IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 0..3218031
3113 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 38.91          59..1402     	 +	447	29374662	dnaA	EF0001	-	chromosomal replication initiator protein DnaA	
2	 34.39        1604..2734     	 +	376	29374663	dnaN	EF0002	-	DNA polymerase III, beta subunit	
3	 41.87 +1     3313..3558     	 +	81	29374664	-	EF0003	-	conserved hypothetical protein	
4	 37.77        3545..4672     	 +	375	29374665	recF	EF0004	-	DNA replication and repair protein RecF	
5	 41.37        4690..6618     	 +	642	29374666	gyrB	EF0005	-	DNA gyrase, B subunit	
6	 40.89        6674..9175     	 +	833	29374667	gyrA	EF0006	-	DNA gyrase, A subunit	
7	 37.62        9350..9652     	 +	100	29374668	rpsF	EF0007	-	ribosomal protein S6	
8	 38.62        9697..10263    	 +	188	29374669	ssb-1	EF0008	-	single-strand binding protein	
9	 39.58       10289..10528    	 +	79	29374670	rpsR	EF0009	-	ribosomal protein S18	
10	 37.78       10733..12709    	 +	658	29374671	-	EF0011	-	DHH family protein	
11	 36.64       12715..13167    	 +	150	29374672	rplI	EF0012	-	ribosomal protein L9	
12	 39.47       13440..14807    	 +	455	29374673	dnaB	EF0013	-	replicative DNA helicase	
13	 38.36       15044..16336    	 +	430	29374674	purA	EF0014	-	adenylosuccinate synthetase	
14	 37.70       16461..17330    	 +	289	29374675	-	EF0016	-	DegV family protein	
15	 36.89       17370..19001    	 -	543	29374676	-	EF0017	-	ABC transporter, ATP-binding protein	
16	 38.25       19254..22139    	 +	961	29374677	-	EF0018	-	sigma-54 interaction domain protein	
17	 39.77       22341..22853    	 +	170	29374678	-	EF0019	-	PTS system, IIB component	
18	 38.87       23088..24080    	 +	330	29374679	-	EF0020	-	PTS system, mannose-specific IIAB components	
19	 41.92 +1    24115..24918    	 +	267	29374680	-	EF0021	-	PTS system, mannose-specific IIC component	
20	 40.24       24941..25852    	 +	303	29374681	-	EF0022	-	PTS system, mannose-specific IID component	
21	 37.57       26014..26391    	 +	125	29374682	-	EF0024	-	conserved hypothetical protein	
22	 32.01 -1    26639..27166    	 +	175	29374683	-	EF0025	-	membrane protein, putative	
23	 38.24       27213..27416    	 -	67	29374684	-	EF0026	-	conserved hypothetical protein	
24	 40.99       27614..28384    	 +	256	29374685	-	EF0027	-	phosphosugar-binding transcriptional regulator, putative	
25	 40.60       28533..30101    	 +	522	29374686	-	EF0028	-	PTS system, IIBC components	
26	 40.74       30116..31330    	 +	404	29374687	-	EF0029	-	aminotransferase, class II	
27	 38.32       31430..31810    	 +	126	29374688	-	EF0030	-	endoribonuclease L-PSP, putative	
28	 38.66       32001..34592    	 +	863	29374689	-	EF0031	-	membrane protein, putative	
29	 37.46       34629..37244    	 -	871	29374690	-	EF0032	-	membrane protein, putative	
30	 26.00 -2    37660..37809    	 -	49	29374691	-	EF0033	-	hypothetical protein	
31	 40.00       37788..38297    	 -	169	29374692	-	EF0034	-	conserved hypothetical protein	
32	 38.25       38305..38772    	 -	155	29374693	-	EF0035	-	conserved hypothetical protein	
33	 35.36       38849..39784    	 +	311	29374694	-	EF0036	-	conserved hypothetical protein	
34	 42.66 +1    39876..41129    	 -	417	29374695	proA	EF0037	-	gamma-glutamyl phosphate reductase	
35	 36.89       41116..41931    	 -	271	29374696	proB	EF0038	-	glutamate 5-kinase	
36	 39.38       42257..42736    	 +	159	29374697	-	EF0039	-	deoxyuridine 5`-triphosphate nucleotidohydrolase, putative	
37	 41.94 +1    42815..44185    	 +	456	29374698	radA	EF0040	-	DNA repair protein RadA	
38	 37.70       44286..45431    	 +	381	29374699	-	EF0041	-	PIN domain protein	
39	 41.35       45450..45923    	 +	157	29374700	ispF	EF0042	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	
40	 38.89       45976..47433    	 +	485	29374701	gltX	EF0043	-	glutamyl-tRNA synthetase	
41	 46.85 +2    47703..48242    	 +	179	29374702	cysE	EF0044	-	serine O-acetyltransferase	
42	 40.48       48235..49647    	 +	470	29374703	cysS	EF0045	-	cysteinyl-tRNA synthetase	
43	 39.85       49644..50042    	 +	132	29374704	-	EF0046	-	conserved hypothetical protein	
44	 42.87 +1    50032..50880    	 +	282	29374705	-	EF0047	-	RNA methyltransferase, TrmH family	
45	 40.11       50895..51425    	 +	176	29374706	-	EF0048	-	conserved hypothetical protein	
46	 37.57       51511..52077    	 +	188	29374707	-	EF0049	-	sigma-70 factor family protien	
47	 39.84       52192..52437    	 +	81	29374708	-	EF0050	-	conserved hypothetical protein	
48	 41.43       52618..53469    	 +	283	29374709	ispE	EF0051	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	
49	 29.03 -1    53530..54156    	 -	208	29374710	-	EF0052	-	hypothetical protein	
50	 31.38 -1    54156..55025    	 -	289	29374711	dnaQ	EF0053	-	DNA polymerase III, epsilon subunit	
51	 31.63 -1    55025..55435    	 -	136	29374712	-	EF0054	-	hypothetical protein	
52	 41.19       55754..56707    	 +	317	29374713	-	EF0055	-	adhesion lipoprotein	
53	 38.82       56733..57425    	 +	230	29374714	-	EF0056	-	ABC transporter, ATP-binding protein	
54	 37.62       57587..58426    	 +	279	29374715	-	EF0057	-	ABC transporter, permease protein	
55	 40.15       58570..59391    	 +	273	29374716	purR	EF0058	-	pur operon repressor PurR	
56	 40.38       59602..60978    	 +	458	29374717	glmU	EF0059	-	UDP-N-acetylglucosamine pyrophosphorylase	
57	 41.20       61420..65361    	 +	1313	29374718	-	EF0062	-	5'-nucleotidase family protein	
58	 40.95       65497..67176    	 +	559	29374719	-	EF0063	-	pheromone binding protein, putative	
59	 34.22       67223..67447    	 -	74	29374720	-	EF0064	-	conserved hypothetical protein	
60	 42.05 +1    67462..68448    	 -	328	29374721	-	EF0065	-	bacterial luciferase family protein	
61	 39.51       68667..69281    	 +	204	29374722	ruvA	EF0066	-	Holliday junction DNA helicase RuvA	
62	 42.38 +1    69294..70310    	 +	338	29374723	ruvB	EF0067	-	Holliday junction DNA helicase RuvB	
63	 31.51 -1    70434..70871    	 -	145	29374724	-	EF0068	-	hypothetical protein	
64	 40.20       71084..71782    	 +	232	29374725	-	EF0069	-	N-acetylmannosamine-6-phosphate epimerase, putative	
65	 39.19       71960..74299    	 +	779	29374726	-	EF0071	-	lipoprotein, putative	
66	 34.42       74846..75763    	 +	305	29374727	-	EF0073	-	transcriptional regulator, Cro/CI family	
67	 33.79       75810..76463    	 -	217	29374728	-	EF0074	-	transcriptional regulator, Crp/Fnr family	
68	 44.41 +1    76736..77629    	 +	297	29374729	-	EF0076	-	oxidoreductase, short chain dehydrogenase/reductase family	
69	 41.71 +1    77642..78214    	 +	190	29374730	-	EF0077	-	conserved hypothetical protein	
70	 37.50       78227..78418    	 +	63	29374731	-	EF0078	-	conserved hypothetical protein	
71	 39.38       78431..78943    	 +	170	29374732	-	EF0079	-	gls24 protein	
72	 35.47       79002..79562    	 +	186	29374733	-	EF0080	-	gls24 protein	
73	 44.44 +1    79586..79828    	 +	80	29374734	-	EF0081	-	membrane protein, putative	
74	 37.22       80195..81430    	 +	411	29374735	-	EF0082	-	major facilitator family transporter	
75	 38.33       81451..81630    	 +	59	29374736	-	EF0083	-	hypothetical protein	
76	 33.33       81786..82169    	 -	127	29374737	-	EF0084	-	hypothetical protein	
77	 34.69       82166..83269    	 -	367	29374738	-	EF0085	-	conserved domain protein	
78	 32.53 -1    83263..84750    	 -	495	29374739	-	EF0086	-	conserved domain protein	
79	 41.62       85595..91558    	 +	1987	29374740	-	EF0089	-	conserved domain protein	
80	 39.13       91977..92891    	 +	304	29374741	-	EF0090	-	diacylglycerol kinase catalytic domain protein	
81	 35.13       92973..94478    	 +	501	29374742	-	EF0091	-	conserved hypothetical protein	
82	 31.67 -1    94814..95053    	 +	79	29374743	-	EF0092	-	hypothetical protein	
83	 41.10       95068..98235    	 +	1055	29374744	-	EF0093	-	cell wall surface anchor family protein	
84	 39.95       98403..99173    	 +	256	29374745	-	EF0094	-	formate/nitrite transporter family protein	
85	 39.95       99329..100114   	 +	261	29374746	-	EF0095	-	lipoprotein, putative	
86	 32.45 -1   100173..100853   	 -	226	29374747	-	EF0096	-	conserved hypothetical protein	
87	 41.28      101110..102216   	 +	368	29374748	-	EF0097	-	regulatory protein pfoR, putative	
88	 38.33      102239..102898   	 +	219	29374749	sdhB-1	EF0098	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit	
89	 43.62 +1   102913..103806   	 +	297	29374750	sdhA-1	EF0099	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit	
90	 40.25      103833..105104   	 +	423	29374751	serS-1	EF0100	-	seryl-tRNA synthetase	
91	 40.33      105141..106055   	 -	304	29374752	-	EF0101	-	hydrolase, alpha/beta hydrolase fold family	
92	 36.67      106222..106701   	 -	159	29374753	-	EF0102	-	transcriptional regulator, ArgR family	
93	 36.40      106944..107432   	 +	162	29374754	-	EF0103	-	transcriptional regulator, ArgR family	
94	 37.16      107729..108955   	 +	408	29374755	arcA	EF0104	-	arginine deiminase	
95	 37.35      108985..110004   	 +	339	29374756	argF-1	EF0105	-	ornithine carbamoyltransferase	
96	 40.51      110110..111042   	 +	310	29374757	arcC-1	EF0106	-	carbamate kinase	
97	 35.35      111067..111759   	 +	230	29374758	-	EF0107	-	transcriptional regulator, Crp/Fnr family	
98	 38.50      111807..113258   	 +	483	29374759	-	EF0108	-	C4-dicarboxylate transporter, putative	
99	 42.14 +1   113349..114029   	 -	226	29374760	-	EF0109	-	ThiJ/PfpI family protein	
100	 40.18      114026..114361   	 -	111	29374761	-	EF0110	-	transcriptional regulator, ArsR family	

 
 37.28 MEAN 
 
 4.35  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.