 39.34       49335..50033    	 -	232	15644681	-	HP0050	L	adenine specific DNA methyltransferase (dpnA)	
50	 38.86       50030..51097    	 -	355	15644682	-	HP0051	L	cytosine specific DNA methyltransferase (DDEM)	
51	 34.74 -1    51272..52264    	 -	330	15644683	-	HP0052	-	hypothetical protein	
52	 29.84 -2    52459..53718    	 -	419	15644684	-	HP0053	-	hypothetical protein	
53	 32.93 -1    53715..56186    	 -	823	15644685	-	HP0054	L	adenine/cytosine DNA methyltransferase	
54	 42.59       56224..57714    	 -	496	15644686	-	HP0055	E	proline permease (putP)	
55	 40.84       57741..61298    	 -	1185	15644687	-	HP0056	C	delta-1-pyrroline-5-carboxylate dehydrogenase	
56	 39.52       61619..61828    	 +	69	15644688	-	HP0057	-	hypothetical protein	
57	 37.43       63145..63999    	 +	284	15644689	-	HP0059	-	hypothetical protein	
58	 39.03       64016..66457    	 +	813	15644690	-	HP0060	-	hypothetical protein	
59	 40.70       66454..67023    	 +	189	15644691	-	HP0061	-	hypothetical protein	
60	 39.46       67039..67299    	 +	86	15644692	-	HP0062	-	hypothetical protein	
61	 38.83       67310..68800    	 +	496	15644693	-	HP0063	-	hypothetical protein	
62	 39.52       68770..69189    	 +	139	15644694	-	HP0064	-	hypothetical protein	
63	 35.59       69191..69544    	 +	117	15644695	-	HP0065	-	hypothetical protein	
64	 40.06       69468..71963    	 +	831	15644696	-	HP0066	D	conserved hypothetical ATP-binding protein	
65	 43.86 +1    72021..72818    	 -	265	15644697	-	HP0067	O	urease accessory protein (ureH)	
66	 44.83 +1    72818..73417    	 -	199	15644698	-	HP0068	O	urease accessory protein (ureG)	
67	 40.92       73446..74210    	 -	254	15644699	-	HP0069	O	urease accessory protein (ureF)	
68	 40.74       74233..74745    	 -	170	15644700	-	HP0070	O	urease accessory protein (ureE)	
69	 43.54 +1    74747..75334    	 -	195	15644701	-	HP0071	-	urease accessory protein (ureI)	
70	 44.21 +1    75527..77236    	 -	569	15644702	-	HP0072	E	urease beta subunit (urea amidohydrolase) (ureB)	
71	 41.84       77240..77956    	 -	238	15644703	-	HP0073	E	urease alpha subunit (ureA) (urea amidohydrolase)	
72	 36.92       78302..78775    	 -	157	15644704	-	HP0074	N	lipoprotein signal peptidase (lspA)	
73	 41.26       78769..80106    	 -	445	15644705	-	HP0075	G	urease protein (ureC)	
74	 38.89       80196..80465    	 +	89	15644706	-	HP0076	J	ribosomal protein S20 (rps20)	
75	 42.87       80589..81647    	 +	352	15644707	-	HP0077	J	peptide chain release factor RF-1 (prfA)	
76	 43.41 +1    82058..82315    	 +	85	15644708	-	HP0078	-	hypothetical protein	
77	 43.06 +1    82326..84113    	 +	595	15644709	-	HP0079	-	outer membrane protein (omp3)	
78	 42.14       84359..86140    	 +	593	15644710	-	HP0080	-	hypothetical protein	
79	 39.84       86410..86532    	 +	40	15644711	-	HP0081	-	hypothetical protein	
80	 39.17       86656..88677    	 -	673	15644712	-	HP0082	N	methyl-accepting chemotaxis transducer (tlpC)	
81	 42.82       88833..89222    	 -	129	15644713	-	HP0083	J	ribosomal protein S9 (rps9)	
82	 42.02       89219..89644    	 -	141	15644714	-	HP0084	J	ribosomal protein L13 (rpl13)	
83	 37.04       89957..90145    	 -	62	15644715	-	HP0085	-	hypothetical protein	
84	 40.80       90152..91504    	 -	450	15644716	-	HP0086	R	conserved hypothetical protein	
85	 39.59       91558..92931    	 -	457	15644717	-	HP0087	M	hypothetical protein	
86	 39.09       92952..94967    	 -	671	15644718	-	HP0088	K	RNA polymerase sigma-70 factor (rpoD)	
87	 42.82       95191..95886    	 -	231	15644719	-	HP0089	F	pfs protein (pfs)	
88	 42.80       95897..96826    	 -	309	15644720	-	HP0090	I	malonyl coenzyme A-acyl carrier protein transacylase (fabD)	
89	 30.70 -2    97256..98089    	 +	277	15644721	-	HP0091	-	type II restriction enzyme R protein (hsdR)	
90	 39.81       98083..98916    	 +	277	15644722	-	HP0092	L	type II restriction enzyme M protein (hsdM)	
91	 41.27       98936..99376    	 -	146	15644723	-	HP0093	-	hypothetical protein	
92	 40.17       99373..99840    	 -	155	15644724	-	HP0094	-	conserved hypothetical protein	
93	 36.91       99939..100469   	 -	176	15644725	-	HP0095	-	hypothetical protein	
94	 40.11      100542..101486   	 +	314	15644726	-	HP0096	C	phosphoglycerate dehydrogenase	
95	 42.02      101643..102356   	 -	237	15644727	-	HP0097	-	hypothetical protein	
96	 40.52      102461..103921   	 -	486	15644728	-	HP0098	E	threonine synthase (thrC)	
97	 39.45      104125..106152   	 +	675	15644729	-	HP0099	N	methyl-accepting chemotaxis protein (tlpA)	
98	 38.48      106152..107258   	 +	368	15644730	-	HP0100	S	conserved hypothetical protein	
99	 34.25 -1   107471..108232   	 +	253	15644731	-	HP0101	-	hypothetical protein	
100	 38.33      108215..108994   	 -	259	15644732	-	HP0102	M	conserved hypothetical protein	

 
 39.13 MEAN 
 
 3.75  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.