IslandPathversion 1.0 




IslandPath Analysis: Haemophilus influenzae Rd-KW20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.39   STD DEV: 3.53

Haemophilus influenzae Rd, complete genome - 0..1830138
1714 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.78           2..1021     	 +	339	16271977	HI0001	HI0001	G	glyceraldehyde-3-phosphate dehydrogenase (gapdH)	
2	 37.28        1190..3013     	 +	607	16271978	HI0002	HI0002	I	long chain fatty acid coA ligase, putative	
3	 36.63        3050..3838     	 -	262	16271979	HI0003	HI0003	R	conserved hypothetical protein	
4	 43.23 +1     3854..4318     	 -	154	16271980	HI0004	HI0004	R	conserved hypothetical protein	
5	 36.41        4579..5391     	 -	270	16271981	HI0005	HI0005	C	fdhD protein (fdhD)	
6	 39.97        5662..8748     	 +	1028	16273678	fdnG	HI0006m	C	Formate dehydrogenase large subunit	
7	 41.43        8750..9688     	 +	312	16271982	HI0007	HI0007	C	formate dehydrogenase, beta subunit (fdxH)	
8	 38.49        9681..10397    	 +	238	16271983	HI0008	HI0008	C	formate dehydrogenase, gamma subunit (fdxI)	
9	 36.63       10467..11375    	 +	302	16271984	HI0009	HI0009	O	fdhE protein (fdhE)	
10	 35.15       11414..11854    	 -	146	16271985	HI0010	HI0010	R	ribosomal-protein-alanine acetyltransferase (rimI)	
11	 40.99       11857..12261    	 -	134	16271986	HI0011	HI0011	L	DNA polymerase III, psi subunit (holD)	
12	 36.56       12367..13359    	 +	330	16271987	HI0012	HI0012	J	conserved hypothetical protein	
13	 38.61       13423..14331    	 -	302	16271988	HI0013	HI0013	R	GTP-binding protein (era)	
14	 41.67       14328..15011    	 -	227	16271989	HI0014	HI0014	K	ribonuclease III (rnc)	
15	 38.95       15013..16062    	 -	349	16271990	HI0015	HI0015	N	signal peptidase I (lepB)	
16	 39.96       16071..17867    	 -	598	16271991	HI0016	HI0016	N	GTP-binding membrane protein (lepA)	
17	 38.54       18035..18418    	 -	127	16271992	HI0017	HI0017	R	conserved hypothetical protein	
18	 40.61       18676..19335    	 +	219	16271993	HI0018	HI0018	L	uracil DNA glycosylase (ung)	
19	 41.47       19405..20829    	 -	474	16271994	HI0019	HI0019	J	conserved hypothetical protein	
20	 40.76       21248..22687    	 -	479	16271995	HI0020	HI0020	P	transport protein, putative	
21	 37.65       22689..23939    	 -	416	16271996	HI0021	HI0021	H	citG protein (citG)	
22	 41.25       24267..25769    	 -	500	16271997	HI0022	HI0022	C	citrate lyase, alpha chain (citF)	
23	 42.01 +1    25784..26659    	 -	291	16271998	HI0023	HI0023	G	citrate lyase, beta chain (citE)	
24	 42.36 +1    26656..26943    	 -	95	16271999	HI0024	HI0024	C	citrate lyase, gamma chain (citD)	
25	 35.02       26981..27988    	 -	335	16272000	HI0025	HI0025	C	citrate lyase ligase (citC)	
26	 39.98       28239..29201    	 -	320	16272001	HI0026	HI0026	H	lipoate biosynthesis protein A (lipA)	
27	 37.40       29255..29893    	 -	212	16272002	HI0027	HI0027	H	lipoate biosynthesis protein B (lipB)	
28	 32.26 -1    29895..30173    	 -	92	16272003	HI0028	HI0028	S	conserved hypothetical protein	
29	 35.36       30229..31410    	 -	393	16272004	HI0029	HI0029	M	penicillin-binding protein 5 (dacA)	
30	 34.61 -1    31426..32289    	 -	287	16272005	HI0030	HI0030	M	lipoprotein, putative	
31	 38.62       32341..33456    	 -	371	16272006	HI0031	HI0031	D	rod shape-determining protein (rodA)	
32	 38.55       33446..35401    	 -	651	16272007	HI0032	HI0032	M	penicillin-binding protein 2 (pbp2)	
33	 45.73 +2    35422..35889    	 -	155	16272008	HI0033	HI0033	S	conserved hypothetical protein	
34	 38.83       35943..36251    	 -	102	16272009	HI0034	HI0034	S	conserved hypothetical protein	
35	 41.67       36376..38031    	 -	551	16272010	HI0035	HI0035	R	conserved hypothetical protein	
36	 37.32       38237..40015    	 +	592	16272011	HI0036	HI0036	I	ABC transporter, ATP-binding protein	
37	 39.93       40064..41200    	 +	378	16272012	HI0037	HI0037	D	rod shape-determining protein (mreB)	
38	 37.50       41280..42335    	 +	351	16272013	HI0038	HI0038	M	rod shape-determining protein (mreC)	
39	 34.97       42335..42823    	 +	162	16272014	HI0039	HI0039	M	rod shape-determining protein (mreD)	
40	 31.79 -1    42874..43650    	 -	258	16272015	HI0040	HI0040	-	conserved hypothetical protein	
41	 37.94       43660..44463    	 -	267	16272016	HI0041	HI0041	L	exodeoxyribonuclease III (xthA)	
42	 35.26       44511..45185    	 -	224	16272017	HI0042	HI0042	J	conserved hypothetical protein	
43	 35.68       45185..46249    	 -	354	16272018	HI0043	HI0043	S	conserved hypothetical transmembrane protein	
44	 36.05       46309..46971    	 -	220	16272019	HI0044	HI0044	R	conserved hypothetical transmembrane protein	
45	 36.22       47298..47852    	 -	184	16272020	HI0045	HI0045	R	conserved hypothetical protein	
46	 33.61 -1    47919..48281    	 +	120	16272021	HI0046	HI0046	P	alkylphosphonate uptake protein (phnA)	
47	 38.18       48334..48972    	 -	212	16272022	HI0047	HI0047	G	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase (eda)	
48	 34.38 -1    48991..49848    	 -	285	16272023	HI0048	HI0048	Q	oxidoreductase	
49	 35.34       49848..50792    	 -	314	16272024	HI0049	HI0049	G	2-dehydro-3-deoxygluconokinase (kdgK)	
50	 34.29 -1    50812..52068    	 -	418	16273630	-	HI0050m	S	Integral membrane protein, possible transporter	
51	 31.33 -1    52092..52589    	 -	165	16272025	HI0051	HI0051	S	conserved hypothetical transmembrane protein	
52	 28.88 -2    52628..53614    	 -	328	16272026	HI0052	HI0052	G	conserved hypothetical protein	
53	 34.60 -1    53641..54669    	 -	342	16272027	HI0053	HI0053	E	zinc-type alcohol dehydrogenase	
54	 30.96 -2    54779..55579    	 +	266	16272028	HI0054	HI0054	K	uxu operon regulator (uxuR)	
55	 37.97       55607..56791    	 +	394	16272029	HI0055	HI0055	G	mannonate dehydratase (uxuA)	
56	 37.68       56844..57557    	 -	237	16272030	HI0056	HI0056	P	conserved hypothetical transmembrane protein	
57	 39.07       57655..59484    	 -	609	16272031	HI0057	HI0057	L	excinuclease ABC, subunit C (uvrC)	
58	 40.52       59486..60250    	 -	254	16272032	HI0058	HI0058	M	3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB)	
59	 39.74       60321..61319    	 -	332	16272033	HI0059	HI0059	N	conserved hypothetical protein	
60	 37.64       61392..63155    	 -	587	16272034	HI0060	HI0060	Q	ABC transporter, ATP-binding protein (msbA)	
61	 38.23       63196..65562    	 -	788	16272035	HI0061	HI0061	R	recombination protein (rec2)	
62	 40.41       65821..66258    	 +	145	16272036	HI0062	HI0062	T	dnaK suppressor protein (dksA)	
63	 41.35       66506..67864    	 +	452	16272037	HI0063	HI0063	J	poly(A) polymerase (pcnB)	
64	 39.13       67873..68355    	 +	160	16272038	HI0064	HI0064	H	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine-pyrophosphokinase (folK)	
65	 34.17 -1    68431..68907    	 +	158	16272039	HI0065	HI0065	R	conserved hypothetical protein	
66	 32.56 -1    68915..70213    	 +	432	16272040	HI0066	HI0066	N	N-acetylmuramoyl-L-alanine amidase, putative	
67	 39.52       70214..72103    	 +	629	16272041	HI0067	HI0067	L	DNA mismatch repair protein (mutL)	
68	 43.06 +1    72111..73046    	 +	311	16272042	HI0068	HI0068	J	tRNA delta(2)-isopentenylpyrophosphate transferase (trpX)	
69	 38.02       73052..75997    	 +	981	16272043	HI0069	HI0069	O	glutamate-ammonia-ligase adenylyltransferase (glnE)	
70	 37.69       76082..77758    	 -	558	16272044	HI0070	HI0070	L	DNA repair protein (recN)	
71	 38.17       77902..78687    	 -	261	16272045	HI0072	HI0072	R	conserved hypothetical protein	
72	 38.58       78751..79455    	 +	234	16272046	HI0071	HI0071	O	heat shock protein (grpE)	
73	 37.39       79468..79812    	 -	114	16272047	HI0073	HI0073	R	H. influenzae predicted coding region HI0073	
74	 32.43 -1    79805..80245    	 -	146	16272048	HI0074	HI0074	-	H. influenzae predicted coding region HI0074	
75	 41.71       80526..82649    	 +	707	16272049	HI0075	HI0075	F	anaerobic ribonucleoside-triphosphate reductase (nrdD)	
76	 38.91       82767..83627    	 +	286	16272050	HI0076	HI0076	I	acyl-CoA thioesterase II (tesB)	
77	 40.14       83638..84504    	 +	288	16272051	HI0077	HI0077	S	H. influenzae predicted coding region HI0077	
78	 40.29       84580..85959    	 -	459	16272052	HI0078	HI0078	J	cysteinyl-tRNA synthetase (cysS)	
79	 37.25       86062..86571    	 +	169	16272053	HI0079	HI0079	O	peptidyl-prolyl cis-trans isomerase B (ppiB)	
80	 31.94 -1    86575..87006    	 +	143	16272054	HI0080	HI0080	S	conserved hypothetical protein	
81	 38.78       87148..87936    	 +	262	16272055	HI0081	HI0081	L	conserved hypothetical protein	
82	 38.58       88193..88459    	 +	88	16272056	HI0082	HI0082	-	H. influenzae predicted coding region HI0082	
83	 38.43       88474..88689    	 +	71	16272057	HI0083	HI0083	-	H. influenzae predicted coding region HI0083	
84	 35.80       88739..89062    	 -	107	16272058	HI0084	HI0084	O	thioredoxin (trxM)	
85	 39.16       89182..90177    	 -	331	16272059	HI0085	HI0085	C	D-lactate dehydrogenase, fermentative (ldhA)	
86	 38.31       90190..91335    	 -	381	16272060	HI0086	HI0086	E	cystathionine gamma-synthase (metB)	
87	 39.67       92148..93425    	 -	425	16272061	HI0087	HI0087	E	threonine synthase (thrC)	
88	 38.62       93468..94412    	 -	314	16272062	HI0088	HI0088	E	homoserine kinase (thrB)	
89	 40.52       94425..96872    	 -	815	16272063	HI0089	HI0089	E	aspartokinase I / homoserine dehydrogenase I (thrA)	
90	 38.38       97196..97909    	 +	237	16272064	HI0090	HI0090	R	conserved hypothetical protein	
91	 44.50 +1    97949..99085    	 -	378	16272065	HI0091	HI0091	G	conserved hypothetical protein	
92	 43.41 +1    99094..100353   	 -	419	16272066	HI0092	HI0092	G	H. influenzae predicted coding region HI0092	
93	 37.49      100475..101581   	 -	368	16272067	HI0093	HI0093	K	conserved hypothetical protein	
94	 36.76      101783..102103   	 -	106	16272068	HI0094	HI0094	M	H. influenzae predicted coding region HI0094	
95	 28.07 -2   102194..102364   	 +	56	16273631	-	HI0094a	K	Uncharacterized protein	
96	 37.83      102453..103208   	 -	251	16272069	HI0095	HI0095	Q	conserved hypothetical protein	
97	 30.56 -2   103542..104117   	 +	191	16272070	HI0096	HI0096	-	H. influenzae predicted coding region HI0096	
98	 39.66      104390..105274   	 +	294	16272071	HI0097	HI0097	H	iron(III) ABC transporter, periplasmic-binding protein (hitA)	
99	 39.03      105491..106912   	 +	473	16272072	HI0098	HI0098	H	iron(III) ABC transporter, permease protein (hitB)	
100	 38.26      106914..107969   	 +	351	16272073	HI0099	HI0099	P	iron(III) ABC transporter, ATP-binding protein (hitC)	

 
 38.39 MEAN 
 
 3.53  STD DEV 






Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.