IslandPath Analysis: Halobacterium sp. NRC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.88   STD DEV: 5.16
Halobacterium sp. NRC-1, complete genome - 0..2014239
2075 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.34         248..1453     	 +	401	15789341	VNG0001H	VNG0001H	M	Vng0001h	
2	 64.86        1450..2115     	 +	221	15789342	yvrO	VNG0002G	R	amino acid ABC transporter, ATP-binding protein	
3	 62.79        2145..3254     	 +	369	15789343	VNG0003C	VNG0003C	R	Vng0003c	
4	 69.98        3322..5643     	 +	773	15789344	VNG0005H	VNG0005H	-	Vng0005h	
5	 69.10        5646..7451     	 -	601	15789345	glmS	VNG0006G	M	glutamine-fructose-6-phosphate transaminase	
6	 69.19        7454..8641     	 -	395	15789346	graD5	VNG0008G	M	glucose-1-phosphate thymidylyltransferase	
7	 69.24        8655..9860     	 -	401	15789347	graD2	VNG0009G	M	glucose-1-phosphate thymidylyltransferase	
8	 66.32        9980..11413    	 +	477	15789348	VNG0011C	VNG0011C	M	Vng0011c	
9	 60.69 -1    11478..12614    	 -	378	15789349	VNG0013C	VNG0013C	L	Vng0013c	
10	 59.05 -1    12978..13187    	 +	69	15789350	VNG0014C	VNG0014C	E	Vng0014c	
11	 62.30 -1    13462..13644    	 -	60	15789351	VNG0015H	VNG0015H	-	Vng0015h	
12	 61.29 -1    13809..14180    	 -	123	15789352	VNG0016H	VNG0016H	-	Vng0016h	
13	 57.58 -1    14484..14780    	 +	98	15789353	VNG0017H	VNG0017H	-	Vng0017h	
14	 56.44 -2    14868..15131    	 +	87	15789354	VNG0018H	VNG0018H	-	Vng0018h	
15	 49.49 -2    15310..15408    	 +	32	15789355	VNG0019H	VNG0019H	-	Vng0019h	
16	 46.29 -2    15419..16051    	 -	210	15789356	VNG0020H	VNG0020H	-	Vng0020h	
17	 59.41 -1    16342..17706    	 +	454	15789357	VNG0021H	VNG0021H	L	Vng0021h	
18	 58.06 -1    18357..18902    	 +	181	15789358	VNG0022H	VNG0022H	-	Vng0022h	
19	 58.65 -1    18895..19530    	 +	211	15789359	VNG0023H	VNG0023H	-	Vng0023h	
20	 59.19 -1    19703..20023    	 -	106	15789360	VNG0024H	VNG0024H	-	Vng0024h	
21	 55.30 -2    20219..20482    	 -	87	15789361	VNG0025H	VNG0025H	-	Vng0025h	
22	 59.85 -1    20533..21456    	 -	307	15789362	VNG0026C	VNG0026C	L	Vng0026c	
23	 59.57 -1    22103..22750    	 -	215	15789363	VNG0027H	VNG0027H	-	Vng0027h	
24	 57.66 -1    23336..23890    	 +	184	15789364	VNG0028C	VNG0028C	L	Vng0028c	
25	 55.92 -2    24109..24564    	 -	151	15789365	VNG0029H	VNG0029H	-	Vng0029h	
26	 54.55 -2    26201..26596    	 +	131	15789366	VNG0030H	VNG0030H	-	Vng0030h	
27	 55.65 -2    26648..29008    	 +	786	15789367	VNG0031H	VNG0031H	-	Vng0031h	
28	 50.78 -2    29046..29429    	 +	127	15789368	VNG0032H	VNG0032H	-	Vng0032h	
29	 59.82 -1    29476..29913    	 -	145	15789369	VNG0033H	VNG0033H	-	Vng0033h	
30	 61.76 -1    29913..30014    	 -	33	15789370	VNG0034H	VNG0034H	-	Vng0034h	
31	 60.39 -1    30356..31168    	 -	270	15789371	VNG0035H	VNG0035H	L	Vng0035h	
32	 56.63 -2    31838..32086    	 +	82	15789372	VNG0037H	VNG0037H	-	Vng0037h	
33	 56.47 -2    32101..32355    	 +	84	15789373	VNG0038H	VNG0038H	-	Vng0038h	
34	 57.44 -2    32555..32890    	 -	111	15789374	VNG0039H	VNG0039H	-	Vng0039h	
35	 57.72 -1    33182..33628    	 -	148	15789375	VNG0040C	VNG0040C	K	Vng0040c	
36	 59.80 -1    33610..33915    	 -	101	15789376	VNG0041C	VNG0041C	-	Vng0041c	
37	 56.28 -2    34651..35931    	 -	426	15789377	ntp	VNG0042G	L	neutral proteinase	
38	 54.96 -2    36321..36713    	 +	130	15789378	VNG0043H	VNG0043H	L	Vng0043h	
39	 61.89 -1    36715..37971    	 +	418	15789379	VNG0044H	VNG0044H	L	Vng0044h	
40	 56.71 -2    38017..39432    	 +	471	15789380	VNG0045C	VNG0045C	L	Vng0045c	
41	 60.63 -1    39611..40903    	 -	430	15789381	ugd	VNG0046G	M	UDP-glucose dehydrogenase	
42	 62.00 -1    40991..41719    	 +	242	16554457	graD6	VNG0047Gm	M	dTDP-glucose pyrophosphorylase	
43	 40.00 -2    41880..42659    	 +	259	15789383	VNG0049H	VNG0049H	Q	Vng0049h	
44	 43.45 -2    42707..44149    	 +	480	15789384	VNG0050C	VNG0050C	R	Vng0050c	
45	 50.58 -2    44245..45456    	 -	403	15789385	rfbU1	VNG0051G	M	LPS biosynthesis	
46	 55.14 -2    47199..48473    	 -	424	15789386	VNG0052H	VNG0052H	L	Vng0052h	
47	 51.97 -2    48767..49222    	 +	151	15789387	VNG0053H	VNG0053H	-	Vng0053h	
48	 52.98 -2    49352..49972    	 -	206	15789388	VNG0054H	VNG0054H	-	Vng0054h	
49	 54.31 -2    49985..50251    	 +	88	15789389	VNG0055H	VNG0055H	-	Vng0055h	
50	 59.84 -1    50564..51970    	 -	468	15789390	VNG0056H	VNG0056H	L	Vng0056h	
51	 52.64 -2    53192..54367    	 +	391	15789391	VNG0057H	VNG0057H	-	Vng0057h	
52	 46.86 -2    54696..55745    	 -	349	15789392	VNG0058H	VNG0058H	-	Vng0058h	
53	 59.06 -1    56287..57561    	 +	424	15789393	VNG0059H	VNG0059H	L	Vng0059h	
54	 50.70 -2    57660..58661    	 -	333	15789394	lpg	VNG0060G	M	LPS glycosyltransferase	
55	 53.83 -2    58827..60182    	 +	451	15789395	VNG0061C	VNG0061C	P	Vng0061c	
56	 59.00 -1    60609..61625    	 -	338	15789396	lpb	VNG0062G	M	LPS biosynthesis protein	
57	 60.59 -1    61700..62686    	 -	328	15789397	galE2	VNG0063G	M	UDP-glucose 4-epimerase	
58	 57.88 -1    62927..63643    	 +	238	15789398	graD3	VNG0064G	M	glucose-1-phosphate thymidylyltransferase	
59	 61.94 -1    63881..64810    	 +	309	15789399	gmd	VNG0065G	M	GDP-D-mannose dehydratase	
60	 58.87 -1    64976..65206    	 +	76	15789400	VNG0066H	VNG0066H	S	Vng0066h	
61	 55.56 -2    65203..65472    	 +	89	15789401	VNG0067H	VNG0067H	-	Vng0067h	
62	 57.41 -2    65671..65832    	 +	53	15789402	VNG0068H	VNG0068H	-	Vng0068h	
63	 53.03 -2    66054..66251    	 +	65	15789403	VNG0069H	VNG0069H	-	Vng0069h	
64	 57.82 -1    66241..66534    	 +	97	15789404	VNG0070H	VNG0070H	-	Vng0070h	
65	 64.14       67057..67491    	 -	144	15789405	VNG0072H	VNG0072H	R	Vng0072h	
66	 63.97       67908..68204    	 +	98	15789406	VNG0073C	VNG0073C	M	Vng0073c	
67	 60.89 -1    68290..68514    	 +	74	15789407	VNG0075H	VNG0075H	-	Vng0075h	
68	 54.17 -2    69300..69419    	 -	39	15789408	VNG0076H	VNG0076H	-	Vng0076h	
69	 63.09       69967..70749    	 +	260	15789409	VNG0077H	VNG0077H	-	Vng0077h	
70	 66.20       71127..71342    	 -	71	15789410	VNG0079H	VNG0079H	-	Vng0079h	
71	 68.06       71317..71748    	 +	143	15789411	VNG0080H	VNG0080H	-	Vng0080h	
72	 71.48       71811..72704    	 +	297	15789412	moaE	VNG0081G	H	molybdenum cofactor biosynthesis protein	
73	 69.18       72708..73544    	 -	278	15789413	moeB	VNG0084G	H	molybdenum cofactor biosynthesis protein	
74	 69.38       73639..74742    	 +	367	15789414	moaA	VNG0085G	H	molybdenum cofactor biosynthesis protein	
75	 75.74 +1    74752..76647    	 -	631	16554458	moeA2	VNG0086Gm	P	Molybdopterin biosynthesis enzyme	
76	 74.92 +1    76644..77867    	 -	407	15789416	moeA1	VNG0090G	H	molybdenum cofactor biosynthesis protein	
77	 75.20 +1    77923..78660    	 -	245	15789417	pimT1	VNG0089G	O	L-isoaspartyl protein carboxyl methyltransferase	
78	 76.07 +1    78683..79597    	 -	304	15789418	VNG0091C	VNG0091C	-	Vng0091c	
79	 67.42       79662..80327    	 -	221	15789419	VNG0094C	VNG0094C	S	Vng0094c	
80	 71.13       80387..81328    	 -	313	15789420	VNG0096C	VNG0096C	E	Vng0096c	
81	 69.84       81452..82459    	 +	335	15789421	gapB	VNG0095G	G	glyceraldehyde 3-phosphate dehydrogenase	
82	 64.34       82540..82926    	 +	128	15789422	hsp2	VNG0097G	O	putative heat shock protein	
83	 71.21       82932..83789    	 -	285	15789423	rimK	VNG0098G	H	ribosomal protein S6 modification protein	
84	 65.54       83885..84415    	 -	176	15789424	rpl10e	VNG0099G	J	50S ribosomal protein L10E	
85	 58.22 -1    84617..84841    	 -	74	15789425	cspD1	VNG0101G	K	cold shock protein	
86	 65.30       84927..85583    	 -	218	15789426	VNG0102C	VNG0102C	R	Vng0102c	
87	 74.18 +1    85640..86611    	 -	323	15789427	serA3	VNG0104G	E	phosphoglycerate dehydrogenase	
88	 71.81       86734..87219    	 -	161	15789428	VNG0105H	VNG0105H	-	Vng0105h	
89	 62.80       87668..89167    	 +	499	15789429	rmeM	VNG0106G	L	type I restriction modification enzyme, M subunit	
90	 49.58 -2    89160..90587    	 +	475	15789430	rmeS	VNG0107G	L	type I restriction modification enzyme, S subunit	
91	 63.04       90639..93641    	 +	1000	15789431	rmeR	VNG0108G	L	type I restriction modification enzyme, R subunit	
92	 61.85 -1    93634..94359    	 +	241	15789432	VNG0110C	VNG0110C	R	Vng0110c	
93	 58.99 -1    96010..96543    	 -	177	15789433	VNG0112H	VNG0112H	-	Vng0112h	
94	 68.29       97444..98121    	 +	225	15789434	VNG0113H	VNG0113H	R	Vng0113h	
95	 67.82       98226..99008    	 +	260	15789435	yusZ1	VNG0115G	Q	oxidoreductase	
96	 51.52 -2   100891..101715   	 -	274	15789436	VNG0116H	VNG0116H	-	Vng0116h	
97	 65.22      102034..102309   	 -	91	15789437	VNG0117H	VNG0117H	-	Vng0117h	
98	 64.32      102309..102692   	 -	127	15789438	VNG0118H	VNG0118H	-	Vng0118h	
99	 60.38 -1   102863..103021   	 -	52	15789439	VNG0119H	VNG0119H	-	Vng0119h	
100	 57.14 -2   103021..103146   	 -	41	15789440	VNG0120H	VNG0120H	-	Vng0120h	

 
 67.88 MEAN 
 
 5.16  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.